List of works - Tomas Alarcon

3D hybrid modelling of vascular network formation.

scientific article published on 24 November 2016

A cellular automaton model for tumour growth in inhomogeneous environment

scientific article published on 01 November 2003

A design principle for vascular beds: the effects of complex blood rheology

scientific article published on 01 May 2005

A mathematical model of Doxorubicin treatment efficacy for non-Hodgkin's lymphoma: investigation of the current protocol through theoretical modelling results.

scientific article published in January 2005

A mathematical model of the effects of hypoxia on the cell-cycle of normal and cancer cells.

scientific article

A multiscale model of complex endothelial cell dynamics in early angiogenesis

scientific article published on 07 January 2021

Accelerated geroncogenesis in hereditary breast-ovarian cancer syndrome

scientific article published on 02 March 2016

Age Structure Can Account for Delayed Logistic Proliferation of Scratch Assays

scientific article published on 14 June 2019

Age-structure as key to delayed logistic proliferation of scratch assays

Angiogenesis and vascular remodelling in normal and cancerous tissues.

scientific article published on 22 October 2008

Breast cancer dormancy can be maintained by small numbers of micrometastases.

scientific article

Capillary Filling at the Microscale: Control of Fluid Front Using Geometry

scientific article

Coarse-graining and hybrid methods for efficient simulation of stochastic multi-scale models of tumour growth

scientific article published in December 2017

Comment on "Morphogenetic action through flux-limited spreading" by Verbeni, Sánchez, Mollica, Siegl-Cachedenier, Carleton, Guerrero, Ruiz i Altaba, and Soler

scientific article published on 16 October 2013

Computational modeling of angiogenesis: The importance of cell rearrangements during vascular growth

scientific article published on 12 December 2023

Energy transduction in periodically driven non-hermitian systems

scientific article published on 01 November 2000

Epigenetic regulation of cell fate reprogramming in aging and disease: A predictive computational model.

scientific article

Evolutionary escape on complex genotype-phenotype networks.

scientific article published on 20 January 2016

From invasion to latency: intracellular noise and cell motility as key controls of the competition between resource-limited cellular populations.

scientific article published on 2 April 2015

Front microrheology of the non-Newtonian behaviour of blood: scaling theory of erythrocyte aggregation by aging.

scientific article published on 4 April 2017

Germline BRCA1 mutation reprograms breast epithelial cell metabolism towards mitochondrial-dependent biosynthesis: evidence for metformin-based "starvation" strategies in BRCA1 carriers.

scientific article published on 31 May 2016

Gerometabolites: the pseudohypoxic aging side of cancer oncometabolites.

scientific article

Hybrid approaches for multiple-species stochastic reaction-diffusion models ⬇️

scientific article

In vitro cell migration quantification method for scratch assays

scientific article published on 01 February 2019

Invasion in multi-type populations: the role of phenotypic robustness and fluctuations ⬇️

scientific article published on December 24, 2010

Mathematical models of the VEGF receptor and its role in cancer therapy.

scientific article

Mathematical models of the fate of lymphoma B cells after antigen receptor ligation with specific antibodies.

scientific article

Mesoscopic and continuum modelling of angiogenesis ⬇️

scientific article published on 11 March 2014

Metabostemness: Metaboloepigenetic reprogramming of cancer stem-cell functions

scientific article published on 26 December 2014

Metabostemness: a new cancer hallmark.

scientific article

Minimum Action Path Theory Reveals the Details of Stochastic Transitions Out of Oscillatory States

scientific article published in Physical Review Letters

Modelling aspects of cancer dynamics: a review

scientific article published on June 2006

Modelling cell growth and its modulation of the G1/S transition.

scientific article published on 4 November 2006

Multiscale modelling of vascular tumour growth in 3D: the roles of domain size and boundary conditions

scientific article (publication date: 2011)

Noise-induced bistability in the fate of cancer phenotypic quasispecies: a bit-strings approach

scientific article published on 18 January 2018

Oncometabolic Nuclear Reprogramming of Cancer Stemness

scientific article published on 27 January 2016

Phase-field modelling of the dynamics of Z-ring formation in liposomes: Onset of constriction and coarsening

scientific article published on 25 June 2015

Quiescence: a mechanism for escaping the effects of drug on cell populations.

scientific article published on 11 June 2010

Robustness of differentiation cascades with symmetric stem cell division

scientific article published on 9 April 2014

Senescence-Inflammatory Regulation of Reparative Cellular Reprogramming in Aging and Cancer.

scientific article published on 5 May 2017

Stability analysis of multi-compartment models for cell production systems.

scientific article published on 24 June 2011

Stochastic modelling of the eradication of the HIV-1 infection by stimulation of latently infected cells in patients under highly active anti-retroviral therapy.

scientific article

Stochastic modelling of viral blips in HIV-1-infected patients: effects of inhomogeneous density fluctuations

scientific article published on 11 February 2015

Stochastic models of receptor oligomerization by bivalent ligand.

scientific article

Stochastic multi-scale models of competition within heterogeneous cellular populations: Simulation methods and mean-field analysis.

scientific article published on 22 July 2016

Stochastic quasi-steady state approximations for asymptotic solutions of the chemical master equation.

