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List of works by Jianhua Ruan

A novel link prediction algorithm for reconstructing protein–protein interaction networks by topological similarity ⬇️

scientific article published on December 11, 2012

A particle swarm optimization-based algorithm for finding gapped motifs ⬇️

scientific article published on December 13, 2010

A structure-based Multiple-Instance Learning approach to predicting in vitro transcription factor-DNA interaction

scientific article published on 21 April 2015

Adipokines Deregulate Cellular Communication via Epigenetic Repression of Gap Junction Loci in Obese Endometrial Cancer

scientific article published on 02 November 2018

Alterations in the placental methylome with maternal obesity and evidence for metabolic regulation

scientific article published on 18 October 2017

Altered expression of Arabidopsis genes in response to a multifunctional geminivirus pathogenicity protein

scientific article

An Ensemble Approach for Drug Side Effect Prediction

scientific article

Characterization and identification of microRNA core promoters in four model species

scientific article published on 9 March 2007

Comprehensive methylome analysis of ovarian tumors reveals hedgehog signaling pathway regulators as prognostic DNA methylation biomarkers

scientific article published on 10 May 2013

Computational modeling of in vivo and in vitro protein-DNA interactions by multiple instance learning

scientific article published on March 2017

Genetic and genomic analyses of RNA polymerase II-pausing factor in regulation of mammalian transcription and cell growth ⬇️

scientific article published on August 24, 2011

Genomic analyses of the RNA-binding protein Hu antigen R (HuR) identify a complex network of target genes and novel characteristics of its binding sites

scientific article

Logo2PWM: a tool to convert sequence logo to position weight matrix

scientific article published on 3 October 2017

Network-Based Single-Cell RNA-Seq Data Imputation Enhances Cell Type Identification

scientific article published on 31 March 2020

Network-based Pathway Enrichment Analysis

scientific article

Pathway Enrichment Analysis with Networks

scientific article

Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana ⬇️

scientific article published on November 24, 2011

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications

scientific article published on 28 December 2018

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: genomics with bigger data and wider applications

scientific article published on 04 February 2019

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: systems biology on diverse data types

scientific article published on 21 December 2018

The regulatory repertoire of PLZF and SALL4 in undifferentiated spermatogonia

scientific article published on 11 April 2016

Utilizing networks for differential analysis of chromatin interactions

scientific article

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