List of works - Emilie MULLER

A biomolecular isolation framework for eco-systems biology.

scientific article

A hundred years of activated sludge: time for a rethink

scientific article

A year of monitoring 20 mesophilic full-scale bioreactors reveals the existence of stable but different core microbiomes in bio-waste and wastewater anaerobic digestion systems

scientific article published on 19 July 2018

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

scientific article

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

scientific article

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

scientific article

Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1

scientific article

Complete genome sequences of six strains of the genus Methylobacterium

scientific article

Condensing the omics fog of microbial communities.

scientific article

Determining Microbial Niche Breadth in the Environment for Better Ecosystem Fate Predictions

scientific article published on 11 June 2019

Dichloromethane Degradation Pathway from Unsequenced <i>Hyphomicrobium</i> sp. MC8b Rapidly Explored by Pan-Proteomics

scientific article published on 27 November 2020

Dichloromethane-degrading bacteria in the genomic age ⬇️

scientific article published on February 1, 2011

Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics

scientific article published in Scientific Reports

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ.

scientific article published on 18 October 2017

Functional genomics of dichloromethane utilization in Methylobacterium extorquens DM4

scientific article published on 19 August 2011

Genes of the N-methylglutamate pathway are essential for growth of Methylobacterium extorquens DM4 with monomethylamine

scientific article published on 28 March 2014

Genome Sequence of the Dichloromethane-Degrading Bacterium Hyphomicrobium sp. Strain GJ21.

scientific article published on 27 July 2017

Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant.

scientific article

Hopanoid-free Methylobacterium extorquens DM4 overproduces carotenoids and has widespread growth impairment.

scientific article

IMP: a pipeline for reproducible metagenomic and metatranscriptomic analyses

IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses.

scientific article

Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract.

scientific article published on 21 June 2016

In situ phenotypic heterogeneity among single cells of the filamentous bacterium Candidatus Microthrix parvicella

scientific article published on 27 October 2015

Integrated meta-omic analyses of the gastrointestinal tract microbiome in patients undergoing allogeneic hematopoietic stem cell transplantation

scientific article

Integrated omics for the identification of key functionalities in biological wastewater treatment microbial communities

scientific article published on 12 February 2015

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

scientific article published on 19 October 2020

Lipid-based biofuel production from wastewater.

scientific article published on 23 April 2014

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics ⬇️

scientific article published on 02 November 2020

Sequential Isolation of DNA, RNA, Protein, and Metabolite Fractions from Murine Organs and Intestinal Contents for Integrated Omics of Host–Microbiota Interactions

scientific article published on 01 January 2018

Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample.

scientific article published in January 2013

Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia

scientific article

List of works by Emilie MULLER

A biomolecular isolation framework for eco-systems biology.

A hundred years of activated sludge: time for a rethink

A year of monitoring 20 mesophilic full-scale bioreactors reveals the existence of stable but different core microbiomes in bio-waste and wastewater anaerobic digestion systems

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1

Complete genome sequences of six strains of the genus Methylobacterium

Condensing the omics fog of microbial communities.

Determining Microbial Niche Breadth in the Environment for Better Ecosystem Fate Predictions

Dichloromethane Degradation Pathway from Unsequenced <i>Hyphomicrobium</i> sp. MC8b Rapidly Explored by Pan-Proteomics

Dichloromethane-degrading bacteria in the genomic age ⬇️

Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ.

Functional genomics of dichloromethane utilization in Methylobacterium extorquens DM4

Genes of the N-methylglutamate pathway are essential for growth of Methylobacterium extorquens DM4 with monomethylamine

Genome Sequence of the Dichloromethane-Degrading Bacterium Hyphomicrobium sp. Strain GJ21.

Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant.

Hopanoid-free Methylobacterium extorquens DM4 overproduces carotenoids and has widespread growth impairment.

IMP: a pipeline for reproducible metagenomic and metatranscriptomic analyses

IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses.

Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract.

In situ phenotypic heterogeneity among single cells of the filamentous bacterium Candidatus Microthrix parvicella

Integrated meta-omic analyses of the gastrointestinal tract microbiome in patients undergoing allogeneic hematopoietic stem cell transplantation

Integrated omics for the identification of key functionalities in biological wastewater treatment microbial communities

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

Lipid-based biofuel production from wastewater.

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics ⬇️

Sequential Isolation of DNA, RNA, Protein, and Metabolite Fractions from Murine Organs and Intestinal Contents for Integrated Omics of Host–Microbiota Interactions

Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample.

Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia

The sequential isolation of metabolites, RNA, DNA, and proteins from a single, undivided mixed microbial community sample