scientific article published in May 2014

Stochastic resonance in a suspension of magnetic dipoles under shear flow

scientific article published on 27 March 2001

Suppression of endogenous lipogenesis induces reversion of the malignant phenotype and normalized differentiation in breast cancer.

scientific article published on 18 May 2016

Surviving evolutionary escape on complex genotype-phenotype networks.

scientific article published on 23 May 2015

The dynamics of shapes of vesicle membranes with time dependent spontaneous curvature

scientific article published on 14 January 2020

The effects of intrinsic noise on the behaviour of bistable cell regulatory systems under quasi-steady state conditions. ⬇️

scientific article published in August 2015

The topology of robustness and evolvability in evolutionary systems with genotype-phenotype map

scientific article published on 30 April 2014

Towards whole-organ modelling of tumour growth.

scientific article published on June 2004

List of works by Tomas Alarcon

3D hybrid modelling of vascular network formation.

A cellular automaton model for tumour growth in inhomogeneous environment

A design principle for vascular beds: the effects of complex blood rheology

A mathematical model of Doxorubicin treatment efficacy for non-Hodgkin's lymphoma: investigation of the current protocol through theoretical modelling results.

A mathematical model of the effects of hypoxia on the cell-cycle of normal and cancer cells.

A multiscale model of complex endothelial cell dynamics in early angiogenesis

Accelerated geroncogenesis in hereditary breast-ovarian cancer syndrome

Age Structure Can Account for Delayed Logistic Proliferation of Scratch Assays

Age-structure as key to delayed logistic proliferation of scratch assays

Angiogenesis and vascular remodelling in normal and cancerous tissues.

Breast cancer dormancy can be maintained by small numbers of micrometastases.

Capillary Filling at the Microscale: Control of Fluid Front Using Geometry

Coarse-graining and hybrid methods for efficient simulation of stochastic multi-scale models of tumour growth

Comment on "Morphogenetic action through flux-limited spreading" by Verbeni, Sánchez, Mollica, Siegl-Cachedenier, Carleton, Guerrero, Ruiz i Altaba, and Soler

Computational modeling of angiogenesis: The importance of cell rearrangements during vascular growth

Energy transduction in periodically driven non-hermitian systems

Epigenetic regulation of cell fate reprogramming in aging and disease: A predictive computational model.

Evolutionary escape on complex genotype-phenotype networks.

From invasion to latency: intracellular noise and cell motility as key controls of the competition between resource-limited cellular populations.

Front microrheology of the non-Newtonian behaviour of blood: scaling theory of erythrocyte aggregation by aging.

Germline BRCA1 mutation reprograms breast epithelial cell metabolism towards mitochondrial-dependent biosynthesis: evidence for metformin-based "starvation" strategies in BRCA1 carriers.

Gerometabolites: the pseudohypoxic aging side of cancer oncometabolites.

Hybrid approaches for multiple-species stochastic reaction-diffusion models ⬇️

In vitro cell migration quantification method for scratch assays

Invasion in multi-type populations: the role of phenotypic robustness and fluctuations ⬇️

Mathematical models of the VEGF receptor and its role in cancer therapy.

Mathematical models of the fate of lymphoma B cells after antigen receptor ligation with specific antibodies.

Mesoscopic and continuum modelling of angiogenesis ⬇️

Metabostemness: Metaboloepigenetic reprogramming of cancer stem-cell functions

Metabostemness: a new cancer hallmark.

Minimum Action Path Theory Reveals the Details of Stochastic Transitions Out of Oscillatory States

Modelling aspects of cancer dynamics: a review

Modelling cell growth and its modulation of the G1/S transition.

Multiscale modelling of vascular tumour growth in 3D: the roles of domain size and boundary conditions

Noise-induced bistability in the fate of cancer phenotypic quasispecies: a bit-strings approach

Oncometabolic Nuclear Reprogramming of Cancer Stemness

Phase-field modelling of the dynamics of Z-ring formation in liposomes: Onset of constriction and coarsening

Quiescence: a mechanism for escaping the effects of drug on cell populations.

Robustness of differentiation cascades with symmetric stem cell division

Senescence-Inflammatory Regulation of Reparative Cellular Reprogramming in Aging and Cancer.

Stability analysis of multi-compartment models for cell production systems.

Stochastic modelling of the eradication of the HIV-1 infection by stimulation of latently infected cells in patients under highly active anti-retroviral therapy.

Stochastic modelling of viral blips in HIV-1-infected patients: effects of inhomogeneous density fluctuations

Stochastic models of receptor oligomerization by bivalent ligand.

Stochastic multi-scale models of competition within heterogeneous cellular populations: Simulation methods and mean-field analysis.

Stochastic quasi-steady state approximations for asymptotic solutions of the chemical master equation.

Stochastic resonance in a suspension of magnetic dipoles under shear flow

Suppression of endogenous lipogenesis induces reversion of the malignant phenotype and normalized differentiation in breast cancer.

Surviving evolutionary escape on complex genotype-phenotype networks.

The dynamics of shapes of vesicle membranes with time dependent spontaneous curvature

The effects of intrinsic noise on the behaviour of bistable cell regulatory systems under quasi-steady state conditions. ⬇️

The topology of robustness and evolvability in evolutionary systems with genotype-phenotype map

Towards whole-organ modelling of tumour growth.