List of works - Anika Oellrich

A common layer of interoperability for biomedical ontologies based on OWL EL.

scientific article

A gene expression resource generated by genome-wide lacZ profiling in the mouse

scientific article

An ontology approach to comparative phenomics in plants

scientific article

Automatic concept recognition using the human phenotype ontology reference and test suite corpora

scientific article

Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP.

scientific article published on 16 October 2013

Characterisation of mental health conditions in social media using Informed Deep Learning

scientific article published on 22 March 2017

Concept selection for phenotypes and diseases using learn to rank

scientific article published on June 2015

Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning

scientific article published on 16 May 2017

Disease insights through cross-species phenotype comparisons

scientific article

Don't Let Notes Be Misunderstood: A Negation Detection Method for Assessing Risk of Suicide in Mental Health Records

scientific article published in 2016

Finding our way through phenotypes

scientific article

Generation of silver standard concept annotations from biomedical texts with special relevance to phenotypes

scientific article

Improved exome prioritization of disease genes through cross-species phenotype comparison

scientific article

Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases

scientific article

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning

scientific article

Interoperability between phenotype and anatomy ontologies

scientific article

Learning to recognize phenotype candidates in the auto-immune literature using SVM re-ranking

scientific article (publication date: 2013)

Linking gene expression to phenotypes via pathway information

scientific article published on 11 April 2015

Linking tissues to phenotypes using gene expression profiles

scientific article published on 13 March 2014

Mining Social Media Data to Study the Consequences of Dementia Diagnosis on Caregivers and Relatives (Preprint)

scholarly article published 26 March 2018

PhenoDigm: analyzing curated annotations to associate animal models with human diseases

scientific article published on 9 May 2013

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases

scientific article

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology

scientific article published on 21 September 2012

Relations as patterns: bridging the gap between OBO and OWL

scientific article

Reporting phenotypes in mouse models when considering body size as a potential confounder

scientific article

Special issue on bio-ontologies and phenotypes

scientific article

Text-mining solutions for biomedical research: enabling integrative biology

scientific article

The digital revolution in phenotyping

scientific article published on 29 September 2015

The influence of disease categories on gene candidate predictions from model organism phenotypes

scientific article

The language of mental health problems in social media

scientific article published in 2016

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop

scientific article published on 12 December 2016

Toward knowledge support for analysis and interpretation of complex traits

scientific article (publication date: 2013)

Use of animal models for exome prioritization of rare disease genes

article

Using association rule mining to determine promising secondary phenotyping hypotheses

scientific article

Using silver and semi-gold standard corpora to compare open named entity recognisers

scholarly article published December 2013

List of works by Anika Oellrich

A common layer of interoperability for biomedical ontologies based on OWL EL.

A gene expression resource generated by genome-wide lacZ profiling in the mouse

An ontology approach to comparative phenomics in plants

Automatic concept recognition using the human phenotype ontology reference and test suite corpora

Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP.

Characterisation of mental health conditions in social media using Informed Deep Learning

Concept selection for phenotypes and diseases using learn to rank

Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning

Disease insights through cross-species phenotype comparisons

Don't Let Notes Be Misunderstood: A Negation Detection Method for Assessing Risk of Suicide in Mental Health Records

Finding our way through phenotypes

Generation of silver standard concept annotations from biomedical texts with special relevance to phenotypes

Improved exome prioritization of disease genes through cross-species phenotype comparison

Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning

Interoperability between phenotype and anatomy ontologies

Learning to recognize phenotype candidates in the auto-immune literature using SVM re-ranking

Linking gene expression to phenotypes via pathway information

Linking tissues to phenotypes using gene expression profiles

Mining Social Media Data to Study the Consequences of Dementia Diagnosis on Caregivers and Relatives (Preprint)

PhenoDigm: analyzing curated annotations to associate animal models with human diseases

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology

Relations as patterns: bridging the gap between OBO and OWL

Reporting phenotypes in mouse models when considering body size as a potential confounder

Special issue on bio-ontologies and phenotypes

Text-mining solutions for biomedical research: enabling integrative biology

The digital revolution in phenotyping

The influence of disease categories on gene candidate predictions from model organism phenotypes

The language of mental health problems in social media

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop

Toward knowledge support for analysis and interpretation of complex traits

Use of animal models for exome prioritization of rare disease genes

Using association rule mining to determine promising secondary phenotyping hypotheses

Using silver and semi-gold standard corpora to compare open named entity recognisers