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List of works by Ikuko Hara-Nishimura

<i>In vitro</i> assembly of nuclear envelope in tobacco cultured cells

scientific article published on 01 December 2021

A direction-selective local-thresholding method, DSLT, in combination with a dye-based method for automated three-dimensional segmentation of cells and airspaces in developing leaves

scientific article published in January 2015

A non-destructive screenable marker, OsFAST, for identifying transgenic rice seeds ⬇️

scientific article published on October 1, 2011

A novel ER-derived compartment, the ER body, selectively accumulates a beta-glucosidase with an ER-retention signal in Arabidopsis

scientific article

A novel membrane fusion-mediated plant immunity against bacterial pathogens.

scientific article published on 15 October 2009

A novel role for oleosins in freezing tolerance of oilseeds in Arabidopsis thaliana

scientific article published on 14 May 2008

A plant vacuolar protease, VPE, mediates virus-induced hypersensitive cell death.

scientific article

A rapid and non-destructive screenable marker, FAST, for identifying transformed seeds of Arabidopsis thaliana

scientific article published on 25 November 2009

A simple and reliable multi-gene transformation method for switchgrass

scientific article published on 04 April 2014

A space-saving visual screening method, Glycine max FAST, for generating transgenic soybean

scientific article published on 05 February 2020

A vacuolar processing enzyme, deltaVPE, is involved in seed coat formation at the early stage of seed development

scientific article published on 10 February 2005

A vacuolar sorting receptor PV72 on the membrane of vesicles that accumulate precursors of seed storage proteins (PAC vesicles).

scientific article

A wound-inducible organelle derived from endoplasmic reticulum: a plant strategy against environmental stresses? ⬇️

scientific article published on December 1, 2003

ANGUSTIFOLIA Regulates Actin Filament Alignment for Nuclear Positioning in Leaves

scientific article published on 07 November 2018

Activation of Arabidopsis vacuolar processing enzyme by self-catalytic removal of an auto-inhibitory domain of the C-terminal propeptide

scientific article published in February 2002

Activation of an ER-body-localized beta-glucosidase via a cytosolic binding partner in damaged tissues of Arabidopsis thaliana

scientific article published on 26 May 2005

An ABC transporter B family protein, ABCB19, is required for cytoplasmic streaming and gravitropism of the inflorescence stems.

scientific article published on 4 September 2015

An ER-localized form of PV72, a seed-specific vacuolar sorting receptor, interferes the transport of an NPIR-containing proteinase in Arabidopsis leaves.

scientific article published in January 2004

An asparaginyl endopeptidase mediates in vivo protein backbone cyclization.

scientific article published on 13 August 2007

An endoplasmic reticulum-derived structure that is induced under stress conditions in Arabidopsis

scientific article published in December 2002

An isoform of myosin XI is responsible for the translocation of endoplasmic reticulum in tobacco cultured BY-2 cells

scientific article

Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thaliana

scientific article published on 8 May 2008

Arabidopsis ECHIDNA protein is involved in seed coloration, protein trafficking to vacuoles, and vacuolar biogenesis

scientific article published on 23 March 2020

Arabidopsis FLYING SAUCER 2 Functions Redundantly with FLY1 to Establish Normal Seed Coat Mucilage

scientific article published on 01 February 2020

Arabidopsis KAM2/GRV2 is required for proper endosome formation and functions in vacuolar sorting and determination of the embryo growth axis.

scientific article published on 26 January 2007

Arabidopsis Qa-SNARE SYP2 proteins localized to different subcellular regions function redundantly in vacuolar protein sorting and plant development ⬇️

scientific article published on November 24, 2010

Arabidopsis VPS35, a retromer component, is required for vacuolar protein sorting and involved in plant growth and leaf senescence

scientific article published on 25 January 2008

Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses

scientific article published in December 2013

Arabidopsis vacuolar sorting mutants (green fluorescent seed) can be identified efficiently by secretion of vacuole-targeted green fluorescent protein in their seeds.

scientific article published on 9 February 2007

Asparagine endopeptidase is not essential for class II MHC antigen presentation but is required for processing of cathepsin L in mice.

scientific article published in June 2005

AtMap1: a DNA microarray for genomic deletion mapping in Arabidopsis thaliana.

