List of works by Michael Andrew Quail

A comprehensive characterization of myocardial and vascular phenotype in pediatric chronic kidney disease using cardiovascular magnetic resonance imaging.

scientific article

A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses

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A conditional piggyBac transposition system for genetic screening in mice identifies oncogenic networks in pancreatic cancer

scientific article published on 8 December 2014

A genome-scale vector resource enables high-throughput reverse genetic screening in a malaria parasite

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A genome-wide, end-sequenced 129Sv BAC library resource for targeting vector construction

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A large genome center's improvements to the Illumina sequencing system

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A method for selectively enriching microbial DNA from contaminating vertebrate host DNA.

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A novel linear plasmid mediates flagellar variation in Salmonella Typhi

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A scalable pipeline for highly effective genetic modification of a malaria parasite

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A simple method for directional transcriptome sequencing using Illumina technology

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A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus

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A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni

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A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

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A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin

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AHT-ChIP-seq: a completely automated robotic protocol for high-throughput chromatin immunoprecipitation

scientific article published on 7 November 2013

Abnormal Wave Reflections and Left Ventricular Hypertrophy Late After Coarctation of the Aorta Repair

scientific article published on 23 January 2017

Accuracy and reproducibility of right ventricular quantification in patients with pressure and volume overload using single-beat three-dimensional echocardiography

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Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

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An In-Solution Hybridisation Method for the Isolation of Pathogen DNA from Human DNA-rich Clinical Samples for Analysis by NGS

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An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm

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Analysis of ESTs from Lutzomyia longipalpis sand flies and their contribution toward understanding the insect-parasite relationship

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Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

scientific article (publication date: 19 July 2012)

Analysis of expressed sequence tags from the four main developmental stages of Trypanosoma congolense

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Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans

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Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species

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Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution

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Characterization of a novel wood mouse virus related to murid herpesvirus 4.

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Characterization of gene mutations and copy number changes in acute myeloid leukemia using a rapid target enrichment protocol

scientific article published on 7 November 2014

Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates

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Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry.

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Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux

scientific article published in April 2011

Clinical issues and outcomes in adults following repair of tetralogy of fallot

scientific article published on October 2013

Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain

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Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii

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Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

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Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways

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Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium

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Comparative genomic analysis of three Leishmania species that cause diverse human disease

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Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy

scientific article published in 2012

Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens

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Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans

scientific article published on 10 September 2009

Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology

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Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction

scientific article published on August 2006

Complete genome of acute rheumatic fever-associated serotype M5 Streptococcus pyogenes strain manfredo.

scientific article published on 29 September 2006

Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69.

scientific article published on 24 October 2008

Complete genome sequence and lytic phase transcription profile of a Coccolithovirus

scientific article

Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility

scientific article published on 28 March 2008

Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance

scientific article

Complete sequence and organization of pBtoxis, the toxin-coding plasmid of Bacillus thuringiensis subsp. israelensis

scientific article published on October 2002

Complex landscapes of somatic rearrangement in human breast cancer genomes

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Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7.

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Computer modeling to tailor therapy for congenital heart disease

scientific article published on September 2013

Copy number variation arising from gene conversion on the human Y chromosome

scientific article published on 5 December 2017

De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms

scientific article published on 21 June 2017

Description and nomenclature of Neisseria meningitidis capsule locus

scientific article published on April 2013

Determinants of right heart size and function in repaired Tetralogy of Fallot.

scientific article published on 16 January 2014

Development and validation of a comprehensive genomic diagnostic tool for myeloid malignancies

scientific article published on 27 April 2016

Development and validation of a novel method to derive central aortic systolic pressure from the MR aortic distension curve.

scientific article

Distribution of tetracycline and erythromycin resistance genes among human oral and fecal metagenomic DNA.

scientific article published in September 2009

Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients

scientific article published in 2011

Efficient depletion of host DNA contamination in malaria clinical sequencing

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Emergence of the Asian 1 genotype of dengue virus serotype 2 in viet nam: in vivo fitness advantage and lineage replacement in South-East Asia

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Erratum: CORRIGENDUM: Genome variation and evolution of the malaria parasite Plasmodium falciparum

scientific article published in March 2007

Erratum: Corrigendum: Genome variation and evolution of the malaria parasite Plasmodium falciparum

scientific article published in April 2007

Erratum: Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

scientific article published in Nature

Erratum: Corrigendum: The zebrafish reference genome sequence and its relationship to the human genome

scientific article published in Nature

Escherichia coli aconitases and oxidative stress: post-transcriptional regulation of sodA expression

