List of works - Joël Vandekerckhove

A la carte proteomics with an emphasis on gel-free techniques

scientific article published on August 2007

A llama-derived gelsolin single-domain antibody blocks gelsolin-G-actin interaction

scientific article

A method for rapidly screening functionality of actin mutants and tagged actins

scientific article

A new role for nuclear transport factor 2 and Ran: nuclear import of CapG

scientific article

A review of COFRADIC techniques targeting protein N-terminal acetylation

scientific article

Actin interacts with CCT via discrete binding sites: a binding transition-release model for CCT-mediated actin folding

scientific article

Applications of diagonal chromatography for proteome-wide characterization of protein modifications and activity-based analyses.

scientific article

Caspase-14 protects against epidermal UVB photodamage and water loss

scientific article

Cell_motility: a cross-platform, open source application for the study of cell motion paths

scientific article published on 8 June 2006

Cells lacking β-actin are genetically reprogrammed and maintain conditional migratory capacity

scientific article

Characterization of a secreted Chlamydia protease

scientific article

Combining quantitative proteomics data processing workflows for greater sensitivity

scientific article

Comparative proteome analysis of Chlamydia trachomatis serovar A, D and L2.

scientific article

Diagonal reverse-phase chromatography applications in peptide-centric proteomics: ahead of catalogue-omics?

scientific article

Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories

scientific article

Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides

scientific article

Four stage liquid chromatographic selection of methionyl peptides for peptide-centric proteome analysis: the proteome of human multipotent adult progenitor cells

scientific article

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

scientific article

Global phosphoproteome analysis on human HepG2 hepatocytes using reversed-phase diagonal LC

scientific article

Human Proteinpedia enables sharing of human protein data

scientific article

HyperISGylation of Old World monkey ISG15 in human cells

scientific article

Identification and expression analysis of splice variants of mouse enabled homologue during development and in adult tissues

scientific article

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster

scientific article

Identification of the PXW sequence as a structural gatekeeper of the headpiece C-terminal subdomain fold

scientific article (publication date: 23 June 2006)

Implementation and application of a versatile clustering tool for tandem mass spectrometry data

scientific article

Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering

scientific article

In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography

scientific article

Increased importin-beta-dependent nuclear import of the actin modulating protein CapG promotes cell invasion

scientific article

Involvement of sialoadhesin in entry of porcine reproductive and respiratory syndrome virus into porcine alveolar macrophages

scientific article

L-plastin nanobodies perturb matrix degradation, podosome formation, stability and lifetime in THP-1 macrophages

scientific article

Listeria comet tails: the actin-based motility machinery at work

scientific article

Mammalian protein-protein interaction trap (MAPPIT) analysis of STAT5, CIS, and SOCS2 interactions with the growth hormone receptor

scientific journal article

MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results

scientific article published in February 2007

Mass spectrometry-driven proteomics: an introduction

scientific article

Morphological and biochemical characterization of a human liver in a uPA-SCID mouse chimera

scientific article

NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation

scientific article

Nuclear actin-binding proteins as modulators of gene transcription

scientific article

PRIDE: the proteomics identifications database

scientific article

Peptizer, a tool for assessing false positive peptide identifications and manually validating selected results

scientific article

Phenotypes induced by NM causing alpha-skeletal muscle actin mutants in fibroblasts, Sol 8 myoblasts and myotubes

scientific article

Phosphorylation by protein kinase CK2 modulates the activity of the ATP binding cassette A1 transporter

scientific article published on 24 June 2004

Protein processing and other modifications analyzed by diagonal peptide chromatography

scientific article published on 14 September 2006

Proteome analysis of human mesothelial cells during epithelial to mesenchymal transitions induced by shed menstrual effluent

scientific article

Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of N(alpha)-acetyltransferases and point to hNaa10p as the post-translational actin N(alpha)-acetyltransferase

