List of works by Ben Busby

A global benchmark study using affinity-based biosensors.

scientific article

Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa)

scientific article published on 01 July 2019

Characterization and Comparison of Two Binding Sites on Obscurin for Small Ankyrin 1 ⬇️

scientific article published on November 23, 2010

Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping

scientific article

Contribution of phage-derived genomic islands to the virulence of facultative bacterial pathogens

scientific article

DangerTrack: A scoring system to detect difficult-to-assess regions

scientific article

Effect of domestication on the spread of the [PIN+] prion in Saccharomyces cerevisiae

scientific article

Electrostatic interactions mediate binding of obscurin to small ankyrin 1: biochemical and molecular modeling studies.

scientific article

Extending TCGA queries to automatically identify analogous genomic data from dbGaP.

scientific article published on 24 March 2017

Hydrophobic residues in small ankyrin 1 participate in binding to obscurin.

scientific article

Integrated Informatics Analysis of Cancer-Related Variants

scientific article published on 01 March 2020

Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich's ataxia, and other rare iron-related diseases

scientific article published on 19 July 2019

Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive

scientific article published on 19 May 2020

Magic-BLAST, an accurate DNA and RNA-seq aligner for long and short reads

scholarly article published 13 August 2018

Magic-BLAST, an accurate RNA-seq aligner for long and short reads

scientific article published on 25 July 2019

Matchmaking in Bioinformatics.

scientific article published on 9 February 2018

MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis.

scientific article

Mitogen-activated protein kinase signaling causes malignant melanoma cells to differentially alter extracellular matrix biosynthesis to promote cell survival

scientific article published on 5 March 2016

NCBI's Virus Discovery Codeathon: Building "FIVE" -The Federated Index of Viral Experiments API Index

scientific article published on 10 December 2020

NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements

scientific article published on 16 September 2019

NovoGraph: Human genome graph construction from multiple long-read assemblies

scientific article published on 03 September 2018

Predicting drug-metagenome interactions: Variation in the microbial β-glucuronidase level in the human gut metagenomes

scientific article published on 07 January 2021

PubRunner: A light-weight framework for updating text mining results.

scientific article published on 2 May 2017

Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows

scientific article published on 01 August 2019

SeqAcademy: an educational pipeline for RNA-Seq and anchor-Seq analysis

scientific article published on 22 May 2018

Viewing RNA-seq data on the entire human genome.

scientific article published on 28 April 2017

dbVar structural variant cluster set for data analysis and variant comparison ⬇️

scientific article

geneHummus: an R package to define gene families and their expression in legumes and beyond

scientific article published on 18 July 2019

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