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List of works by Ramona L Walls

A High-throughput Data Ingest Pipeline for Semantic Data-stores

scientific article published in 2017

A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data

scientific article published in 2022

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

article

Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability

scientific article published on 3 October 2023

Alleviating Environmental Health Disparities Through Community Science and Data Integration

scientific article published on 10 June 2021

An Update on the Plant Phenology Ontology and Plant Phenology Data Integration

scientific article published in 2017

An extension of the Plant Ontology project supporting wood anatomy and development research

scholarly article

An ontology approach to comparative phenomics in plants

scientific article

Angiosperm leaf vein patterns are linked to leaf functions in a global-scale data set.

scientific article

Best Practices for Aggregating and Reporting Individual Traits

scientific article published in 2021

COVID-19 pandemic reveals the peril of ignoring metadata standards

scientific article published on 19 June 2020

Clarifying concepts and terms in biodiversity informatics

scientific article

Climate change, extinction, and Sky Island biogeography in a montane lizard

scientific article published on 14 May 2019

Community next steps for making globally unique identifiers work for biocollections data

scientific article

Crowds Replicate Performance of Scientific Experts Scoring Phylogenetic Matrices of Phenotypes

scientific article published in January 2018

Degree of Establishment Controlled Vocabulary List of Terms ⬇️

provides terms that should be used as values for dwc:degreeOfEstablishment and dwciri:degreeOfEstablishment

Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions

scientific article published on 13 March 2019

Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants.

scientific article

Emerging semantics to link phenotype and environment

scientific article

Establishing a Common Nutritional Vocabulary - From Food Production to Diet

scientific article published in 2022

Establishment Means Controlled Vocabulary List of Terms ⬇️

provides terms that should be used as values for dwc:establishmentMeans and dwciri:establishmentMeans

Fertility, root reserves and the cost of inducible defenses in the perennial plant Solanum carolinense

scientific article

Finding our way through phenotypes

scientific article

From Field Observations and Plant Specimens to a Trans-continental Knowledge Base: Efficient, semantically rich integration of highly heterogeneous plant phenological data

scientific article published on 2 July 2019

FuTRES: Functional Trait Resource for Environmental Studies

scientific article published on 18 June 2019

Humboldt Core - toward a standardized capture of biological inventories for biodiversity monitoring, modeling and assessment

scientific article published on 27 September 2017

Hybridization and Plasticity Contribute to Divergence Among Coastal and Wetland Populations of Invasive Hybrid Japanese Knotweed s.l. (Fallopia spp.)

article by Ramona L Walls published 15 July 2009 in Estuaries and Coasts

Identifier Services: Modeling and Implementing Distributed Data Management in Cyberinfrastructure

scientific article published on 26 April 2019

Identifier Services: Tracking Objects and Metadata Across Time and Distributed Storage Systems ⬇️

Conference Paper publshed in Proceedings of the 2016 International Conference on Dublin Core and Metadata Applications, DC 2016, Copenhagen, Denmark, October 13-16, 2016

Improving Darwin Core for research and management of alien species

scholarly article

Integrating ABCD and DarwinCore: Toward a better foundation for biodiversity information standards

scientific article published in 2019

Integrating herbarium specimen observations into global phenology data systems

scientific article published on 07 March 2019

Internet of Samples

scientific article published on 17 October 2021

Internet of Samples: Progress report

scientific article published in 2021

Invasive Organisms Information: A proposed TDWG Task Group

scholarly article

Knowledge representation and data sharing to unlock crop variation for nutritional food security

scientific article published on 16 March 2020

MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms

scientific article published in 2022

Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets

article

Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets

scientific article published on 12 February 2020

Meeting report: Identifying practical applications of ontologies for biodiversity informatics.

scientific article published on 17 May 2015

Meeting report: advancing practical applications of biodiversity ontologies

scientific article

MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions

scientific article

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach

scientific article

Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier

scientific article published on 28 November 2018

Next-generation phenomics for the Tree of Life

scientific article (publication date: 26 June 2013)

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

scientific article

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

scientific article published on 13 October 2021

Ontologies as integrative tools for plant science

scientific article

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies

preprint published on 06 July 2022

Pathway Controlled Vocabulary List of Terms ⬇️

provides terms that should be used as values for dwc:pathway and dwciri:pathway

Plant specimen contextual data consensus

scientific article

Plasticity in salt tolerance traits allows for invasion of novel habitat by Japanese knotweed s. l. (Fallopia japonica and F.xbohemica, Polygonaceae).

scientific article published in August 2008

Publisher Correction: Open Science principles for accelerating trait-based science across the Tree of Life

scientific article published on 01 April 2020

Sample Identifiers and Metadata to Support Data Management and Reuse in Multidisciplinary Ecosystem Sciences

scientific article published on 18 March 2021

Semantic Interoperability Solutions for the Essential Variables: Focus on biodiversity

scientific article

Semantically Defining Populations for 'Omics Research

scientific article published in 2017

Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies

scientific article

Specimen Identifiers in Related Disciplines: What can Biodiversity Learn from and Offer to Other Fields?

scientific article published on 21 May 2018

Ten simple rules to cultivate transdisciplinary collaboration in data science

scientific article

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

The Open Traits Network: Using Open Science principles to accelerate trait-based science across the Tree of Life ⬇️

scientific article published on 17 February 2020

The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species

scientific article published on 04 June 2019

The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data.

scientific article

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation

scientific article

The founding charter of the Omic Biodiversity Observation Network (Omic BON)

scientific article published in 2022

The future of rare disease drug development: the rare disease cures accelerator data analytics platform (RDCA-DAP)

scientific article published in 2023

The plant ontology as a tool for comparative plant anatomy and genomic analyses

scientific article published on 5 December 2012

Towards global data products of Essential Biodiversity Variables on species traits

article by Daniel Kissling et al published 17 September 2018 in Nature Ecology and Evolution

Transforming the study of organisms: Phenomic data models and knowledge bases

scientific article published on 24 November 2020

Unity in Variety: Developing a collection description standard by consensus

scientific article published in 2020

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