List of works - L Li

A random-periods model for expression of cell-cycle genes.

scientific article

ART: a next-generation sequencing read simulator.

scientific article

An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChIP-Seq.

scientific article

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data

scientific article published on 02 December 2019

Cloning of CYP2J2 gene and identification of functional polymorphisms

scientific article

Conformational changes in conantokin-G induced upon binding of calcium and magnesium as revealed by NMR structural analysis.

scientific article published in June 1998

DNA methylation prevents CTCF-mediated silencing of the oncogene BCL6 in B cell lymphomas.

scientific article

Deficiency of the placenta- and yolk sac-specific tristetraprolin family member ZFP36L3 identifies likely mRNA targets and an unexpected link to placental iron metabolism

scientific article

Deuterium and its role in the machinery of evolution

scientific article published on 15 August 2005

Diethylstilbestrol (DES)-stimulated hormonal toxicity is mediated by ERα alteration of target gene methylation patterns and epigenetic modifiers (DNMT3A, MBD2, and HDAC2) in the mouse seminal vesicle

scientific article published on 06 December 2013

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip.

scientific article published on 17 September 2015

Efficiently identifying genome-wide changes with next-generation sequencing data ⬇️

scientific article published on July 29, 2011

Estrogen-mediated regulation of Igf1 transcription and uterine growth involves direct binding of estrogen receptor alpha to estrogen-responsive elements

scientific article

Gene assessment and sample classification for gene expression data using a genetic algorithm/k-nearest neighbor method.

scientific article

Gene expression profiling of rat livers reveals indicators of potential adverse effects.

scientific article published on 14 April 2004

Gene set enrichment analysis for non-monotone association and multiple experimental categories

scientific article

HNF4α regulates sulfur amino acid metabolism and confers sensitivity to methionine restriction in liver cancer

scientific article published on 07 August 2020

IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data.

scientific article

Id Proteins Suppress E2A-Driven Invariant Natural Killer T Cell Development prior to TCR Selection.

scientific article published on 24 January 2018

Identification and analysis of murine pancreatic islet enhancers

scientific article published on 14 December 2012

Identification and functional characterization of polymorphisms in human cyclooxygenase-1 (PTGS1).

scientific article

Identification of residues 286 and 289 as critical for conferring substrate specificity of human CYP2C9 for diclofenac and ibuprofen

scientific article published on 01 September 1998

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

scientific article

Loss of Glis3 causes dysregulation of retrotransposon silencing and germ cell demise in fetal mouse testis.

scientific article

Mediator complex component MED13 regulates zygotic genome activation and is required for postimplantation development in the mouse.

scientific article published on 9 January 2018

New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations

scientific article (publication date: March 1999)

Non-targeted urinary metabolomics in pregnancy and associations with fetal growth restriction

scientific article published on 24 March 2020

Novel DNA motif binding activity observed in vivo with an estrogen receptor α mutant mouse

scientific article

Novel consensus DNA‐binding sequence for BRCA1 protein complexes ⬇️

scientific article (publication date: October 2003)

Oct4/Sox2-regulated miR-302 targets cyclin D1 in human embryonic stem cells

scientific article

PAVIS: a tool for Peak Annotation and Visualization.

scientific article published on 04 September 2013

Post-transcriptional regulation of transcript abundance by a conserved member of the tristetraprolin family in Candida albicans

scientific article

Posttranscriptional Regulation of Cell-Cell Interaction Protein-Encoding Transcripts by Zfs1p in Schizosaccharomyces pombe ⬇️

scientific article published on August 20, 2012

Prediction of solution structures of the Ca2+-bound gamma-carboxyglutamic acid domains of protein S and homolog growth arrest specific protein 6: use of the particle mesh Ewald method ⬇️

scientific article published on October 1, 1997

Research resource: whole-genome estrogen receptor α binding in mouse uterine tissue revealed by ChIP-seq

scientific article

Role of γ-Carboxyglutamic Acid in the Calcium-Induced Structural Transition of Conantokin G, a Conotoxin from the Marine Snail Conus geographus, ⬇️

scientific article published on December 16, 1997

Sleep Apnea and Hypoventilation in Patients with Down Syndrome: Analysis of 144 Polysomnogram Studies

scientific article published on 30 June 2017

The (1)H NMR structure of bovine Pb(2+)-osteocalcin and implications for lead toxicity

scientific article published on 27 August 2008

The Drosophila Tis11 protein and its effects on mRNA expression in flies

scientific article

The Roles of Individual γ-Carboxyglutamate Residues in the Solution Structure and Cation-dependent Properties of Conantokin-T ⬇️

scientific article published on March 27, 1998

The novel p53 target TNFAIP8 variant 2 is increased in cancer and offsets p53-dependent tumor suppression

scientific article published on 11 November 2016

Transcriptional repression by the BRG1-SWI/SNF complex affects the pluripotency of human embryonic stem cells.

scientific article

Vertical-scanning mutagenesis of a critical tryptophan in the minor groove binding track of HIV-1 reverse transcriptase. Molecular nature of polymerase-nucleic acid interactions

scientific article published on 01 November 1998

fdrMotif: identifying cis-elements by an EM algorithm coupled with false discovery rate control

scientific article published on 22 February 2008

List of works by L Li

A random-periods model for expression of cell-cycle genes.

