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List of works by Mikko J Sillanpää

A Gaussian process model and Bayesian variable selection for mapping function-valued quantitative traits with incomplete phenotypic data

scientific article published on 01 October 2019

A bayesian mixed regression based prediction of quantitative traits from molecular marker and gene expression data.

scientific article

A decision rule for quantitative trait locus detection under the extended Bayesian LASSO model.

scientific article

A hierarchical bayesian approach to multi-trait clinical quantitative trait locus modeling.

scientific article published on 6 June 2012

A note on estimating the posterior density of a quantitative trait locus from a Markov chain Monte Carlo sample.

scientific article published in April 2002

A novel genomic region on chromosome 11 associated with fearfulness in dogs

scientific article published on 28 May 2020

A novel linkage-disequilibrium corrected genomic relationship matrix for SNP-heritability estimation and genomic prediction.

scientific article published on 14 December 2017

A robust multiple-locus method for quantitative trait locus analysis of non-normally distributed multiple traits.

scientific article published on 15 July 2015

ACEt: An R Package for Estimating Dynamic Heritability and Comparing Twin Models.

scientific article published on 6 September 2017

Across breed multi-trait random regression genomic predictions in the Nordic Red dairy cattle.

scientific article published on 19 July 2012

Advanced backcross-QTL analysis in spring barley (H. vulgare ssp. spontaneum) comparing a REML versus a Bayesian model in multi-environmental field trials

scientific article published on 11 April 2009

An Efficient Genome-Wide Multilocus Epistasis Search

scientific article

An application of Bayesian QTL mapping to early development in double haploid lines of rainbow trout including environmental effects

scientific article published on 01 December 2005

Analysis of phenotypic- and Estimated Breeding Values (EBV) to dissect the genetic architecture of complex traits in a Scots pine three-generation pedigree design

scientific article published on 10 November 2018

Associations between variation in CHRNA5-CHRNA3-CHRNB4, body mass index and blood pressure in the Northern Finland Birth Cohort 1966

scientific article

BAPS 2: enhanced possibilities for the analysis of genetic population structure.

scientific article published on 8 April 2004

Back to basics for Bayesian model building in genomic selection.

scientific article published on 2 May 2012

Backward simulation of ancestors of sampled individuals.

scientific article published in March 2005

Bayesian LASSO, scale space and decision making in association genetics

scientific article

Bayesian analysis of genetic differentiation between populations.

scientific article published on January 2003

Bayesian association-based fine mapping in small chromosomal segments.

scientific article published on 15 September 2004

Bayesian biomarker identification based on marker-expression proteomics data.

scientific article

Bayesian inference of genetic parameters based on conditional decompositions of multivariate normal distributions.

scientific article

Bayesian latent variable collapsing model for detecting rare variant interaction effect in twin study.

scientific article published on 9 April 2014

Bayesian mapping of genotype x expression interactions in quantitative and qualitative traits.

scientific article published on 3 May 2006

Bayesian prediction of breeding values by accounting for genotype-by-environment interaction in self-pollinating crops.

scientific article published in June 2009

Bayesian shrinkage analysis of QTLs under shape-adaptive shrinkage priors, and accurate re-estimation of genetic effects.

scientific article published on 29 June 2011

CONE: Community Oriented Network Estimation Is a Versatile Framework for Inferring Population Structure in Large Scale Sequencing Data.

scientific article

Combined linkage disequilibrium and linkage mapping: Bayesian multilocus approach

scientific article published on 20 November 2013

Constructing the parental linkage phase and the genetic map over distances <1 cM using pooled haploid DNA

scientific article published on 19 November 2005

Detection of Epistasis for Flowering Time Using Bayesian Multilocus Estimation in a Barley MAGIC Population.

