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List of works by Katharina Riedel

A Core Genome Multilocus Sequence Typing Scheme for Enterococcus faecalis

scientific article published on 27 February 2019

A bacterial-fungal metaproteomic analysis enlightens an intriguing multicomponent interaction in the rhizosphere of Lactuca sativa.

scientific article published on 13 March 2012

A gel-free quantitative proteomics approach to investigate temperature adaptation of the food-borne pathogen Cronobacter turicensis 3032

scientific article published on 01 September 2010

A marine Mesorhizobium sp. produces structurally novel long-chain N-acyl-L-homoserine lactones.

scientific article published on 30 March 2007

A metaproteomics approach to elucidate host and pathogen protein expression during catheter-associated urinary tract infections (CAUTIs).

scientific article

A proteomic analysis of ferulic acid metabolism in Amycolatopsis sp. ATCC 39116

scientific article published on 16 May 2018

A proteomics approach to study synergistic and antagonistic interactions of the fungal-bacterial consortium Fusarium oxysporum wild-type MSA 35.

scientific article

Active-site mutations which change the substrate specificity of the Clostridium stercorarium cellulase CelZ implications for synergism.

scientific article

An alternative method for serum protein depletion/enrichment by precipitation at mildly acidic pH values and low ionic strength.

scientific article published on 13 March 2015

An inhibitor of bacterial quorum sensing reduces mortalities caused by Vibriosis in rainbow trout (Oncorhynchus mykiss, Walbaum).

scientific article

An optimized metaproteomics protocol for a holistic taxonomic and functional characterization of microbial communities from marine particles

scientific article published on 12 April 2020

Analysis of the quorum-sensing regulon of the opportunistic pathogen Burkholderia cepacia H111 by proteomics

scientific article published on 01 February 2003

Antibacterial metabolites and bacteriolytic enzymes produced by Bacillus pumilus during bacteriolysis of Arthrobacter citreus

scientific article published on 13 February 2015

Attenuation of Pseudomonas aeruginosa virulence by quorum sensing inhibitors

scientific article (publication date: August 2003)

Aureolib - a proteome signature library: towards an understanding of staphylococcus aureus pathophysiology.

scientific article

Bacillus pumilus KatX2 confers enhanced hydrogen peroxide resistance to a Bacillus subtilis PkatA::katX2 mutant strain.

scientific article published on 26 April 2017

Biofilm formation of Pseudomonas putida IsoF: the role of quorum sensing as assessed by proteomics

scientific article published on 01 March 2005

Bioinformatic analysis of fold-type III PLP-dependent enzymes discovers multimeric racemases

scientific article published on 27 October 2016

Biotransformation and reduction of estrogenicity of bisphenol A by the biphenyl-degrading Cupriavidus basilensis

scientific article published on 3 January 2017

Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems

scientific article published on 29 April 2016

Cellulose as an extracellular matrix component present in Enterobacter sakazakii biofilms.

scientific article

Comparative proteome analysis in an Escherichia coli CyDisCo strain identifies stress responses related to protein production, oxidative stress and accumulation of misfolded protein

article

Comprehensive Redox Profiling of the Thiol Proteome of Clostridium difficile.

scientific article published in March 2018

Construction of self-transmissible green fluorescent protein-based biosensor plasmids and their use for identification of N-acyl homoserine-producing bacteria in lake sediments.

scientific article

Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis

scientific article

Data visualization in environmental proteomics

scientific article

Deciphering functional diversification within the lichen microbiota by meta-omics

scientific article

Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199

scientific article

Deletion of membrane-associated Asp23 leads to upregulation of cell wall stress genes in Staphylococcus aureus

article

Detection of quorum-sensing-related molecules in Vibrio scophthalmi.

scientific article

Different protein expression profiles in cheese and clinical isolates of Enterococcus faecalis revealed by proteomic analysis.

scientific article

Differential View on the Bile Acid Stress Response of

scientific article published on 18 February 2019

Editorial: Bioactive Compounds from Microbes.

scientific article published on 8 March 2017

Effects of adult temperature on gene expression in a butterfly: identifying pathways associated with thermal acclimation

article

Effects of resource chemistry on the composition and function of stream hyporheic biofilms.

scientific article published on 14 February 2012

Environmental proteomics: analysis of structure and function of microbial communities.

