List of works - Martin Frank

A Structure-Guided Mutation in the Major Capsid Protein Retargets BK Polyomavirus

scientific article

An Unusual Carbohydrate Conformation is Evident in Moraxella catarrhalis Oligosaccharides.

scientific article published on 5 August 2015

Analysis of protein-carbohydrate interaction at the lower size limit of the protein part (15-mer peptide) by NMR spectroscopy, electrospray ionization mass spectrometry, and molecular modeling

scientific article published in July 2002

Binding energy calculations for hevein-carbohydrate interactions using expanded ensemble molecular dynamics simulations.

scientific article

Bioinformatics and molecular modeling in glycobiology.

scientific article

Bioinformatics for glycomics: status, methods, requirements and perspectives.

scientific article published in June 2004

Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB

scientific article

Carbohydrate chain of ganglioside GM1 as a ligand: identification of the binding strategies of three 15 mer peptides and their divergence from the binding modes of growth-regulatory galectin-1 and cholera toxin

scientific article published in December 2005

Comparative (1)H NMR and molecular modeling study of hydroxy protons of beta-D-Galp-(1-->4)-beta-D-GlcpNAc-(1-->2)-alpha-D-Manp-(1-->O)(CH(2))(7)CH(3) analogues in aqueous solution

scientific article published on 17 August 2006

Complement Factor H and Simian Virus 40 bind the GM1 ganglioside in distinct conformations

scientific article

Computation of binding energies including their enthalpy and entropy components for protein-ligand complexes using support vector machines.

scientific article

Conformational analysis of the neutral exopolysaccharide produced by Lactobacillus delbrueckii ssp. bulgaricus LBB.B26.

scientific article

Design, Synthesis, and Biological Evaluation of Small, High-Affinity Siglec-7 Ligands: Toward Novel Inhibitors of Cancer Immune Evasion.

scientific article published on 19 January 2017

Determination of modulation of ligand properties of synthetic complex-type biantennary N-glycans by introduction of bisecting GlcNAc in silico, in vitro and in vivo.

scientific article

Dynamic Interactions of Fully Glycosylated SARS-CoV-2 Spike Protein with Various Antibodies

scientific article published on 16 September 2021

Dynamic aspects of antibody:oligosaccharide complexes characterized by molecular dynamics simulations and saturation transfer difference nuclear magnetic resonance.

scientific article

Evaluation of riproximin binding properties reveals a novel mechanism for cellular targeting

scientific article

GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research.

scientific article

GlycomeDB--a unified database for carbohydrate structures

scientific article

Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)

article

Heparin interactions with apoA1 and SAA in inflammation-associated HDL.

scientific article published on 20 April 2016

Histo-Blood Group Antigen Presentation Is Critical for Binding of Norovirus VLP to Glycosphingolipids in Model Membranes

scientific article

Identification and characterization of riproximin, a new type II ribosome-inactivating protein with antineoplastic activity from Ximenia americana.

scientific article published on 26 April 2006

Identification of a capsular polysaccharide from Moraxella bovis

scientific article published on 01 March 2005

Identification of inhibitors of Tartrate-resistant acid phosphatase (TRAP/ACP5) activity by small-molecule screening.

scientific article published on 3 March 2018

Immunoglobulin G1 Fc Domain Motions: Implications for Fc Engineering

scientific article

Influence of human serum albumin on longitudinal and transverse relaxation rates (r1 and r2) of magnetic resonance contrast agents.

scientific article published in March 2006

Lectin ligands: new insights into their conformations and their dynamic behavior and the discovery of conformer selection by lectins

scientific article published on 01 January 1998

Lewis histo-blood group α1,3/α1,4 fucose residues may both mediate binding to GII.4 noroviruses.

scientific article published on 15 May 2012

Molecular dynamics simulations of glycoclusters and glycodendrimers.

scientific article

Molecular interaction of artemisinin with translationally controlled tumor protein (TCTP) of Plasmodium falciparum

scientific article

Mouse Siglec-1 Mediates trans-Infection of Surface-bound Murine Leukemia Virus in a Sialic Acid N-Acyl Side Chain-dependent Manner

scientific article

Polysialic acid is a cellular receptor for human adenovirus 52.

scientific article published on 19 April 2018

Proteomics-based screening of the endothelial heparan sulfate interactome reveals that C-type lectin 14a (CLEC14A) is a heparin-binding protein

scientific article published on 21 January 2020

Rapid generation of a representative ensemble of N-glycan conformations

scientific article published on 01 January 2002

Symbol Nomenclature for Graphical Representations of Glycans

scientific article

Synthesis and biological evaluation of 9-N-oxamyl sialosides as Siglec-7 ligands

scientific article published on 07 July 2015

The Structure of an Infectious Human Polyomavirus and Its Interactions with Cellular Receptors ⬇️

scientific article published on 21 April 2018

The fungal ligand chitin directly binds TLR2 and triggers inflammation dependent on oligomer size

scientific article published on 18 October 2018

The small chemical enzyme inhibitor 5-phenylnicotinic acid/CD13 inhibits cell migration and invasion of tartrate-resistant acid phosphatase/ACP5-overexpressing MDA-MB-231 breast cancer cells.

scientific article

The structural basis of the difference in sensitivity for PNGase F in the de-N-glycosylation of the native bovine pancreatic ribonucleases B and BS.

scientific article

Uncovering Nonconventional and Conventional Hydrogen Bonds in Oligosaccharides through NMR Experiments and Molecular Modeling: Application to Sialyl Lewis-X.

scientific article

Viral O-GalNAc peptide epitopes: a novel potential target in viral envelope glycoproteins.

scientific article

List of works by Martin Frank

A Structure-Guided Mutation in the Major Capsid Protein Retargets BK Polyomavirus

An Unusual Carbohydrate Conformation is Evident in Moraxella catarrhalis Oligosaccharides.

