List of works - Vered Chalifa-Caspi

A Biclique Approach to Reference-Anchored Gene Blocks and Its Applications to Genomic Islands

scientific article published on 13 October 2017

A bioinformatics tool for ensuring the backwards compatibility of Legionella pneumophila typing in the genomic era.

scientific article published on 7 January 2017

A combination of gene expression ranking and co-expression network analysis increases discovery rate in large-scale mutant screens for novel Arabidopsis thaliana abiotic stress genes.

scientific article

A real-time PCR for specific detection of the Legionella pneumophila serogroup 1 ST1 complex

scientific article published on 13 September 2019

A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

scientific article

African descents are more sensitive than European descents to the antitumor compounds α-hederin and kalopanaxsaponin I.

scientific article published on 24 June 2010

Aging promotes reorganization of the CD4 T cell landscape toward extreme regulatory and effector phenotypes

scientific article published on 21 August 2019

Autosomal recessive hyponatremia due to isolated salt wasting in sweat associated with a mutation in the active site of Carbonic Anhydrase 12 ⬇️

scientific article published on December 24, 2010

Binary gene expression patterning of the molt cycle: the case of chitin metabolism

scientific article (publication date: 2014)

CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes

scientific article published on 01 May 2019

Clinical and molecular epidemiology of Acinetobacter baumannii bloodstream infections in an endemic setting.

scientific article published on 24 February 2017

Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships.

scientific article

Correction: Binary Gene Expression Patterning of the Molt Cycle: The Case of Chitin Metabolism.

scientific article published on 12 June 2015

Dormancy in Embryos: Insight from Hydrated Encysted Embryos of an Aquatic Invertebrate

scientific article published on 20 July 2017

Draft Genome Sequence of Fish Pathogenic Vibrio vulnificus Biotype 2.

scientific article

Early and late response of Nematostella vectensis transcriptome to heavy metals

scientific article published on 12 September 2014

Enzymology of mammalian phospholipases D: in vitro studies.

scientific article published on May 1996

Epigen, the last ligand of ErbB receptors, reveals intricate relationships between affinity and mitogenicity

scientific article

Estimating the efficiency of fish cross-species cDNA microarray hybridization.

scientific article published on 20 May 2007

Flavin Reductase Contributes to Pneumococcal Virulence by Protecting from Oxidative Stress and Mediating Adhesion and Elicits Protection Against Pneumococcal Challenge

scientific article published on 10 January 2018

Gene expression analysis reveals functional pathways of glatiramer acetate activation.

scientific article published on 8 March 2013

Gene expression microarray profiles of cumulus cells in lean and overweight-obese polycystic ovary syndrome patients

scientific article published on 13 January 2009

GeneAnnot: interfacing GeneCards with high-throughput gene expression compendia.

scientific article

GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support

scientific article

GeneCards: integrating information about genes, proteins and diseases.

scientific article

GeneLoc: exon-based integration of human genome maps.

scientific article published on January 2003

Glycolytic enzymes associated with the cell surface of Streptococcus pneumoniae are antigenic in humans and elicit protective immune responses in the mouse

scientific article published in November 2004

Harvesting the human genome: the Israeli perspective.

scientific article published on September 2000

Hepatopancreatic multi-transcript expression patterns in the crayfish Cherax quadricarinatus during the moult cycle.

scientific article published in December 2007

Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)

scientific article

Inositol-related gene knockouts mimic lithium's effect on mitochondrial function

scientific article published on 08 August 2013

KinSNP software for homozygosity mapping of disease genes using SNP microarrays ⬇️

scientific article published on August 1, 2010

Kinetic analysis in mixed micelles of partially purified rat brain phospholipase D activity and its activation by phosphatidylinositol 4,5-bisphosphate.

scientific article published in May 1998

Magnesium sulfate treatment alters fetal cerebellar gene expression responses to hypoxia.

scientific article published on 10 November 2009

Metabolite and transcript profiling of berry skin during fruit development elucidates differential regulation between Cabernet Sauvignon and Shiraz cultivars at branching points in the polyphenol pathway

scientific article published on 26 July 2014

Molecular Mode of Action of Asteriscus graveolens as an Anticancer Agent

scientific article published on 24 July 2018

Multi-transcript expression patterns in the gastrolith disk and the hypodermis of the crayfish Cherax quadricarinatus at premolt.

scientific article published on 7 April 2010

Oxygen uptake photosensitized by disorganized chlorophyll in model systems and thylakoids of greening barley

scientific article published on 01 April 2000

Plant response to stress meets dedifferentiation.

scientific article

Pollution-affected fish hepatic transcriptome and its expression patterns on exposure to cadmium.

scientific article

Positive selection and heat‐response transcriptomes reveal adaptive features of the Brassicaceae desert model, <i>Anastatica hierochuntica</i>

scientific article published in 2022

Post-embryonic transcriptomes of the prawn Macrobrachium rosenbergii: multigenic succession through metamorphosis.

scientific article

Primary ciliary dyskinesia caused by homozygous mutation in DNAL1, encoding dynein light chain 1.

scientific article

Search for hepatopancreatic ecdysteroid-responsive genes during the crayfish molt cycle: from a single gene to multigenicity.