scientific article published on February 2010

Evidence for a plant-associated natural habitat for Cronobacter spp.

scientific article published on 11 September 2009

Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics

scientific article

Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C

scientific article

Genes involved in Cronobacter sakazakii biofilm formation.

scientific article

Genome and Proteome Analysis of Rhodococcus erythropolis MI2: Elucidation of the 4,4´-Dithiodibutyric Acid Catabolism.

scientific article

Global analysis of the impact of linezolid onto virulence factor production in S. aureus USA300.

scientific article published on 17 February 2016

Highly precise quantification of protein molecules per cell during stress and starvation responses in Bacillus subtilis

scientific article published on 30 May 2014

Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation

article

Identification of AHL- and BDSF-Controlled Proteins in Burkholderia cenocepacia by Proteomics.

scientific article published in January 2018

Identification of a novel virulence factor in Burkholderia cenocepacia H111 required for efficient slow killing of Caenorhabditis elegans.

scientific article published on December 2004

Identification of functions linking quorum sensing with biofilm formation in Burkholderia cenocepacia H111 ⬇️

scientific article published on June 1, 2012

Identification of proteins associated with the Pseudomonas aeruginosa biofilm extracellular matrix

scientific article published on 26 September 2012

Identification of proteins involved in osmotic stress response in Enterobacter sakazakii by proteomics.

scientific article

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome

scientific article published on 17 October 2017

Influenza A H1N1 Induced Disturbance of the Respiratory and Fecal Microbiome of German Landrace Pigs - a Multi-Omics Characterization

scientific article published on 06 October 2021

Inhibition of quorum sensing in Pseudomonas aeruginosa biofilm bacteria by a halogenated furanone compound.

scientific article published in January 2002

Insights into the Gene Expression Profile of Uncultivable Hemotrophic Mycoplasma suis during Acute Infection, Obtained Using Proteome Analysis ⬇️

scientific article published on January 20, 2012

Intramolecular synergism in an engineered exo‐endo‐1,4‐β‐glucanase fusion protein ⬇️

scientific article published on May 1, 1998

Iron Regulation in

scientific article published on 24 December 2018

Lack of AHL-based quorum sensing in Pseudomonas fluorescens isolated from milk

scientific article published on 9 October 2014

Life Stage-specific Proteomes of Legionella pneumophila Reveal a Highly Differential Abundance of Virulence-associated Dot/Icm effectors

scientific article

Marine particle microbiomes during a spring diatom bloom contain active sulfate-reducing bacteria

scientific article published in 2024

Maturation of the cytochrome cd1 nitrite reductase NirS from Pseudomonas aeruginosa requires transient interactions between the three proteins NirS, NirN and NirF ⬇️

scientific article published on June 27, 2013

Metaproteomics to unravel major microbial players in leaf litter and soil environments: challenges and perspectives.

scientific article published on October 2013

Milk-deteriorating exoenzymes from Pseudomonas fluorescens 041 isolated from refrigerated raw milk

scientific article published on 31 March 2015

Mining quorum sensing regulated proteins - Role of bacterial cell-to-cell communication in global gene regulation as assessed by proteomics.

scientific article published on 05 May 2011

Modulation of Protein S-Nitrosylation by Isoprene Emission in Poplar

scientific article published on 5 February 2016

Molecular characterization of the alpha-glucosidase activity in Enterobacter sakazakii reveals the presence of a putative gene cluster for palatinose metabolism.

scientific article published on 24 March 2006

Molecular mechanisms underlying the close association between soil Burkholderia and fungi

scientific article

Multi-Organism Proteomes (iMOP): Advancing our Understanding of Human Biology.

scientific article published in September 2015

Multiple roles of Pseudomonas aeruginosa TBCF10839 PilY1 in motility, transport and infection.

scientific article

N-acylhomoserine-lactone-mediated communication between Pseudomonas aeruginosa and Burkholderia cepacia in mixed biofilms.

scientific article published in December 2001

Nonthermal Plasma Jet Treatment Negatively Affects the Viability and Structure of Candida albicans SC5314 Biofilms

scientific article published on 17 October 2018

Oligo(cis-1,4-isoprene) aldehyde-oxidizing dehydrogenases of the rubber-degrading bacterium Gordonia polyisoprenivorans VH2.