scientific article

AtVAM3 is required for normal specification of idioblasts, myrosin cells

scientific article published on 23 November 2005

AtVPS29, a putative component of a retromer complex, is required for the efficient sorting of seed storage proteins

scientific article published on 22 August 2006

BEACH-domain proteins act together in a cascade to mediate vacuolar protein trafficking and disease resistance in Arabidopsis.

scientific article published on 15 December 2014

Behavior of vacuoles during microspore and pollen development in Arabidopsis thaliana

scientific article published on 01 November 2003

Bimodal expression level polymorphisms inArabidopsis thaliana ⬇️

scientific article published on July 1, 2012

Biogenesis of leaf endoplasmic reticulum body is regulated by both jasmonate-dependent and independent pathways

scientific article published on 27 May 2019

Biosynthetic processing of cathepsins and lysosomal degradation are abolished in asparaginyl endopeptidase-deficient mice

scientific journal article

Blue light-induced association of phototropin 2 with the Golgi apparatus.

scientific article published in March 2006

C-terminal KDEL sequence of a KDEL-tailed cysteine proteinase (sulfhydryl-endopeptidase) is involved in formation of KDEL vesicle and in efficient vacuolar transport of sulfhydryl-endopeptidase

scientific article published in August 2003

CONTINUOUS VASCULAR RING (COV1) is a trans-Golgi network-localized membrane protein required for Golgi morphology and vacuolar protein sorting

scientific article published on 19 December 2013

CRISPR/Cas9-mediated targeted mutagenesis in the liverwort Marchantia polymorpha L.

scientific article published on 18 January 2014

Calcium-mediated association of a putative vacuolar sorting receptor PV72 with a propeptide of 2S albumin

scientific article published on 17 December 2001

Characterization of rhizome transcriptome and identification of a rhizomatous ER body in the clonal plant Cardamine leucantha

scientific article published on 06 August 2020

Comprehensive nuclear proteome of Arabidopsis obtained by sequential extraction

scientific article published on 01 December 2019

Constitutive and inducible ER bodies of Arabidopsis thaliana accumulate distinct beta-glucosidases

scientific article published on 15 January 2009

Decreased Expression of a Gene Caused by a T-DNA Insertion in an Adjacent Gene in Arabidopsis

scientific article published in February 2016

Degradation of sphingoid long-chain base 1-phosphates (LCB-1Ps): functional characterization and expression of AtDPL1 encoding LCB-1P lyase involved in the dehydration stress response in Arabidopsis.

scientific article

Diversity and formation of endoplasmic reticulum-derived compartments in plants. Are these compartments specific to plant cells?

scientific article

Dynamic Capture and Release of Endoplasmic Reticulum Exit Sites by Golgi Stacks in Arabidopsis

scientific article published on 12 June 2020

Dynamic aspects of ion accumulation by vesicle traffic under salt stress in Arabidopsis.

scientific article published in December 2009

Dynamics of the Light-Dependent Transition of Plant Peroxisomes.

scientific article published on 10 June 2015

ER bodies in plants of the Brassicales order: biogenesis and association with innate immunity

scientific article published on 10 March 2014

ERMO3/MVP1/GOLD36 is involved in a cell type-specific mechanism for maintaining ER morphology in Arabidopsis thaliana

scientific article

Ectopic expression of an esterase, which is a candidate for the unidentified plant cutinase, causes cuticular defects in Arabidopsis thaliana

scientific article

Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha

scientific article published in PLoS ONE

Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis inMarchantia polymorpha

Endoplasmic Reticulum (ER) Membrane Proteins (LUNAPARKs) are Required for Proper Configuration of the Cortical ER Network in Plant Cells

article

Endoplasmic Reticulum (ER) Membrane Proteins (LUNAPARKs) are Required for Proper Configuration of the Cortical ER Network in Plant Cells

scientific article published on 01 October 2018

Endoplasmic reticulum-derived bodies enable a single-cell chemical defense in Brassicaceae plants

scientific article published on 14 January 2020

Endoplasmic reticulum-resident proteins are constitutively transported to vacuoles for degradation.

