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List of works by Daniel Lobo

A bioinformatics expert system linking functional data to anatomical outcomes in limb regeneration

scientific article

A dynamic architecture of life

scientific article

A linear-encoding model explains the variability of the target morphology in regeneration

scientific article published on 08 January 2014

Artificial Neural Networks as Models of Robustness in Development and Regeneration: Stability of Memory During Morphological Remodeling

article

Computational discovery and in vivo validation of hnf4 as a regulatory gene in planarian regeneration.

scientific article

Continuous Dynamic Modeling of Regulated Cell Adhesion: Sorting, Intercalation, and Involution

scientific article published on 31 October 2019

Correction: Robust Off- and Online Separation of Intracellularly Recorded Up and Down Cortical States.

scientific article published on 28 July 2009

Cross-inhibition of Turing patterns explains the self-organized regulatory mechanism of planarian fission

scientific article published on 12 October 2019

Curation and Annotation of Planarian Gene Expression Patterns with Segmented Reference Morphologies

scientific article published on 17 January 2020

Design of a flexible component gathering algorithm for converting cell-based models to graph representations for use in evolutionary search.

scientific article

Discovering novel phenotypes with automatically inferred dynamic models: a partial melanocyte conversion in Xenopus.

scientific article published on 27 January 2017

Emergent Diversity in an Open-Ended Evolving Virtual Community ⬇️

scientific article published on February 22, 2012

Evolution of form and function in a model of differentiated multicellular organisms with gene regulatory networks ⬇️

scientific article published on September 15, 2010

Evolutionary development of tensegrity structures.

scientific article published on 7 July 2010

Gap Junctional Blockade Stochastically Induces Different Species-Specific Head Anatomies in Genetically Wild-Type Girardia dorotocephala Flatworms

scientific article

Inferring regulatory networks from experimental morphological phenotypes: a computational method reverse-engineers planarian regeneration

scientific article (publication date: June 2015)

Kinetic modeling of microbial growth, enzyme activity, and gene deletions: an integrated model of β-glucosidase function in Cellvibrio japonicus

scientific article published on 24 August 2020

Limbform: a functional ontology-based database of limb regeneration experiments

scientific article

MoCha: Molecular Characterization of Unknown Pathways.

scientific article published on 7 March 2016

Modeling planarian regeneration: a primer for reverse-engineering the worm.

scientific article

Physiological controls of large-scale patterning in planarian regeneration: a molecular and computational perspective on growth and form

scientific article published on 28 April 2016

Planform: an application and database of graph-encoded planarian regenerative experiments.

scientific article

Resting potential, oncogene-induced tumorigenesis, and metastasis: the bioelectric basis of cancer in vivo

scientific article

Robust off- and online separation of intracellularly recorded up and down cortical states

scientific article

Serotonergic regulation of melanocyte conversion: A bioelectrically regulated network for stochastic all-or-none hyperpigmentation.

scientific article published on 6 October 2015

Towards a bioinformatics of patterning: a computational approach to understanding regulative morphogenesis

scientific article published on 26 November 2012

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