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List of works by Alexander J Probst

A new view of the tree of life

scientific article (publication date: 11 April 2016)

A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses

scientific article published on 8 December 2015

An archaeal symbiont-host association from the deep terrestrial subsurface

scientific article published on 02 May 2019

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

scientific article (publication date: March 2012)

An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile

scientific article

Anaerobic degradation of 1-methylnaphthalene by a member of the Thermoanaerobacteraceae contained in an iron-reducing enrichment culture

scientific article published on 24 November 2017

Assessment of UV-C-induced water disinfection by differential PCR-based quantification of bacterial DNA damage

scientific article published on 31 March 2018

Author Correction: Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 12 November 2020

Bacillus horneckiae sp. nov., isolated from a spacecraft-assembly clean room

scientific article

Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface

scientific article published on 26 November 2014

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations

scientific article published on 01 October 2018

Carbon fixation rates in groundwater similar to those in oligotrophic marine systems

scientific article published in 2022

Cleanroom Maintenance Significantly Reduces Abundance but Not Diversity of Indoor Microbiomes

scientific article

Comparison of innovative molecular approaches and standard spore assays for assessment of surface cleanliness

scientific article

Culture Independent Genomic Comparisons Reveal Environmental Adaptations for Altiarchaeales

scientific article

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface.

scientific article published on 29 January 2018

Diversity of anaerobic microbes in spacecraft assembly clean rooms

scientific article

Effects of a long‐term anoxic warming scenario on microbial community structure and functional potential of permafrost‐affected soil

scientific article published in 2021

Functional prediction of proteins from the human gut archaeome

scientific article published in 2024

Fungal and Bacterial Communities in Indoor Dust Follow Different Environmental Determinants

scientific article

Genetic diversity in terrestrial subsurface ecosystems impacted by geological degassing

scientific article published on 12 January 2022

Genome-reconstruction for eukaryotes from complex natural microbial communities.

scientific article published in March 2018

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations.

scientific article published on 26 April 2016

Grappling archaea: ultrastructural analyses of an uncultivated, cold-loving archaeon, and its biofilm

scientific article published on 5 August 2014

Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism.

scientific article published in April 2018

Human age and skin physiology shape diversity and abundance of Archaea on skin

scientific article

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network

scientific article published on 26 February 2019

Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages.

scientific article

Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria

scientific article published on 13 March 2020

Lytic archaeal viruses infect abundant primary producers in Earth's crust

scientific article published on 30 July 2021

Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems

scientific article published on 3 February 2016

Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem

scientific article published on 28 April 2015

Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics.

scientific article published on 28 July 2017

Microbial Hotspots in Lithic Microhabitats Inferred from DNA Fractionation and Metagenomics in the Atacama Desert

scientific article published in 2021

Microbial community structures of novel Icelandic hot spring systems revealed by PhyloChip G3 analysis

scientific article

Microbial succession in an inflated lunar/Mars analog habitat during a 30-day human occupation

scientific article published on 02 June 2016

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities

scientific article published on 27 October 2015

New CRISPR-Cas systems from uncultivated microbes.

scientific article

New perspectives on microbial community distortion after whole-genome amplification

scientific article published on 26 May 2015

Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments.

scientific article

Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone

scientific article

Quo vadis? Microbial profiling revealed strong effects of cleanroom maintenance and routes of contamination in indoor environments

scientific article

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy

scientific article published on 28 May 2018

Reply to Delmont and Eren: Strain variants and population structure during the Deepwater Horizon oil spill

scientific article published on 10 October 2017

Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 08 June 2020

S-layers at second glance? Altiarchaeal grappling hooks (hami) resemble archaeal S-layer proteins in structure and sequence

scientific article published on 9 June 2015

Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders

scientific article

Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon.

scientific article published on 3 July 2018

Tackling the minority: sulfate-reducing bacteria in an archaea-dominated subsurface biofilm

scientific article

Temporal disturbance of a model stream ecosystem by high microbial diversity from treated wastewater

scientific article published in 2023

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

scientific article published on 24 October 2016

Transitory microbial habitat in the hyperarid Atacama Desert.

scientific article published on 26 February 2018

Urban Dust Microbiome: Impact on Later Atopy and Wheezing

scientific article published on 27 May 2016

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