List of works by Marcus Ludwig

'Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics

scientific article

Acclimation of the Global Transcriptome of the Cyanobacterium Synechococcus sp. Strain PCC 7002 to Nutrient Limitations and Different Nitrogen Sources

scientific article published on 11 April 2012

Altered carbohydrate metabolism in glycogen synthase mutants of Synechococcus sp. strain PCC 7002: Cell factories for soluble sugars.

scientific article

Bayesian networks for mass spectrometric metabolite identification via molecular fingerprints.

scientific article published in July 2018

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

scientific article published on 16 November 2020

Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree

scientific article published on 5 May 2020

Cheminformatics for Users

chapter in a proceedings

ChlR protein of Synechococcus sp. PCC 7002 is a transcription activator that uses an oxygen-sensitive [4Fe-4S] cluster to control genes involved in pigment biosynthesis

scientific article

Comparison of the membrane-bound [NiFe] hydrogenases from R. eutropha H16 and D. vulgaris Miyazaki F in the oxidized ready state by pulsed EPR.

scientific article published on 15 January 2010

Concerted action of two novel auxiliary proteins in assembly of the active site in a membrane-bound [NiFe] hydrogenase

scientific article

Database-independent molecular formula annotation using Gibbs sampling through ZODIAC

scientific article published in 2020

De Novo Molecular Formula Annotation and Structure Elucidation Using SIRIUS 4

scientific article published on 01 January 2020

Differential accumulation of nif structural gene mRNA in Azotobacter vinelandii

scientific article

Electricity from low-level H2 in still air--an ultimate test for an oxygen tolerant hydrogenase

scientific article published on 9 November 2006

Enzymatic oxidation of H2 in atmospheric O2: the electrochemistry of energy generation from trace H2 by aerobic microorganisms.

scientific article

Faster Mass Decomposition

scientific article published in 2013

Feature-based molecular networking in the GNPS analysis environment

scientific article published on 24 August 2020

Functional and structural characterization of the 2/2 hemoglobin from Synechococcus sp. PCC 7002

scientific article

Fur-type transcriptional repressors and metal homeostasis in the cyanobacterium Synechococcus sp. PCC 7002.

scientific article

H2 conversion in the presence of O2 as performed by the membrane-bound [NiFe]-hydrogenase of Ralstonia eutropha

scientific article published on April 2010

High-confidence structural annotation of metabolites absent from spectral libraries

scientific article published on 14 October 2021

Hydrogen production under aerobic conditions by membrane-bound hydrogenases from Ralstonia species

scientific article published on 29 July 2008

Impact of amino acid substitutions near the catalytic site on the spectral properties of an O2-tolerant membrane-bound [NiFe] hydrogenase.

scientific article published in April 2010

MAD HATTER Correctly Annotates 98% of Small Molecule Tandem Mass Spectra Searching in PubChem

scientific article published in 2023

Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat.

scientific article

Monitoring catalysis of the membrane-bound hydrogenase from Ralstonia eutropha H16 by surface-enhanced IR absorption spectroscopy.

scientific article published in January 2009

Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.

scientific article published on 27 August 2016

Occurrence of hydrogenases in cyanobacteria and anoxygenic photosynthetic bacteria: implications for the phylogenetic origin of cyanobacterial and algal hydrogenases

scientific article published on 10 November 2006

Oxygen-tolerant H2Oxidation by Membrane-bound [NiFe] Hydrogenases ofRalstoniaSpecies

scientific article published in Journal of Biological Chemistry

Publisher Correction: Database-independent molecular formula annotation using Gibbs sampling through ZODIAC

correction of a scholarly article

Roles of xanthophyll carotenoids in protection against photoinhibition and oxidative stress in the cyanobacterium Synechococcus sp. strain PCC 7002.

scientific article published on 16 July 2010

SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information

scientific article published on 18 March 2019

Spectroscopic insights into the oxygen-tolerant membrane-associated [NiFe] hydrogenase of Ralstonia eutropha H16

scientific article published on 20 March 2009

Studying Charge Migration Fragmentation of Sodiated Precursor Ions in Collision-Induced Dissociation at the Library Scale

scientific article published on 13 November 2020

Synechococcus sp. Strain PCC 7002 Transcriptome: Acclimation to Temperature, Salinity, Oxidative Stress, and Mixotrophic Growth Conditions

scientific article

Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra

scientific article published on 23 November 2020

Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring

scientific article (publication date: September 2013)

Transcription Profiling of the Model Cyanobacterium Synechococcus sp. Strain PCC 7002 by Next-Gen (SOLiD™) Sequencing of cDNA

scientific article

Transcriptional profiling of nitrogen fixation in Azotobacter vinelandii

scientific article

Zn2+-Inducible Expression Platform for Synechococcus sp. Strain PCC 7002 Based on the smtA Promoter/Operator and smtB Repressor.

scientific article published on 11 November 2016

[NiFe] and [FeS] cofactors in the membrane-bound hydrogenase of Ralstonia eutropha investigated by X-ray absorption spectroscopy: insights into O(2)-tolerant H(2) cleavage.

scientific article published on 10 June 2011

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