scientific article published in August 2004

Endosomal proteases facilitate the fusion of endosomes with vacuoles at the final step of the endocytotic pathway

scientific article published in March 2005

Enhancement of leaf photosynthetic capacity through increased stomatal density in Arabidopsis ⬇️

scientific article published on February 25, 2013

Evaluation of defective endosomal trafficking to the vacuole by monitoring seed storage proteins in Arabidopsis thaliana

scientific article published on 01 January 2014

Excess sterols disrupt plant cellular activity by inducing stress-responsive gene expression

scientific article published on 17 March 2020

FAMA is an essential component for the differentiation of two distinct cell types, myrosin cells and guard cells, in Arabidopsis

scientific article published on 10 October 2014

FAMA: A Molecular Link between Stomata and Myrosin Cells

scientific article

Functional insights of nucleocytoplasmic transport in plants.

scientific article published on 02 April 2014

Functions of plant-specific myosin XI: from intracellular motility to plant postures.

scientific article published on 29 September 2015

GFS9/TT9 contributes to intracellular membrane trafficking and flavonoid accumulation in Arabidopsis thaliana.

scientific article

GNOM-LIKE1/ERMO1 and SEC24a/ERMO2 are required for maintenance of endoplasmic reticulum morphology in Arabidopsis thaliana

scientific article published on 20 November 2009

GREEN FLUORESCENT SEED, to Evaluate Vacuolar Trafficking in Arabidopsis Seeds

scientific article published on 01 January 2018

Gene expression profiles in rice gametes and zygotes: identification of gamete-enriched genes and up- or down-regulated genes in zygotes after fertilization.

scientific article published on 9 April 2013

Generation of Arabidopsis lines with a red fluorescent marker for endoplasmic reticulum using a tail-anchored protein cytochrome b5 -B

scientific article published on 07 July 2020

HIGH STEROL ESTER 1 is a key factor in plant sterol homeostasis

scientific article published on 11 November 2019

HSP90 Stabilizes Auxin-Responsive Phenotypes by Masking a Mutation in the Auxin Receptor TIR1.

scientific article

HSP90 stabilizes auxin receptor TIR1 and ensures plasticity of auxin responses

scientific article

Higher Stomatal Density Improves Photosynthetic Induction and Biomass Production in Arabidopsis Under Fluctuating Light

scientific article published on 21 October 2020

How to Investigate the Role of the Actin-Myosin Cytoskeleton in Organ Straightening

scientific article published on 01 January 2019

Identification and characterization of nuclear pore complex components in Arabidopsis thaliana.

scientific article published on 28 December 2010

Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development.

scientific article

Identification of Periplasmic Root-Cap Mucilage in Developing Columella Cells of Arabidopsis thaliana

scientific article published on 01 June 2019

Identification of an allele of VAM3/SYP22 that confers a semi-dwarf phenotype in Arabidopsis thaliana.

scientific article published on 4 June 2005

Identification of two novel endoplasmic reticulum body-specific integral membrane proteins.

scientific article published on 19 November 2012

Involvement of Adapter Protein Complex 4 in Hypersensitive Cell Death Induced by Avirulent Bacteria.

scientific article

Involvement of the nuclear pore complex in morphology of the plant nucleus

scientific article published on May 2011

Isolation of Protein Storage Vacuoles and Their Membranes

scientific article published in January 2017

Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana

scientific article

KAKU4 determines the migration order of the vegetative nucleus and sperm cells in pollen tubes

scientific article published on 10 August 2020

KATAMARI1/MURUS3 Is a novel golgi membrane protein that is required for endomembrane organization in Arabidopsis

scientific article published on 29 April 2005

Leaf Endoplasmic Reticulum Bodies Identified in Arabidopsis Rosette Leaves Are Involved in Defense against Herbivory

scientific article published on 29 January 2019

Leaf oil bodies are subcellular factories producing antifungal oxylipins.

scientific article published on 03 June 2015

Leaf oil body functions as a subcellular factory for the production of a phytoalexin in Arabidopsis

scientific article

Legumain/asparaginyl endopeptidase controls extracellular matrix remodeling through the degradation of fibronectin in mouse renal proximal tubular cells

scientific journal article

Localization of myo-inositol-1-phosphate synthase to the endosperm in developing seeds of Arabidopsis

scientific article published on 4 July 2008

MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana

scientific article

MAG4/Atp115 is a golgi-localized tethering factor that mediates efficient anterograde transport in Arabidopsis.

