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List of works by Marc D Auffret

Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen.

scientific article published on 28 February 2018

Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery

scientific article published on 02 August 2019

Establishment of a real-time PCR method for quantification of geosmin-producing Streptomyces spp. in recirculating aquaculture systems.

scientific article

Fat accretion measurements strengthen the relationship between feed conversion efficiency and Nitrogen isotopic discrimination while rumen microbial genes contribute little.

scientific article

Identification of Rumen Microbial Genes Involved in Pathways Linked to Appetite, Growth, and Feed Conversion Efficiency in Cattle

scientific article published on 08 August 2019

Identification, Comparison, and Validation of Robust Rumen Microbial Biomarkers for Methane Emissions Using Diverse Bos Taurus Breeds and Basal Diets.

scientific article published in January 2017

Impact of water quality on the bacterial populations and off-flavours in recirculating aquaculture systems

scientific article published on 08 January 2013

Importance of Rhodococcus strains in a bacterial consortium degrading a mixture of hydrocarbons, gasoline, and diesel oil additives revealed by metatranscriptomic analysis.

scientific article

MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs).

scientific article

Temperature sensitivity of soil respiration rates enhanced by microbial community response.

scientific article

The Role of Microbial Community Composition in Controlling Soil Respiration Responses to Temperature

scientific article

The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

scientific article published on 11 December 2017

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