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List of works by Jesualdo Tomás Fernández-Breis

A Social-Empowered Platform for Gathering Semantic Information

A generative tool for building health applications driven by ISO 13606 archetypes

scientific article published on 04 October 2011

A model-driven approach for representing clinical archetypes for Semantic Web environments

scientific article published on 23 May 2008

A platform for exploration into chaining of web services for clinical data transformation and reasoning

scientific article

Accessing Touristic Knowledge Bases through a Natural Language Interface

scholarly article by Juana María Ruiz-Martínez et al published 2009 in Lecture Notes in Computer Science

An application of intelligent techniques and semantic web technologies in e-learning environments

An approach for incremental knowledge acquisition from text

An approach for the semantic interoperability of ISO EN 13606 and OpenEHR archetypes

scientific article

An incremental approach for discovering medical knowledge from texts

An incremental knowledge acquisition-based system for supporting decisions in biomedical domains

scientific article published on 8 December 2009

An ontology, intelligent agent-based framework for the provision of semantic web services

Analysis and visualization of disease courses in a semantically-enabled cancer registry.

scientific article published on 29 September 2017

Analysis of readability and structural accuracy in SNOMED CT

scientific article published on 15 December 2020

Angel: Towards a Multi-level Method for the Analysis of Variants in Individual Genomes

Approaching the axiomatic enrichment of the Gene Ontology from a lexical perspective

scientific article

BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

scientific article

Bridging the Gap between the Logical and the Physical Worlds

article

Case Report Form based on semantic Web technologies ⬇️

Clinical data interoperability based on archetype transformation

scientific article

ColPortal, an integrative multiomic platform for analysing epigenetic interactions in colorectal cancer

scientific article published on 31 October 2019

Combining Archetypes, Ontologies and Formalization Enables Automated Computation of Quality Indicators

scientific article published on January 2017

Combining Semantic Web technologies with Multi-Agent Systems for integrated access to biological resources

scientific article published on 23 May 2008

Correction: Quorum sensing and stress-activated MAPK signaling repress yeast to hypha transition in the fission yeast Schizosaccharomyces japonicus

scientific article published on 19 July 2019

Easy-to-use Semantic Search of Pharmacological Data ⬇️

scholarly article by Angel Esteban-Gil & Jesualdo Tomás Fernández-Breis published 19 February 2017 in Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences

Evaluating the Good Ontology Design Guideline (GoodOD) with the ontology quality requirements and evaluation method and metrics (OQuaRE)

scientific article

Evaluation of ontology structural metrics based on public repository data

scientific article published on 04 February 2019

Evaluation of the OQuaRE framework for ontology quality

article

Financial news semantic search engine

article published in 2011

Flexible Semantic Querying of Clinical Archetypes

article published in 2010

From lexical regularities to axiomatic patterns for the quality assurance of biomedical terminologies and ontologies

scientific article published on 14 June 2018

Gearing up to handle the mosaic nature of life in the quest for orthologs

scientific article published on 30 August 2017

Generation of open biomedical datasets through ontology-driven transformation and integration processes

scientific article

HURON: A Quantitative Framework for Assessing Human Readability in Ontologies

scientific article published in January 2023

Improving Air Quality Zoning Through Deep Learning and Hyperlocal Measurements

scientific article published in January 2024

Informal learning through expertise mining in the social web

Knowledge Technologies-Based Multi-Agent System for Semantic Web Services Environments

Leveraging Logical Rules for Efficacious Representation of Large Orthology Datasets ⬇️

article

Leveraging electronic healthcare record standards and semantic web technologies for the identification of patient cohorts

scientific article published on 09 August 2013

LinkEHR-Ed: a multi-reference model archetype editor based on formal semantics

scientific article published on 21 April 2009

Linking genome annotation projects with genetic disorders using ontologies

scientific article

Lost in translation: bioinformatic analysis of variations affecting the translation initiation codon in the human genome

scientific article published on 01 November 2018

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows

scientific article published on 4 January 2013

OPPL-Galaxy: enhancing ontology exploitation in galaxy with OPPL

OWL-based reasoning methods for validating archetypes

scientific article published on 14 December 2012

OntoGenix: Leveraging Large Language Models for enhanced ontology engineering from datasets

scientific article published in May 2025

Ontology learning from biomedical natural language documents using UMLS

Populating Ontologies in the eTourism Domain

scholarly article published December 2008

Preliminary Analysis of the OBO Foundry Ontologies and Their Evolution Using OQuaRE.

scientific article published on January 2017

Prioritising lexical patterns to increase axiomatisation in biomedical ontologies. The role of localisation and modularity

scientific article published on 04 July 2014

Publishing Biomedical Predication Repository About MeSH Co-Occurrences in MEDLINE.

scientific article published on January 2016

Quorum sensing and stress-activated MAPK signaling repress yeast to hypha transition in the fission yeast Schizosaccharomyces japonicus

scientific article published on 31 May 2019

Recommendation of Personalized Learning Contents Supported by Semantic Web Technologies

Recommendation of standardized health learning contents using archetypes and semantic web technologies

scientific article published on January 2012

Semantic Web Technologies for supporting learning assessment

Semantic integration of information about orthologs and diseases: the OGO system.

scientific article published on 16 August 2011

Sequence-oriented sensitive analysis for PM2.5 exposure and risk assessment using interactive process mining

scientific article published on 24 August 2023

SocialBROKER: A collaborative social space for gathering semantically-enhanced financial information

Suggesting Missing Relations in Biomedical Ontologies Based on Lexical Regularities

scientific article published on January 2016

Supporting the analysis of ontology evolution processes through the combination of static and dynamic scaling functions in OQuaRE

scientific article published on 17 October 2016

Technologies and Best Practices for Building Bio-Ontologies

The Orthology Ontology: development and applications

scientific article

Towards Adaptable Semantic Grid Services Execution Environments

Towards ISO 13606 and openEHR archetype-based semantic interoperability.

scientific article published on January 2009

Towards cooperative frameworks for modeling and integrating biological processes knowledge.

scientific article published on September 2004

Towards the Semantic Standardization of Orthology Content ⬇️

Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes

scientific article published on 10 February 2015

Using Machine Learning for Predicting the Effect of Mutations in the Initiation Codon

scientific article published in November 2022

Using semantic technologies to promote interoperability between electronic healthcare records' information models

scientific article published on January 2006

Using the ResearchEHR platform to facilitate the practical application of the EHR standards

scientific article

Validation of the openEHR archetype library by using OWL reasoning

scientific article published on January 1, 2011

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