scientific article published in October 2007

Senescing cells share common features with dedifferentiating cells.

scientific article published on December 2009

Streptococcus pneumoniae Cell Wall-Localized Trigger Factor Elicits a Protective Immune Response and Contributes to Bacterial Adhesion to the Host

scientific article published on 12 March 2019

Synergistic effects of abiotic stresses in plants: a case study of nitrogen limitation and saturating light intensity in Arabidopsis thaliana

scientific article published on 20 July 2018

The dead, hardened floral bracts of dispersal units of wild wheat function as storage for active hydrolases and in enhancing seedling vigor.

scientific article

List of works by Vered Chalifa-Caspi

A Biclique Approach to Reference-Anchored Gene Blocks and Its Applications to Genomic Islands

A bioinformatics tool for ensuring the backwards compatibility of Legionella pneumophila typing in the genomic era.

A combination of gene expression ranking and co-expression network analysis increases discovery rate in large-scale mutant screens for novel Arabidopsis thaliana abiotic stress genes.

A real-time PCR for specific detection of the Legionella pneumophila serogroup 1 ST1 complex

A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

African descents are more sensitive than European descents to the antitumor compounds α-hederin and kalopanaxsaponin I.

Aging promotes reorganization of the CD4 T cell landscape toward extreme regulatory and effector phenotypes

Autosomal recessive hyponatremia due to isolated salt wasting in sweat associated with a mutation in the active site of Carbonic Anhydrase 12 ⬇️

Binary gene expression patterning of the molt cycle: the case of chitin metabolism

CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes

Clinical and molecular epidemiology of Acinetobacter baumannii bloodstream infections in an endemic setting.

Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships.

Correction: Binary Gene Expression Patterning of the Molt Cycle: The Case of Chitin Metabolism.

Dormancy in Embryos: Insight from Hydrated Encysted Embryos of an Aquatic Invertebrate

Draft Genome Sequence of Fish Pathogenic Vibrio vulnificus Biotype 2.

Early and late response of Nematostella vectensis transcriptome to heavy metals

Enzymology of mammalian phospholipases D: in vitro studies.

Epigen, the last ligand of ErbB receptors, reveals intricate relationships between affinity and mitogenicity

Estimating the efficiency of fish cross-species cDNA microarray hybridization.

Flavin Reductase Contributes to Pneumococcal Virulence by Protecting from Oxidative Stress and Mediating Adhesion and Elicits Protection Against Pneumococcal Challenge

Gene expression analysis reveals functional pathways of glatiramer acetate activation.

Gene expression microarray profiles of cumulus cells in lean and overweight-obese polycystic ovary syndrome patients

GeneAnnot: interfacing GeneCards with high-throughput gene expression compendia.

GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support

GeneCards: integrating information about genes, proteins and diseases.

GeneLoc: exon-based integration of human genome maps.

Glycolytic enzymes associated with the cell surface of Streptococcus pneumoniae are antigenic in humans and elicit protective immune responses in the mouse

Harvesting the human genome: the Israeli perspective.

Hepatopancreatic multi-transcript expression patterns in the crayfish Cherax quadricarinatus during the moult cycle.

Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)

Inositol-related gene knockouts mimic lithium's effect on mitochondrial function

KinSNP software for homozygosity mapping of disease genes using SNP microarrays ⬇️

Kinetic analysis in mixed micelles of partially purified rat brain phospholipase D activity and its activation by phosphatidylinositol 4,5-bisphosphate.

Magnesium sulfate treatment alters fetal cerebellar gene expression responses to hypoxia.

Metabolite and transcript profiling of berry skin during fruit development elucidates differential regulation between Cabernet Sauvignon and Shiraz cultivars at branching points in the polyphenol pathway

Molecular Mode of Action of Asteriscus graveolens as an Anticancer Agent

Multi-transcript expression patterns in the gastrolith disk and the hypodermis of the crayfish Cherax quadricarinatus at premolt.

Oxygen uptake photosensitized by disorganized chlorophyll in model systems and thylakoids of greening barley

Plant response to stress meets dedifferentiation.

Pollution-affected fish hepatic transcriptome and its expression patterns on exposure to cadmium.

Positive selection and heat‐response transcriptomes reveal adaptive features of the Brassicaceae desert model, <i>Anastatica hierochuntica</i>

Post-embryonic transcriptomes of the prawn Macrobrachium rosenbergii: multigenic succession through metamorphosis.

Primary ciliary dyskinesia caused by homozygous mutation in DNAL1, encoding dynein light chain 1.

Search for hepatopancreatic ecdysteroid-responsive genes during the crayfish molt cycle: from a single gene to multigenicity.

Senescing cells share common features with dedifferentiating cells.

Streptococcus pneumoniae Cell Wall-Localized Trigger Factor Elicits a Protective Immune Response and Contributes to Bacterial Adhesion to the Host

Synergistic effects of abiotic stresses in plants: a case study of nitrogen limitation and saturating light intensity in Arabidopsis thaliana

The dead, hardened floral bracts of dispersal units of wild wheat function as storage for active hydrolases and in enhancing seedling vigor.