scientific article published on 12 September 2010

MAIGO2 is involved in exit of seed storage proteins from the endoplasmic reticulum in Arabidopsis thaliana

scientific article published on 28 December 2006

MAIGO5 functions in protein export from Golgi-associated endoplasmic reticulum exit sites in Arabidopsis.

scientific article published on 26 November 2013

Measurement of the Caspase-1-Like Activity of Vacuolar Processing Enzyme in Plants

scientific article published in January 2018

Membrane Dynamics and Multiple Functions of Oil Bodies in Seeds and Leaves.

scientific article published on 4 December 2017

Mice lacking asparaginyl endopeptidase develop disorders resembling hemophagocytic syndrome

scholarly article

Microtubules contribute to tubule elongation and anchoring of endoplasmic reticulum, resulting in high network complexity in Arabidopsis

scientific article published on 3 November 2014

Molecular characterization of an Arabidopsis acyl-coenzyme a synthetase localized on glyoxysomal membranes

scientific article published in December 2002

Myosin XI-Dependent Formation of Tubular Structures from Endoplasmic Reticulum Isolated from Tobacco Cultured BY-2 Cells ⬇️

scientific article published on March 22, 2011

Myosin XI-i links the nuclear membrane to the cytoskeleton to control nuclear movement and shape in Arabidopsis.

scientific article

Myosin-dependent endoplasmic reticulum motility and F-actin organization in plant cells.

scientific article

Myrosin cell development is regulated by endocytosis machinery and PIN1 polarity in leaf primordia of Arabidopsis thaliana

scientific article published on 26 November 2014

Myrosin cells are differentiated directly from ground meristem cells and are developmentally independent of the vasculature in Arabidopsis leaves

scientific article

NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis

scientific article

NAI1 gene encodes a basic-helix-loop-helix-type putative transcription factor that regulates the formation of an endoplasmic reticulum-derived structure, the ER body

scientific article

NAI2 and TSA1 Drive Differentiation of Constitutive and Inducible ER Body Formation in Brassicaceae

scientific article published on 01 April 2020

NAI2 and TSA1 Drive Differentiation of Constitutive and Inducible ER Body Formation in Brassicaceae

scientific article published on 26 December 2019

NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana.

scientific article

Novel Glyoxysomal Protein Kinase, GPK1, Identified by Proteomic Analysis of Glyoxysomes in Etiolated Cotyledons of Arabidopsis thaliana ⬇️

scientific article published on 01 October 2003

Nucleoporin 75 is involved in the ethylene-mediated production of phytoalexin for the resistance of Nicotiana benthamiana to Phytophthora infestans.

scientific article published in December 2014

Nup82 functions redundantly with Nup136 in a salicylic acid-dependent defense response of Arabidopsis thaliana

scientific article published on 10 January 2017

Oil body-mediated defense against fungi: From tissues to ecology.

scientific article published on January 2015

Oil-body-membrane proteins and their physiological functions in plants

scientific article published on 01 January 2010

PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana.

scientific article

Pectin RG-I rhamnosyltransferases represent a novel plant-specific glycosyltransferase family

scientific article published on 06 August 2018

Phosphorylation of the C Terminus of RHD3 Has a Critical Role in Homotypic ER Membrane Fusion in Arabidopsis

scientific article (publication date: February 2016)

Plant Nuclei Move to Escape Ultraviolet-Induced DNA Damage and Cell Death.

scientific article published on 17 December 2015

Plant Vacuoles.

scientific article

Plant-specific insertions in the soybean aspartic proteinases, soyAP1 and soyAP2, perform different functions of vacuolar targeting

scientific article published on 25 October 2005

Polar Localization of the Borate Exporter BOR1 Requires AP2-Dependent Endocytosis

scientific article published on 01 February 2019

Polar Localization of the NIP5;1 Boric Acid Channel Is Maintained by Endocytosis and Facilitates Boron Transport in Arabidopsis Roots.

scientific article published on 24 March 2017

Positive and negative peptide signals control stomatal density

scientific article published on 21 April 2011

Quantitative analysis of ER body morphology in an Arabidopsis mutant

scientific article published in December 2009

Recent advances in understanding plant nuclear envelope proteins involved in nuclear morphology

scientific article

Regulation of organ straightening and plant posture by an actin-myosin XI cytoskeleton

scientific article published on 23 March 2015

Retromer contributes to immunity-associated cell death in Arabidopsis.

