List of works - Guillermo Rodrigo

A new frontier in synthetic biology: automated design of small RNA devices in bacteria.

scientific article published on 23 July 2013

A systems biology approach to the evolution of plant-virus interactions.

scientific article published on 30 March 2011

Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli.

scientific article

Asmparts: assembly of biological model parts.

scientific article published on December 2007

AutoBioCAD: Full Biodesign Automation of Genetic Circuits ⬇️

scientific article published on November 26, 2012

Bacterial Population Control with Macroscopic HKUST Crystals

scientific article published on 24 May 2019

Binary addition in a living cell based on riboregulation.

scientific article published on 19 July 2018

Boolean Computation in Plants Using Post-translational Genetic Control and a Visual Output Signal

scientific article published on 18 September 2018

Changes in the gene expression profile of Arabidopsis thaliana after infection with Tobacco etch virus

scientific article published on 7 August 2008

Computational design of digital and memory biological devices.

scientific article published on December 2007

Computational design of synthetic regulatory networks from a genetic library to characterize the designability of dynamical behaviors

scientific article

Deconstructing a multiple antibiotic resistance regulation through the quantification of its input function.

scientific article published on 6 October 2017

Describing the structural robustness landscape of bacterial small RNAs.

scientific article

Dynamic signal processing by ribozyme-mediated RNA circuits to control gene expression

scientific article published on 27 April 2015

Empirical model and in vivo characterization of the bacterial response to synthetic gene expression show that ribosome allocation limits growth rate.

scientific article

Empirical modeling of material composition and size in MOFs prepared with ligand mixtures

scientific article published on 01 February 2019

Evolutionary impact of copy number variation rates

scientific article published on 10 August 2017

Exploring the Dynamics and Mutational Landscape of Riboregulation with a Minimal Synthetic Circuit in Living Cells

scientific article

Full design automation of multi-state RNA devices to program gene expression using energy-based optimization

scientific article

Functionalization of an Antisense Small RNA.

scientific article published on 3 January 2016

Gene regulation by a protein translation factor at the single-cell level

scientific article published on 06 May 2022

Genetic Redundancies Enhance Information Transfer in Noisy Regulatory Circuits. ⬇️

scientific article

Identification, introgression, and validation of fruit volatile QTLs from a red-fruited wild tomato species

scientific article

Inferring the regulatory network of the miRNA-mediated response to biotic and abiotic stress in melon

scientific article published on 18 February 2019

Insights about collective decision-making at the genetic level

scientific article published on 16 December 2019

Integral control of plant gravitropism through the interplay of hormone signaling and gene regulation.

scientific article published on August 2011

Interaction network of tobacco etch potyvirus NIa protein with the host proteome during infection

scientific article published on February 2016

Intrinsic adaptive value and early fate of gene duplication revealed by a bottom-up approach

scientific article

MicroRNA precursors are not structurally robust but plastic.

scientific article published in January 2013

Model-based design of RNA hybridization networks implemented in living cells.

scientific article published in September 2017

Modulation of Intracellular O Concentration in Escherichia coli Strains Using Oxygen Consuming Devices

scientific article published on 11 July 2018

Molecular noise can minimize the collective sensitivity of a clonal heterogeneous cell population.

scientific article published on 30 December 2016

Molecular signatures of silencing suppression degeneracy from a complex RNA virus

scientific article published on 28 June 2021

Onset of virus systemic infection in plants is determined by speed of cell-to-cell movement and number of primary infection foci.

scientific article published on September 2014

Perspectives on the automatic design of regulatory systems for synthetic biology.

scientific article published on 27 February 2012

Post-transcriptional bursting in genes regulated by small RNA molecules

scientific article published on 01 March 2018

Regulatory RNA design through evolutionary computation and strand displacement.

scientific article published in January 2015

Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

scientific article published on 15 September 2009

RiboMaker: computational design of conformation-based riboregulation

scientific article

Robust dynamical pattern formation from a multifunctional minimal genetic circuit

scientific article

Structural discrimination of robustness in transcriptional feedforward loops for pattern formation.