scientific article published on 18 December 2017

Dynamic Quantitative Trait Locus Analysis of Plant Phenomic Data

scientific article

Efficient Markov chain Monte Carlo implementation of Bayesian analysis of additive and dominance genetic variances in noninbred pedigrees

scientific article published on June 2008

Estimating Modifying Effect of Age on Genetic and Environmental Variance Components in Twin Models

scientific article published on 11 February 2016

Estimating genealogies from unlinked marker data: a Bayesian approach

scientific article

Estimating haplotype frequencies by combining data from large DNA pools with database information.

scientific article

Estimating multilevel regional variation in excess mortality of cancer patients using integrated nested Laplace approximation

article

Estimating population haplotype frequencies from pooled DNA samples using PHASE algorithm.

scientific article

Estimation of additive genetic and environmental sources of quantitative trait variation using data on married couples and their siblings

scientific article

Estimation of quantitative trait locus effects with epistasis by variational Bayes algorithms

scientific article (publication date: 2012)

Fast genomic predictions via Bayesian G-BLUP and multilocus models of threshold traits including censored Gaussian data.

scientific article

Functional multi-locus QTL mapping of temporal trends in Scots pine wood traits

scientific article

Genetic basis of climatic adaptation in scots pine by bayesian quantitative trait locus analysis

scientific article

Genetic heterogeneity underlying variation in a locally adaptive clinal trait in Pinus sylvestris revealed by a Bayesian multipopulation analysis

scientific article published on 30 November 2016

Genetic parameters for claw health and feet and leg conformation traits in Finnish Ayrshire cows.

scientific article published on 15 May 2012

Hierarchical modeling of clinical and expression quantitative trait loci.

scientific article published on 23 July 2008

Impact of prior specifications in a shrinkage-inducing Bayesian model for quantitative trait mapping and genomic prediction

scientific article published on 08 July 2013

Impact of residual covariance structures on genomic prediction ability in multi-environment trials

scientific article published in PLoS ONE

Joint modeling of genetic association and population stratification using latent class models.

scientific article published in January 2001

Mapping quantitative trait loci from a single-tail sample of the phenotype distribution including survival data.

scientific article

Mathematics-assisted mapping in analysis of medical disease.

scientific article published in January 2002

Mobile road weather sensor calibration by sensor fusion and linear mixed models

scientific article published on 07 February 2019

Model choice in gene mapping: what and why.

scientific article published in June 2002

Multiple QTL mapping in related plant populations via a pedigree-analysis approach

scientific article published on 07 March 2002

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

scientific article

Overview of techniques to account for confounding due to population stratification and cryptic relatedness in genomic data association analyses.

scientific article

Prediction of complex human diseases from pathway-focused candidate markers by joint estimation of marker effects: case of chronic fatigue syndrome

scientific article published on 11 June 2015

Prioritizing covariates in the planning of future studies in the meta-analytic framework.

scientific article published on 14 October 2016

Reparametrization-based estimation of genetic parameters in multi-trait animal model using Integrated Nested Laplace Approximation.

scientific article published on 18 November 2015

Replication in genetic studies of complex traits.

scientific article

Scalable Nonparametric Prescreening Method for Searching Higher-Order Genetic Interactions Underlying Quantitative Traits

scientific article published on 04 October 2019

Stochastic search variable selection based on two mixture components and continuous-scale weighting

scientific article published on 10 December 2018

Swift block-updating EM and pseudo-EM procedures for Bayesian shrinkage analysis of quantitative trait loci.

scientific article published on 24 July 2012

The Collaborative Cross, a community resource for the genetic analysis of complex traits

article

Two novel genomic regions associated with fearfulness in dogs overlap human neuropsychiatric loci

scientific article published on 17 January 2019

Use of Wishart Prior and Simple Extensions for Sparse Precision Matrix Estimation

scientific article published in February 2016

Use of synteny to identify candidate genes underlying QTL controlling stomatal traits in faba bean (Vicia faba L.).

scientific article published on 4 September 2014

Using the unified relationship matrix adjusted by breed-wise allele frequencies in genomic evaluation of a multibreed population

scientific article published on 15 December 2013