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List of works by Jai Ram Rideout

An Introduction to Applied Bioinformatics: a free, open, and interactive text

scientific article published on 02 October 2018

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Decreased Fecal Bacterial Diversity and Altered Microbiome in Children Colonized With Clostridium difficile

scientific article published on 01 April 2019

Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins

scientific article published on 01 April 2019

Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

scientific article published on 31 July 2015

Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses

scientific article

Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone.

scientific article published on 21 January 2015

Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets

scientific article published on 13 June 2016

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.

scientific article

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Qiita: rapid, web-enabled microbiome meta-analysis

scientific article published on 01 October 2018

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

scientific article published on 20 May 2015

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

scientific article

SunPy: A Python package for Solar Physics

scientific article published on 14 February 2020

Temporal variability is a personalized feature of the human microbiome

scientific article

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

2012 scientific article

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites

scientific article published in May 2012

cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies

scientific article published on 22 December 2015

mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking

scientific article published on September 2016

q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data

scientific article published on 20 November 2018

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