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List of works by João Pglm Rodrigues

Augmenting Research, Education, and Outreach with Client-Side Web Programming.

scientific article published on 15 December 2017

Binding hotspots of BAZ2B bromodomain: Histone interaction revealed by solution NMR driven docking.

scientific article

Defining distance restraints in HADDOCK

scientific article published on 25 June 2018

HADDOCK(2P2I): a biophysical model for predicting the binding affinity of protein-protein interaction inhibitors.

scientific article

Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK.

scientific article published in January 2017

Insights on cross-species transmission of SARS-CoV-2 from structural modeling

scientific article published on 03 December 2020

Integrative computational modeling of protein interactions

scientific article published on 26 March 2014

M3: an integrative framework for structure determination of molecular machines.

scientific article published on 14 August 2017

New Insight into the Catalytic Mechanism of Bacterial MraY from Enzyme Kinetics and Docking Studies

scientific article

PDB-Tools Web: A user-friendly interface for the manipulation of PDB files

scientific article published on 27 October 2020

PRODIGY: a web server for predicting the binding affinity of protein-protein complexes

scientific article published on 8 August 2016

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

scientific article

Proteins feel more than they see: fine-tuning of binding affinity by properties of the non-interacting surface.

scientific article published on 25 April 2014

Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial α-helical membrane anchors

scientific article published on 13 August 2018

Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.

scientific article

Sequence co-evolution gives 3D contacts and structures of protein complexes

scientific article published on 25 September 2014

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.

scientific article

Structural and Functional Analysis of a β2-Adrenergic Receptor Complex with GRK5.

scientific article published in April 2017

Structural insights into binding specificity, efficacy and bias of a βAR partial agonist

scientific article

Structural models of human ACE2 variants with SARS-CoV-2 Spike protein for structure-based drug design

scientific article published on 16 September 2020

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.

scientific article

The Supramolecular Organization of a Peptide-Based Nanocarrier at High Molecular Detail.

scientific article

The solution structure of monomeric CCL5 in complex with a doubly sulfated N-terminal segment of CCR5.

scientific article published on 4 April 2018

pdb-tools: a swiss army knife for molecular structures

article

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