Analysis of protein-carbohydrate interaction at the lower size limit of the protein part (15-mer peptide) by NMR spectroscopy, electrospray ionization mass spectrometry, and molecular modeling

Binding energy calculations for hevein-carbohydrate interactions using expanded ensemble molecular dynamics simulations.

Bioinformatics and molecular modeling in glycobiology.

Bioinformatics for glycomics: status, methods, requirements and perspectives.

Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB

Carbohydrate chain of ganglioside GM1 as a ligand: identification of the binding strategies of three 15 mer peptides and their divergence from the binding modes of growth-regulatory galectin-1 and cholera toxin

Comparative (1)H NMR and molecular modeling study of hydroxy protons of beta-D-Galp-(1-->4)-beta-D-GlcpNAc-(1-->2)-alpha-D-Manp-(1-->O)(CH(2))(7)CH(3) analogues in aqueous solution

Complement Factor H and Simian Virus 40 bind the GM1 ganglioside in distinct conformations

Computation of binding energies including their enthalpy and entropy components for protein-ligand complexes using support vector machines.

Conformational analysis of the neutral exopolysaccharide produced by Lactobacillus delbrueckii ssp. bulgaricus LBB.B26.

Design, Synthesis, and Biological Evaluation of Small, High-Affinity Siglec-7 Ligands: Toward Novel Inhibitors of Cancer Immune Evasion.

Determination of modulation of ligand properties of synthetic complex-type biantennary N-glycans by introduction of bisecting GlcNAc in silico, in vitro and in vivo.

Dynamic Interactions of Fully Glycosylated SARS-CoV-2 Spike Protein with Various Antibodies

Dynamic aspects of antibody:oligosaccharide complexes characterized by molecular dynamics simulations and saturation transfer difference nuclear magnetic resonance.

Evaluation of riproximin binding properties reveals a novel mechanism for cellular targeting

GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research.

GlycomeDB--a unified database for carbohydrate structures

Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)

Heparin interactions with apoA1 and SAA in inflammation-associated HDL.

Histo-Blood Group Antigen Presentation Is Critical for Binding of Norovirus VLP to Glycosphingolipids in Model Membranes

Identification and characterization of riproximin, a new type II ribosome-inactivating protein with antineoplastic activity from Ximenia americana.

Identification of a capsular polysaccharide from Moraxella bovis

Identification of inhibitors of Tartrate-resistant acid phosphatase (TRAP/ACP5) activity by small-molecule screening.

Immunoglobulin G1 Fc Domain Motions: Implications for Fc Engineering

Influence of human serum albumin on longitudinal and transverse relaxation rates (r1 and r2) of magnetic resonance contrast agents.

Lectin ligands: new insights into their conformations and their dynamic behavior and the discovery of conformer selection by lectins

Lewis histo-blood group α1,3/α1,4 fucose residues may both mediate binding to GII.4 noroviruses.

Molecular dynamics simulations of glycoclusters and glycodendrimers.

Molecular interaction of artemisinin with translationally controlled tumor protein (TCTP) of Plasmodium falciparum

Mouse Siglec-1 Mediates trans-Infection of Surface-bound Murine Leukemia Virus in a Sialic Acid N-Acyl Side Chain-dependent Manner

Polysialic acid is a cellular receptor for human adenovirus 52.

Proteomics-based screening of the endothelial heparan sulfate interactome reveals that C-type lectin 14a (CLEC14A) is a heparin-binding protein

Rapid generation of a representative ensemble of N-glycan conformations

Symbol Nomenclature for Graphical Representations of Glycans

Synthesis and biological evaluation of 9-N-oxamyl sialosides as Siglec-7 ligands

The Structure of an Infectious Human Polyomavirus and Its Interactions with Cellular Receptors ⬇️

The fungal ligand chitin directly binds TLR2 and triggers inflammation dependent on oligomer size

The small chemical enzyme inhibitor 5-phenylnicotinic acid/CD13 inhibits cell migration and invasion of tartrate-resistant acid phosphatase/ACP5-overexpressing MDA-MB-231 breast cancer cells.

The structural basis of the difference in sensitivity for PNGase F in the de-N-glycosylation of the native bovine pancreatic ribonucleases B and BS.

Uncovering Nonconventional and Conventional Hydrogen Bonds in Oligosaccharides through NMR Experiments and Molecular Modeling: Application to Sialyl Lewis-X.

Viral O-GalNAc peptide epitopes: a novel potential target in viral envelope glycoproteins.