scientific article

Proteome-wide Identification of HtrA2/Omi Substrates

scientific article

Proteome-wide substrate analysis indicates substrate exclusion as a mechanism to generate caspase-7 versus caspase-3 specificity

scientific journal article

Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans

scholarly article

Proteomics of Medicago truncatula seed development establishes the time frame of diverse metabolic processes related to reserve accumulation

scientific article

Redox proteomics of protein-bound methionine oxidation

scientific article

Rover: a tool to visualize and validate quantitative proteomics data from different sources

scientific article

Stable isotopic labeling in proteomics

scientific article published on December 2008

Stratifying fascin and cortactin function in invadopodium formation using inhibitory nanobodies and targeted subcellular delocalization

scientific article published on 10 January 2014

Structure of granzyme C reveals an unusual mechanism of protease autoinhibition

scientific article

TAZ interacts with zonula occludens‐1 and ‐2 proteins in a PDZ‐1 dependent manner ⬇️

scientific article published on September 18, 2010

Targeted peptidecentric proteomics reveals caspase-7 as a substrate of the caspase-1 inflammasomes

scientific article published on 30 July 2008

The F-actin filament capping protein CapG is a bona fide nucleolar protein

scientific article

The Nucleo-cytoplasmic actin-binding protein CapG lacks a nuclear export sequence present in structurally related proteins

scientific article (publication date: 16 May 2003)

The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events

scientific article (publication date: 2013)

The actin-capping protein CapG localizes to microtubule-dependent organelles during the cell cycle

scientific article

The chaperone-like protein HYPK acts together with NatA in cotranslational N-terminal acetylation and prevention of Huntingtin aggregation

scientific article

The expression, processing and localization of polymorphic membrane proteins in Chlamydia pneumoniae strain CWL029

scientific article

The human platelet proteome mapped by peptide-centric proteomics: a functional protein profile

scientific article published in August 2005

The ins and outs of leptin receptor activation

scientific article

The mouse thymosin beta15 gene family displays unique complexity and encodes a functional thymosin repeat

scientific journal article

The proteome of the human neuroblastoma cell line SH-SY5Y: an enlarged proteome

scientific article

Tryptophan fluorescence study of the interaction of penetratin peptides with model membranes

scientific article

Tumor necrosis factor-induced modulation of glyoxalase I activities through phosphorylation by PKA results in cell death and is accompanied by the formation of a specific methylglyoxal-derived AGE

scientific article

Unbalancing the phosphatidylinositol-4,5-bisphosphate-cofilin interaction impairs cell steering

scientific article

alpha-Skeletal muscle actin nemaline myopathy mutants cause cell death in cultured muscle cells

scientific article

List of works by Joël Vandekerckhove

A la carte proteomics with an emphasis on gel-free techniques

A llama-derived gelsolin single-domain antibody blocks gelsolin-G-actin interaction

A method for rapidly screening functionality of actin mutants and tagged actins

A new role for nuclear transport factor 2 and Ran: nuclear import of CapG

A review of COFRADIC techniques targeting protein N-terminal acetylation

Actin interacts with CCT via discrete binding sites: a binding transition-release model for CCT-mediated actin folding

Applications of diagonal chromatography for proteome-wide characterization of protein modifications and activity-based analyses.

Caspase-14 protects against epidermal UVB photodamage and water loss

Cell_motility: a cross-platform, open source application for the study of cell motion paths

Cells lacking β-actin are genetically reprogrammed and maintain conditional migratory capacity

Characterization of a secreted Chlamydia protease

Combining quantitative proteomics data processing workflows for greater sensitivity

Comparative proteome analysis of Chlamydia trachomatis serovar A, D and L2.

Diagonal reverse-phase chromatography applications in peptide-centric proteomics: ahead of catalogue-omics?

Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories

Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides

Four stage liquid chromatographic selection of methionyl peptides for peptide-centric proteome analysis: the proteome of human multipotent adult progenitor cells

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

Global phosphoproteome analysis on human HepG2 hepatocytes using reversed-phase diagonal LC

Human Proteinpedia enables sharing of human protein data

HyperISGylation of Old World monkey ISG15 in human cells

Identification and expression analysis of splice variants of mouse enabled homologue during development and in adult tissues

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster

Identification of the PXW sequence as a structural gatekeeper of the headpiece C-terminal subdomain fold

Implementation and application of a versatile clustering tool for tandem mass spectrometry data

Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering

In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography

Increased importin-beta-dependent nuclear import of the actin modulating protein CapG promotes cell invasion

Involvement of sialoadhesin in entry of porcine reproductive and respiratory syndrome virus into porcine alveolar macrophages

L-plastin nanobodies perturb matrix degradation, podosome formation, stability and lifetime in THP-1 macrophages

Listeria comet tails: the actin-based motility machinery at work

Mammalian protein-protein interaction trap (MAPPIT) analysis of STAT5, CIS, and SOCS2 interactions with the growth hormone receptor

MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results

Mass spectrometry-driven proteomics: an introduction

Morphological and biochemical characterization of a human liver in a uPA-SCID mouse chimera

NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation

Nuclear actin-binding proteins as modulators of gene transcription

PRIDE: the proteomics identifications database

Peptizer, a tool for assessing false positive peptide identifications and manually validating selected results

Phenotypes induced by NM causing alpha-skeletal muscle actin mutants in fibroblasts, Sol 8 myoblasts and myotubes

Phosphorylation by protein kinase CK2 modulates the activity of the ATP binding cassette A1 transporter

Protein processing and other modifications analyzed by diagonal peptide chromatography

Proteome analysis of human mesothelial cells during epithelial to mesenchymal transitions induced by shed menstrual effluent

Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of N(alpha)-acetyltransferases and point to hNaa10p as the post-translational actin N(alpha)-acetyltransferase

Proteome-wide Identification of HtrA2/Omi Substrates

Proteome-wide substrate analysis indicates substrate exclusion as a mechanism to generate caspase-7 versus caspase-3 specificity

Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans

Proteomics of Medicago truncatula seed development establishes the time frame of diverse metabolic processes related to reserve accumulation

Redox proteomics of protein-bound methionine oxidation

Rover: a tool to visualize and validate quantitative proteomics data from different sources

Stable isotopic labeling in proteomics

Stratifying fascin and cortactin function in invadopodium formation using inhibitory nanobodies and targeted subcellular delocalization

Structure of granzyme C reveals an unusual mechanism of protease autoinhibition

TAZ interacts with zonula occludens‐1 and ‐2 proteins in a PDZ‐1 dependent manner ⬇️

Targeted peptidecentric proteomics reveals caspase-7 as a substrate of the caspase-1 inflammasomes

The F-actin filament capping protein CapG is a bona fide nucleolar protein

The Nucleo-cytoplasmic actin-binding protein CapG lacks a nuclear export sequence present in structurally related proteins

The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events

The actin-capping protein CapG localizes to microtubule-dependent organelles during the cell cycle

The chaperone-like protein HYPK acts together with NatA in cotranslational N-terminal acetylation and prevention of Huntingtin aggregation

The expression, processing and localization of polymorphic membrane proteins in Chlamydia pneumoniae strain CWL029

The human platelet proteome mapped by peptide-centric proteomics: a functional protein profile

The ins and outs of leptin receptor activation

The mouse thymosin beta15 gene family displays unique complexity and encodes a functional thymosin repeat

The proteome of the human neuroblastoma cell line SH-SY5Y: an enlarged proteome

Tryptophan fluorescence study of the interaction of penetratin peptides with model membranes

Tumor necrosis factor-induced modulation of glyoxalase I activities through phosphorylation by PKA results in cell death and is accompanied by the formation of a specific methylglyoxal-derived AGE

Unbalancing the phosphatidylinositol-4,5-bisphosphate-cofilin interaction impairs cell steering

alpha-Skeletal muscle actin nemaline myopathy mutants cause cell death in cultured muscle cells