scientific article published on 13 February 2015

Spatiotemporal secretion of PEROXIDASE36 is required for seed coat mucilage extrusion in Arabidopsis.

scientific article published on 9 April 2013

Specialized Vacuoles of Myrosin Cells: Chemical Defense Strategy in Brassicales Plants

scientific article published on 01 July 2018

Stomagen positively regulates stomatal density in Arabidopsis

scientific article published in Nature

Stress granule formation is induced by a threshold temperature rather than a temperature difference in Arabidopsis

scientific article published on 20 August 2018

Subnuclear gene positioning through lamina association affects copper tolerance

scientific article published on 20 November 2020

Sucrose Starvation Induces Microautophagy in Plant Root Cells

scientific article published on 03 December 2019

Synaptotagmin-Associated Endoplasmic Reticulum-Plasma Membrane Contact Sites Are Localized to Immobile ER Tubules

scientific article published on 20 August 2018

The AP-1 Complex is Required for Proper Mucilage Formation in Arabidopsis Seeds

scientific article published on 01 November 2018

The AP-1 μ adaptin is required for KNOLLE localization at the cell plate to mediate cytokinesis in Arabidopsis.

scientific article published on 29 March 2013

The Adaptor Complex AP-4 Regulates Vacuolar Protein Sorting at the trans-Golgi Network by Interacting with VACUOLAR SORTING RECEPTOR1.

scientific article published on 6 November 2015

The Arabidopsis transcription factor NAI1 activates the <i>NAI2</i> promoter by binding to the G-box motifs

scientific article published on 14 December 2020

The ER body, a new organelle in Arabidopsis thaliana, requires NAI2 for its formation and accumulates specific beta-glucosidases.

scientific article

The ER body, a novel endoplasmic reticulum-derived structure in Arabidopsis.

scientific article

The Multifaceted Roles of Plant Vacuoles

scientific article published on 01 July 2018

The Novel Nuclear Envelope Protein KAKU4 Modulates Nuclear Morphology in Arabidopsis

scientific article published on 13 May 2014

The chemical compound bubblin induces stomatal mispatterning in Arabidopsis by disrupting the intrinsic polarity of stomatal lineage cells

scientific article published on 13 January 2017

The mitochondrial Ras-related GTPase Miro: views from inside and outside the metazoan kingdom

scientific article

The molecular architecture of the plant nuclear pore complex.

scientific article published on 17 September 2012

The slow wound-response of gammaVPE is regulated by endogenous salicylic acid in Arabidopsis.

scientific article published on 5 November 2003

The μ Subunit of Arabidopsis Adaptor Protein-2 Is Involved in Effector-Triggered Immunity Mediated by Membrane-Localized Resistance Proteins.

scientific article published in February 2016

Tissue-specific and intracellular localization of indican synthase from Polygonum tinctorium

scientific article published on 28 August 2018

Two vacuole-mediated defense strategies in plants.

scientific article published on December 2010

Unique defense strategy by the endoplasmic reticulum body in plants.

scientific article

Vacuolar SNAREs function in the formation of the leaf vascular network by regulating auxin distribution

scientific article

Vacuolar processing enzyme in plant programmed cell death

scientific article

Vacuolar processing enzyme is essential for mycotoxin-induced cell death in Arabidopsis thaliana.

scientific article published on 25 July 2005

Vacuolar processing enzyme: an executor of plant cell death

scientific article

Vacuolar processing enzymes are essential for proper processing of seed storage proteins in Arabidopsis thaliana

scientific article

Vacuolar processing enzymes in the plant life cycle

scientific article published on 07 December 2019

Vacuolar sorting receptor for seed storage proteins in Arabidopsis thaliana

scientific article

Vacuolar transport in higher plants

scientific article published on 01 December 2008

Why green fluorescent fusion proteins have not been observed in the vacuoles of higher plants.

scientific article

[Nucleocytoplasmic transport systems in higher plants]

scientific article published in February 2015

[Organelle-mediated cell death system in higher plants]

scientific article published on 01 May 2007

[Vacuolar processing enzyme exhibiting caspase 1-like activity is involved in plant programmed cell death].

scientific article published in April 2005

tRNA Wobble Modification Affects Leaf Cell Development in Arabidopsis thaliana

scientific article published on 01 September 2019

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