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Evaluation and optimisation of preparative semi-automated electrophoresis systems for Illumina library preparation

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Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis

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Evolution of pathogenicity and sexual reproduction in eight Candida genomes

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Evolutionary dynamics of Clostridium difficile over short and long time scales

scientific article published on 20 April 2010

Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data

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Extent, causes, and consequences of small RNA expression variation in human adipose tissue

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G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

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Gene arrays at Pneumocystis carinii telomeres

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Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes

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Genetic basis of Y-linked hearing impairment

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Genetic mapping identifies novel highly protective antigens for an apicomplexan parasite

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Genome evolution of Wolbachia strain wPip from the Culex pipiens group

scientific article published on 12 June 2008

Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation

scientific article (publication date: March 2008)

Genome plasticity of BCG and impact on vaccine efficacy

scientific article

Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes

scientific article published on 22 May 2007

Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW).

scientific article published on 30 November 2009

Genome variation and evolution of the malaria parasite Plasmodium falciparum

scientific article published on 10 December 2006

Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression

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Genome-wide analysis reveals loci encoding anti-macrophage factors in the human pathogen Burkholderia pseudomallei K96243

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Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls

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Genome-wide end-sequenced BAC resources for the NOD/MrkTac() and NOD/ShiLtJ() mouse genomes

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Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

scientific article published on 06 January 2013

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

scientific article published on 11 May 2009

Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes

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Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens

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Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing

scientific article published on February 2012

Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei

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Genomic sequence of the class II region of the canine MHC: comparison with the MHC of other mammalian species

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Geometrical and stress analysis of factors associated with stent fracture after melody percutaneous pulmonary valve implantation

scientific article published on 5 August 2014

Global population structure and evolution of Bordetella pertussis and their relationship with vaccination

scientific article published on 22 April 2014

High-resolution single nucleotide polymorphism analysis distinguishes recrudescence and reinfection in recurrent invasive nontyphoidal Salmonella typhimurium disease

scientific article published on 7 February 2012

Human Y chromosome base-substitution mutation rate measured by direct sequencing in a deep-rooting pedigree

scientific article (publication date: 15 September 2009)

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

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Impact of pulmonary valve replacement in tetralogy of Fallot with pulmonary regurgitation: a comparison of intervention and nonintervention

scientific article published on 7 September 2012

Improved Protocols for Illumina Sequencing

Improved protocols for the illumina genome analyzer sequencing system

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Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06.

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Induction of the ferritin gene (ftnA) of Escherichia coli by Fe(2+)-Fur is mediated by reversal of H-NS silencing and is RyhB independent

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Initial sequencing and comparative analysis of the mouse genome

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Insight into the genome of Aspergillus fumigatus: analysis of a 922 kb region encompassing the nitrate assimilation gene cluster

scientific article published on April 2004

Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis

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Insights into hominid evolution from the gorilla genome sequence

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Insights into the Effects on Metal Binding of the Systematic Substitution of Five Key Glutamate Ligands in the Ferritin of Escherichia coli

scientific article published on May 2, 2003

Insights into the genome sequence of a free-living Kinetoplastid: Bodo saltans (Kinetoplastida: Euglenozoa)

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Ketoconazole-mediated growth inhibition in Botrytis cinerea and Saccharomyces cerevisiae

article published in 1993

Leukemia-associated somatic mutations drive distinct patterns of age-related clonal hemopoiesis

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Lineage-specific virulence determinants of Haemophilus influenzae biogroup aegyptius

scientific article published in March 2012

Massive genomic rearrangement acquired in a single catastrophic event during cancer development

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Massively parallel sequencing reveals the complex structure of an irradiated human chromosome on a mouse background in the Tc1 model of Down syndrome

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Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18.

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Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

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Multidrug-resistant Salmonella enterica serovar paratyphi A harbors IncHI1 plasmids similar to those found in serovar typhi.

scientific article published on 23 March 2007

Noninvasive pulmonary artery wave intensity analysis in pulmonary hypertension

scientific article published on 6 February 2015

Novel magnetic resonance wave intensity analysis in pulmonary hypertension.

scientific article published on 16 January 2014

Optimal enzymes for amplifying sequencing libraries

scientific article published on 28 December 2011

PET-CMR in heart failure - synergistic or redundant imaging?