scientific article

Suprathreshold Stochastic Resonance behind Cancer

scientific article published on 14 April 2018

Theoretical and experimental analysis of the forced LacI-AraC oscillator with a minimal gene regulatory model.

scientific article published in June 2013

Towards the automated engineering of a synthetic genome.

scientific article published on 28 May 2009

Viral Strain-Specific Differential Alterations in Arabidopsis Developmental Patterns.

scientific article

Viral fitness correlates with the magnitude and direction of the perturbation induced in the host's transcriptome: the tobacco etch potyvirus - tobacco case study.

scientific article published on 19 March 2018

Virus-host interactome: Putting the accent on how it changes

scientific article published on 19 December 2016

List of works by Guillermo Rodrigo

A new frontier in synthetic biology: automated design of small RNA devices in bacteria.

A systems biology approach to the evolution of plant-virus interactions.

Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli.

Asmparts: assembly of biological model parts.

AutoBioCAD: Full Biodesign Automation of Genetic Circuits ⬇️

Bacterial Population Control with Macroscopic HKUST Crystals

Binary addition in a living cell based on riboregulation.

Boolean Computation in Plants Using Post-translational Genetic Control and a Visual Output Signal

Changes in the gene expression profile of Arabidopsis thaliana after infection with Tobacco etch virus

Computational design of digital and memory biological devices.

Computational design of synthetic regulatory networks from a genetic library to characterize the designability of dynamical behaviors

Deconstructing a multiple antibiotic resistance regulation through the quantification of its input function.

Describing the structural robustness landscape of bacterial small RNAs.

Dynamic signal processing by ribozyme-mediated RNA circuits to control gene expression

Empirical model and in vivo characterization of the bacterial response to synthetic gene expression show that ribosome allocation limits growth rate.

Empirical modeling of material composition and size in MOFs prepared with ligand mixtures

Evolutionary impact of copy number variation rates

Exploring the Dynamics and Mutational Landscape of Riboregulation with a Minimal Synthetic Circuit in Living Cells

Full design automation of multi-state RNA devices to program gene expression using energy-based optimization

Functionalization of an Antisense Small RNA.

Gene regulation by a protein translation factor at the single-cell level

Genetic Redundancies Enhance Information Transfer in Noisy Regulatory Circuits. ⬇️

Identification, introgression, and validation of fruit volatile QTLs from a red-fruited wild tomato species

Inferring the regulatory network of the miRNA-mediated response to biotic and abiotic stress in melon

Insights about collective decision-making at the genetic level

Integral control of plant gravitropism through the interplay of hormone signaling and gene regulation.

Interaction network of tobacco etch potyvirus NIa protein with the host proteome during infection

Intrinsic adaptive value and early fate of gene duplication revealed by a bottom-up approach

MicroRNA precursors are not structurally robust but plastic.

Model-based design of RNA hybridization networks implemented in living cells.

Modulation of Intracellular O Concentration in Escherichia coli Strains Using Oxygen Consuming Devices

Molecular noise can minimize the collective sensitivity of a clonal heterogeneous cell population.

Molecular signatures of silencing suppression degeneracy from a complex RNA virus

Onset of virus systemic infection in plants is determined by speed of cell-to-cell movement and number of primary infection foci.

Perspectives on the automatic design of regulatory systems for synthetic biology.

Post-transcriptional bursting in genes regulated by small RNA molecules

Regulatory RNA design through evolutionary computation and strand displacement.

Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

RiboMaker: computational design of conformation-based riboregulation

Robust dynamical pattern formation from a multifunctional minimal genetic circuit

Structural discrimination of robustness in transcriptional feedforward loops for pattern formation.

Suprathreshold Stochastic Resonance behind Cancer

Theoretical and experimental analysis of the forced LacI-AraC oscillator with a minimal gene regulatory model.

Towards the automated engineering of a synthetic genome.

Viral Strain-Specific Differential Alterations in Arabidopsis Developmental Patterns.

Viral fitness correlates with the magnitude and direction of the perturbation induced in the host's transcriptome: the tobacco etch potyvirus - tobacco case study.

Virus-host interactome: Putting the accent on how it changes