scientific article published on 27 September 2017

Production of N-acyl-L-homoserine lactones by P. aeruginosa isolates from chronic lung infections associated with cystic fibrosis

scientific article published on 01 March 2000

Properties and gene structure of a bifunctional cellulolytic enzyme (CelA) from the extreme thermophile 'Anaerocellum thermophilum' with separate glycosyl hydrolase family 9 and 48 catalytic domains.

scientific article

Protein oxidation and aggregation in UVA-irradiated Escherichia coli cells as signs of accelerated cellular senescence

scientific article published on 01 November 2010

Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus

scientific article published on 12 January 2019

Proteome analysis of fungal and bacterial involvement in leaf litter decomposition.

scientific article published in May 2010

Proteome analysis of intraclonal diversity of two Pseudomonas aeruginosa TB clone isolates.

scientific article

Proteome and carbon flux analysis of Pseudomonas aeruginosa clinical isolates from different infection sites

scientific article published on 09 March 2016

Proteomic Signatures of Stressed with Metronidazole, Vancomycin, or Fidaxomicin

scientific article published on 15 November 2018

Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T

scientific article

Proteomic profiling of Cronobacter turicensis 3032, a food-borne opportunistic pathogen.

scientific article

Quantitative detection of changes in the leaf-mesophyll tonoplast proteome in dependency of a cadmium exposure of barley (Hordeum vulgare L.) plants.

scientific article

Quorum Sensing and Spoilage Potential of Psychrotrophic Enterobacteriaceae Isolated from Milk

scientific article published on 22 October 2018

Quorum-sensing effects in the antagonistic rhizosphere bacterium Serratia plymuthica HRO-C48.

scientific article published in March 2009

Quorum-sensing-directed protein expression in Serratia proteamaculans B5a.

scientific article published in February 2003

Reducing the genetic code induces massive rearrangement of the proteome.

scientific article

Sample Preparation for Metaproteome Analyses of Soil and Leaf Litter

scientific article published on 01 January 2018

Secondary metabolites of Flustra foliacea and their influence on bacteria.

scientific article

Session 2: Biofilms/Implant associated infections

scientific article published on 01 February 2019

Soil metaproteomics - Comparative evaluation of protein extraction protocols.

scientific article

Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics.

scientific article

Structure of the Clostridium stercorarium gene celY encoding the exo-1,4-beta-glucanase Avicelase II.

scientific article published in March 1997

Symbiotic Interplay of Fungi, Algae, and Bacteria within the Lung Lichen Lobaria pulmonaria L. Hoffm. as Assessed by State-of-the-Art Metaproteomics.

scientific article published on 14 March 2017

Synergistic contribution of the Legionella pneumophila lqs genes to pathogen-host interactions

scientific article

Ten years of subproteome investigations in lactic acid bacteria: A key for food starter and probiotic typing

scientific article published on 06 May 2015

The catabolism of 3,3'-thiodipropionic acid in Variovorax paradoxus strain TBEA6: A proteomic analysis

scientific article published on 11 February 2019

The hidden lipoproteome of Staphylococcus aureus

scientific article published in February 2018

The modular cellulase CelZ of the thermophilic bacteriumClostridium stercorariumcontains a thermostabilizing domain ⬇️

scientific article published on July 15, 1998

The protein inventory of Clostridium difficile grown in complex and minimal medium.

scientific article published on 11 August 2016

Time-Resolved Analysis of Cytosolic and Surface-Associated Proteins of Staphylococcus aureus HG001 under Planktonic and Biofilm Conditions.

scientific article published on 7 July 2015

Towards the proteome of Burkholderia cenocepacia H111: setting up a 2-DE reference map.

scientific article published in January 2006

Two GacA-dependent small RNAs modulate the quorum-sensing response in Pseudomonas aeruginosa

scientific article

Updating the proteome of the uncultivable hemotrophic Mycoplasma suis in experimentally infected pigs

scientific article published on 17 December 2015

Virulence Factors Produced by Staphylococcus aureus Biofilms Have a Moonlighting Function Contributing to Biofilm Integrity

scientific article published on 08 March 2019

Visualization of N-acylhomoserine lactone-mediated cell-cell communication between bacteria colonizing the tomato rhizosphere.

scientific article

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions ⬇️

scientific article published on March 8, 2012

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