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Patterns of evolution in the unique tRNA gene arrays of the genus Entamoeba

scientific article published on November 2007

Phylogenetic relationships of the Wolbachia of nematodes and arthropods

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Plasmodium falciparum variant surface antigen expression patterns during malaria

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Population genomics of domestic and wild yeasts

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Prognostic and functional implications of left atrial late gadolinium enhancement cardiovascular magnetic resonance

Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi

scientific article published on 21 January 2009

Quantitation of next generation sequencing library preparation protocol efficiencies using droplet digital PCR assays - a systematic comparison of DNA library preparation kits for Illumina sequencing

scientific article

Quantitative insertion-site sequencing (QIseq) for high throughput phenotyping of transposon mutants

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Question 2. Is Doppler ultrasound superior to upper gastrointestinal contrast study for the diagnosis of malrotation?

scientific article published on March 2011

Question 3 Does a higher initial dose of adenosine improve cardioversion rates in supraventricular tachycardia?

scientific article published on February 2012

Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology

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Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis

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Read and assembly metrics inconsequential for clinical utility of whole-genome sequencing in mapping outbreaks

scientific article published in July 2013

Real time magnetic resonance assessment of septal curvature accurately tracks acute hemodynamic changes in pediatric pulmonary hypertension

scientific article published on 16 January 2014

Real-time magnetic resonance assessment of septal curvature accurately tracks acute hemodynamic changes in pediatric pulmonary hypertension.

scientific article published on 25 April 2014

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes.

scientific article published on 21 March 2018

Reply to: "Letter to the editor: Comparing pace and speed in the pulmonary circulation?".

scientific article published in April 2016

Revealing the genetic structure of a trait by sequencing a population under selection

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Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data

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Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81

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SASI-Seq: sample assurance Spike-Ins, and highly differentiating 384 barcoding for Illumina sequencing

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Separation, digestion, and cloning of intact parasite chromosomes embedded in agarose

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Sequence and analysis of chromosome 2 of Dictyostelium discoideum

scientific article published in Nature

Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet

scientific article published on 05 July 2007

Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization

scientific article

Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei

scientific article (publication date: 22 February 2003)

Serial Assessment of Coronary Flow Reserve by Rubidium-82 Positron Emission Tomography Predicts Mortality in Heart Transplant Recipients

scientific article published on 17 October 2018

Seronegative autoimmune hepatitis presenting after diagnosis of coeliac disease: a case report

scientific article published in May 2009

Single-cell paired-end genome sequencing reveals structural variation per cell cycle

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Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae

scientific article published on 13 January 2012

TLE1 modifies the effects of NOD2 in the pathogenesis of Crohn's disease

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Telomeric expression sites are highly conserved in Trypanosoma brucei

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The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation

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The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli

scientific article published on 6 November 2009

The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism

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The Mycoplasma conjunctivae genome sequencing, annotation and analysis

scientific article published on 16 June 2009

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries

scientific article published on 21 January 2016

The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081.

scientific article

The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants

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The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients

scientific article published on 17 October 2008

The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex

scientific article published on 28 February 2012

The genome of Rhizobium leguminosarum has recognizable core and accessory components

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The genome of a pathogenic rhodococcus: cooptive virulence underpinned by key gene acquisitions

scientific article (publication date: 30 September 2010)

The genome of the blood fluke Schistosoma mansoni

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The genome of the kinetoplastid parasite, Leishmania major

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The genome of the protist parasite Entamoeba histolytica

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The genome sequence of Trypanosoma brucei gambiense, causative agent of chronic human african trypanosomiasis

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The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay

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The genomic basis of parasitism in the Strongyloides clade of nematodes

scientific article published in February 2016

The industrial melanism mutation in British peppered moths is a transposable element

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The infectious BAC genomic DNA expression library: a high capacity vector system for functional genomics

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The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

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The pCoo plasmid of enterotoxigenic Escherichia coli is a mosaic cointegrate

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Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis

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Use of cardiovascular magnetic resonance imaging for TAVR assessment in patients with bioprosthetic aortic valves: comparison with computed tomography.

scientific article published on 11 August 2012

Valvular disease. Super size me? Annular size and paravalvular leak after TAVR.

scientific article published on 20 March 2012

Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study.

scientific article published on 14 November 2012

Zero tolerance for healthcare-associated MRSA bacteraemia: is it realistic?

scientific article