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List of works by Yanni Sun

A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads ⬇️

scientific article published on June 19, 2013

A binning tool to reconstruct viral haplotypes from assembled contigs

scientific article published on 04 November 2019

A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data.

scientific article

A sensitive short read homology search tool for paired-end read sequencing data

scientific article published on 16 October 2017

Analysis of the Trypanosoma brucei EATRO 164 Bloodstream Guide RNA Transcriptome

scientific article

Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex.

scientific article published on 8 November 2013

Assemble CRISPRs from metagenomic sequencing data.

scientific article

Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes

scientific article published on 10 November 2014

CHEER: hierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning

scientific article published on 27 March 2020

Chain-RNA: a comparative ncRNA search tool based on the two-dimensional chain algorithm.

scientific article

De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding.

scientific article

Designing filters for fast-known NcRNA identification.

scientific article published in May 2012

Efficient known ncRNA search including pseudoknots.

scientific article

Fast and accurate microRNA search using CNN

scientific article published on 27 December 2019

FunGene: the functional gene pipeline and repository

scientific article published on October 2013

GPRED-GC: a Gene PREDiction model accounting for 5 '- 3' GC gradient

scientific article published on 24 December 2019

Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779

scientific article

Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy ⬇️

scientific article published on March 21, 2012

HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors ⬇️

scientific article published on May 24, 2011

Identifying TF-MiRNA Regulatory Relationships Using Multiple Features

scientific article published on 29 April 2015

Improve homology search sensitivity of PacBio data by correcting frameshifts

scientific article

Improving the sensitivity of long read overlap detection using grouped short k-mer matches

scientific article published on 04 April 2019

LncRNA-ID: Long non-coding RNA IDentification using balanced random forests.

scientific article published on 26 August 2015

MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations

scientific article published on 4 December 2013

MetaDomain: a profile HMM-based protein domain classification tool for short sequences

scientific article published on January 1, 2012

RNA-CODE: a noncoding RNA classification tool for short reads in NGS data lacking reference genomes

scientific article

Reconstructing 16S rRNA genes in metagenomic data

scientific article

Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes

scientific article published on 15 October 2019

Ribosomal Database Project: data and tools for high throughput rRNA analysis

scientific article

Rooted tRNAomes and evolution of the genetic code.

scientific article

TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data

scientific article published on 04 June 2019

The insect-phase gRNA transcriptome in Trypanosoma brucei

scientific article published on 29 October 2013

miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data.

scientific article

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