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List of works by Roman Tuma

A two-stage mechanism of viral RNA compaction revealed by single molecule fluorescence ⬇️

scientific article published on 19 February 2013

Assembly Dynamics of the Nucleocapsid Shell Subunit (P8) of Bacteriophage φ6†

article

Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation

scientific article

Bacteriophage MS2 genomic RNA encodes an assembly instruction manual for its capsid ⬇️

scientific article published on January 2016

Biophysical Characterization of Chromatin Remodeling Protein CHD4.

scientific article published on January 2016

Characterization of subunit-specific interactions in a double-stranded RNA virus: Raman difference spectroscopy of the phi6 procapsid

scientific article published in October 2002

Concerted action of the PHD, chromo and motor domains regulates the human chromatin remodelling ATPase CHD4.

scientific article published on 27 June 2012

Conformation, stability, and active‐site cysteine titrations of Escherichia coli D26A thioredoxin probed by Raman spectroscopy ⬇️

scientific article published on January 1, 1998

Cooperative mechanism of RNA packaging motor

scientific article

Cut-and-Run: A Distinct Mechanism by which V(D)J Recombination Causes Genome Instability

scientific article published on 21 March 2019

Detection of intermediates and kinetic control during assembly of bacteriophage P22 procapsid

scientific article published on 14 June 2008

Distortion of the bilayer and dynamics of the BAM complex in lipid nanodiscs

scientific article published on 14 December 2020

Domain movements of the enhancer-dependent sigma factor drive DNA delivery into the RNA polymerase active site: insights from single molecule studies ⬇️

scientific article published on 19 February 2014

Dynamic action of the Sec machinery during initiation, protein translocation and termination revealed by single molecule fluorescence

Dynamic action of the Sec machinery during initiation, protein translocation and termination. ⬇️

scientific article published on 7 June 2018

Effects of membrane curvature and pH on proton pumping activity of single cytochrome bo3 enzymes ⬇️

scientific article published on 17 June 2017

Enzymatic mechanism of RNA translocation in double-stranded RNA bacteriophages

scientific article published on 6 October 2003

Estimating Constraints for Protection Factors from HDX-MS Data

scientific article published on 05 March 2019

Evidence of PPII-like helical conformation and glass transition in a self-assembled solid-state polypeptide-surfactant complex: poly(L-histidine)/docylbenzenesulfonic acid

scientific article published on 18 April 2008

Evidence that avian reovirus σNS is an RNA chaperone: implications for genome segment assortment ⬇️

scientific article published on 24 June 2015

Evidence that viral RNAs have evolved for efficient, two-stage packaging

scientific article

Folding and assembly of large macromolecular complexes monitored by hydrogen-deuterium exchange and mass spectrometry

scientific article published on 4 April 2008

Functional dynamics of hexameric helicase probed by hydrogen exchange and simulation ⬇️

scientific article published on August 2014

Functional visualization of viral molecular motor by hydrogen-deuterium exchange reveals transient states

scientific article published on 17 April 2005

HBV RNA pre-genome encodes specific motifs that mediate interactions with the viral core protein that promote nucleocapsid assembly ⬇️

scientific article published on 19 June 2017

Hexanol-induced order-disorder transitions in lamellar self-assembling aggregates of bacteriochlorophyll c in Chlorobium tepidum chlorosomes

scientific article

Hydrogen exchange protection factors can be extracted from sparse HDX-MS data

In VitroAssembly of Bacteriophages: Folding, Kinetic Control and Intermediates

scholarly article published 2005

Inducing protein aggregation by extensional flow ⬇️

scientific article published on 17 April 2017

Inter-domain dynamics in the chaperone SurA and multi-site binding to its outer membrane protein clients

scientific article published on 01 May 2020

Internal structure of chlorosomes from brown-colored chlorobium species and the role of carotenoids in their assembly

scientific article published on 26 May 2006

Mechanism of RNA Packaging Motor ⬇️

scientific article published on January 1, 2012

Mechanism of capsid maturation in a double-stranded DNA virus ⬇️

scientific article published on August 18, 1998

Mechanisms of virus assembly probed by Raman spectroscopy: the icosahedral bacteriophage P22 ⬇️

scientific article published on October 1, 1997

Mechanistic insight into the RNA stimulated-ATPase activity of tick-borne encephalitis virus helicase

scientific article published in 2022

Mutations in RNA Polymerase Bridge Helix and Switch Regions Affect Active-Site Networks and Transcript-Assisted Hydrolysis ⬇️

scientific article published on 10 September 2015

Order and disorder in crystals of hexameric NTPases from dsRNA bacteriophages

scientific article published on 27 November 2003

Packaging signals in single-stranded RNA viruses: nature's alternative to a purely electrostatic assembly mechanism ⬇️

scientific article published on March 2013

Production, crystallization and preliminary X-ray crystallographic studies of the bacteriophage phi 12 packaging motor

scientific article published on 25 February 2004

RNA packaging device of double-stranded RNA bacteriophages, possibly as simple as hexamer of P4 protein.

scientific article published on 8 September 2003

RNA remodeling by hexameric RNA helicases

scientific article

Revealing the density of encoded functions in a viral RNA

scientific article

Rewriting nature's assembly manual for a ssRNA virus ⬇️

scientific article published on 30 October 2017

Self-assembly of double-stranded RNA bacteriophages

scientific article published on April 2004

Single Enzyme Experiments Reveal a Long-Lifetime Proton Leak State in a Heme-Copper Oxidase ⬇️

scientific article

Sizes of Long RNA Molecules Are Determined by the Branching Patterns of Their Secondary Structures. ⬇️

scientific article

Solution Structure of Bacteriophage PRD1 Vertex Complex

scientific article published in Journal of Biological Chemistry

Step length measurement--theory and simulation for tethered bead constant-force single molecule assay

scientific article published on 11 May 2007

Stochastic detection of motor protein-RNA complexes by single-channel current recording

scientific article published in October 2007

Structural and functional roles of carotenoids in chlorosomes

scientific article published on 8 February 2013

Structural basis of mechanochemical coupling in a hexameric molecular motor

scientific article

Structure and NTPase activity of the RNA-translocating protein (P4) of bacteriophage φ6 ⬇️

scientific article published on June 5, 1998

Structure of chlorosomes from the green filamentous bacterium Chloroflexus aurantiacus

scientific article

Structure of the Murray Valley encephalitis virus RNA helicase at 1.9 Å resolution

scientific article

TALE proteins bind to both active and inactive chromatin ⬇️

scientific article published on February 2014

The lamellar spacing in self-assembling bacteriochlorophyll aggregates is proportional to the length of the esterifying alcohol

scientific article published on 20 March 2010

The two ADF-H domains of twinfilin play functionally distinct roles in interactions with actin monomers

scientific article

Tracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution ⬇️

scientific article

Two-way communication between SecY and SecA suggests a Brownian ratchet mechanism for protein translocation ⬇️

scientific article published on 16 May 2016

pH-induced molecular shedding drives the formation of amyloid fibril-derived oligomers ⬇️

scientific article published on 20 April 2015

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