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List of works by Jun'ichi Tsujii

A classification approach to coreference in discharge summaries: 2011 i2b2 challenge ⬇️

scientific article published on April 13, 2012

A re-evaluation of biomedical named entity-term relations ⬇️

scientific article published on 01 October 2010

AGRA: analysis of gene ranking algorithms.

scientific article

Accelerating the annotation of sparse named entities by dynamic sentence selection

scientific article

An analysis of gene/protein associations at PubMed scale ⬇️

scientific article published on October 6, 2011

Anatomical entity recognition with a hierarchical framework augmented by external resources

scientific article

Annotation and detection of drug effects in text for pharmacovigilance

Automatic extraction of angiogenesis bioprocess from text ⬇️

scientific article (publication date: October 2011)

Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.

scientific article published on 24 November 2006

Bidirectional inference with the easiest-first strategy for tagging sequence data

scholarly article published 2005

Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary

scientific article

Building Large Collections of Chinese and English Medical Terms from Semi-Structured and Encyclopedia Websites ⬇️

scientific article (publication date: 2013)

Building a high-quality sense inventory for improved abbreviation disambiguation

scientific article

Comparison between tagged corpora for the named entity task

Comparison between tagged corpora for the named entity task

Complex event extraction at PubMed scale

scientific article

Computational Linguistics and Natural Language Processing

Computing phrasal-signs in HPSG prior to parsing

Corpus annotation for mining biomedical events from literature

scientific article

Design and implementation of GXP make — A workflow system based on make

article published in 2013

Developing a Robust Part-of-Speech Tagger for Biomedical Text

article

Disambiguating the species of biomedical named entities using natural language parsers

scientific article

Discovering and visualizing indirect associations between biomedical concepts. ⬇️

scientific article

Evaluating contributions of natural language parsers to protein-protein interaction extraction

scientific article (publication date: February 2009)

Event extraction across multiple levels of biological organization ⬇️

scientific article published on September 15, 2012

Event extraction for DNA methylation ⬇️

scientific article published on October 6, 2011

Event extraction for systems biology by text mining the literature

scientific article

Event extraction with complex event classification using rich features

scientific article

Extracting Protein Interactions from Text with the Unified AkaneRE Event Extraction System ⬇️

scientific article published on July 1, 2010

Extracting the names of genes and gene products with a hidden Markov model

article

Extraction of gene-disease relations from Medline using domain dictionaries and machine learning.

scientific article

FACTA: a text search engine for finding associated biomedical concepts

scientific article

Feature Forest Models for Probabilistic HPSG Parsing

article

Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example.

scientific article published in January 2008

Generalising semantic category disambiguation with large lexical resources for fun and profit

scientific article

Improving clinical named entity recognition in Chinese using the graphical and phonetic feature

scientific article published on 23 December 2019

Improving the inter-corpora compatibility for protein annotations ⬇️

scientific article published on 01 October 2010

Improving the performance of dictionary-based approaches in protein name recognition.

scientific article

Investigating heterogeneous protein annotations toward cross-corpora utilization

scientific article

Learning string similarity measures for gene/protein name dictionary look-up using logistic regression

scientific article published on 12 August 2007

Maximum Entropy Models with Inequality Constraints: A Case Study on Text Categorization

article

Medie and Info-pubmed: 2010 update.

scientific article published on 6 October 2010

Mining metabolites: extracting the yeast metabolome from the literature

scientific article

New challenges for text mining: mapping between text and manually curated pathways

scientific article

Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.

scientific article published on 13 July 2015

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 ⬇️

scientific article published on June 26, 2012

PathText: a text mining integrator for biological pathway visualizations

scientific article

Probabilistic CFG with latent annotations

Probabilistic Chinese word segmentation with non-local information and stochastic training

article

Protein-protein interaction extraction by leveraging multiple kernels and parsers.

scientific article

Proximity-Based Frameworks for Generating Embeddings from Multi-Output Data ⬇️

scientific article published on November 1, 2012

Semantic retrieval for the accurate identification of relational concepts in massive textbases

scientific article (publication date: 2006)

Terminology-driven literature mining and knowledge acquisition in biomedicine.

scientific article published on December 2002

Text mining and its potential applications in systems biology

scientific article published on 12 October 2006

Text mining meets workflow: linking U-Compare with Taverna

scientific article

The GENIA project

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011 ⬇️

scientific article published on June 26, 2012

Themes in biomedical natural language processing: BioNLP08.

scientific article

U-Compare bio-event meta-service: compatible BioNLP event extraction services

scientific article (publication date: 18 December 2011)

U-Compare: share and compare text mining tools with UIMA

scientific article

Using workflows to explore and optimise named entity recognition for chemistry

scientific article

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