ART: a next-generation sequencing read simulator.

An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChIP-Seq.

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data

Cloning of CYP2J2 gene and identification of functional polymorphisms

Conformational changes in conantokin-G induced upon binding of calcium and magnesium as revealed by NMR structural analysis.

DNA methylation prevents CTCF-mediated silencing of the oncogene BCL6 in B cell lymphomas.

Deficiency of the placenta- and yolk sac-specific tristetraprolin family member ZFP36L3 identifies likely mRNA targets and an unexpected link to placental iron metabolism

Deuterium and its role in the machinery of evolution

Diethylstilbestrol (DES)-stimulated hormonal toxicity is mediated by ERα alteration of target gene methylation patterns and epigenetic modifiers (DNMT3A, MBD2, and HDAC2) in the mouse seminal vesicle

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip.

Efficiently identifying genome-wide changes with next-generation sequencing data ⬇️

Estrogen-mediated regulation of Igf1 transcription and uterine growth involves direct binding of estrogen receptor alpha to estrogen-responsive elements

Gene assessment and sample classification for gene expression data using a genetic algorithm/k-nearest neighbor method.

Gene expression profiling of rat livers reveals indicators of potential adverse effects.

Gene set enrichment analysis for non-monotone association and multiple experimental categories

HNF4α regulates sulfur amino acid metabolism and confers sensitivity to methionine restriction in liver cancer

IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data.

Id Proteins Suppress E2A-Driven Invariant Natural Killer T Cell Development prior to TCR Selection.

Identification and analysis of murine pancreatic islet enhancers

Identification and functional characterization of polymorphisms in human cyclooxygenase-1 (PTGS1).

Identification of residues 286 and 289 as critical for conferring substrate specificity of human CYP2C9 for diclofenac and ibuprofen

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

Loss of Glis3 causes dysregulation of retrotransposon silencing and germ cell demise in fetal mouse testis.

Mediator complex component MED13 regulates zygotic genome activation and is required for postimplantation development in the mouse.

New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations

Non-targeted urinary metabolomics in pregnancy and associations with fetal growth restriction

Novel DNA motif binding activity observed in vivo with an estrogen receptor α mutant mouse

Novel consensus DNA‐binding sequence for BRCA1 protein complexes ⬇️

Oct4/Sox2-regulated miR-302 targets cyclin D1 in human embryonic stem cells

PAVIS: a tool for Peak Annotation and Visualization.

Post-transcriptional regulation of transcript abundance by a conserved member of the tristetraprolin family in Candida albicans

Posttranscriptional Regulation of Cell-Cell Interaction Protein-Encoding Transcripts by Zfs1p in Schizosaccharomyces pombe ⬇️

Prediction of solution structures of the Ca2+-bound gamma-carboxyglutamic acid domains of protein S and homolog growth arrest specific protein 6: use of the particle mesh Ewald method ⬇️

Research resource: whole-genome estrogen receptor α binding in mouse uterine tissue revealed by ChIP-seq

Role of γ-Carboxyglutamic Acid in the Calcium-Induced Structural Transition of Conantokin G, a Conotoxin from the Marine Snail Conus geographus, ⬇️

Sleep Apnea and Hypoventilation in Patients with Down Syndrome: Analysis of 144 Polysomnogram Studies

The (1)H NMR structure of bovine Pb(2+)-osteocalcin and implications for lead toxicity

The Drosophila Tis11 protein and its effects on mRNA expression in flies

The Roles of Individual γ-Carboxyglutamate Residues in the Solution Structure and Cation-dependent Properties of Conantokin-T ⬇️

The novel p53 target TNFAIP8 variant 2 is increased in cancer and offsets p53-dependent tumor suppression

Transcriptional repression by the BRG1-SWI/SNF complex affects the pluripotency of human embryonic stem cells.

Vertical-scanning mutagenesis of a critical tryptophan in the minor groove binding track of HIV-1 reverse transcriptase. Molecular nature of polymerase-nucleic acid interactions

fdrMotif: identifying cis-elements by an EM algorithm coupled with false discovery rate control