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List of works by Raph L Hamers

2018 update to the HIV-TRePS system: the development of new computational models to predict HIV treatment outcomes, with or without a genotype, with enhanced usability for low-income settings

article

A multicentre point prevalence survey of patterns and quality of antibiotic prescribing in Indonesian hospitals

scientific article published on 26 April 2021

ACORN (A Clinically-Oriented Antimicrobial Resistance Surveillance Network): a pilot protocol for case based antimicrobial resistance surveillance

scientific article published on 27 January 2020

Accumulation of HIV-1 drug resistance after continued virological failure on first-line ART in adults and children in sub-Saharan Africa

scientific article published on 23 June 2016

Adherence to antiretroviral therapy for HIV in sub-Saharan Africa and Asia: a comparative analysis of two regional cohorts

scientific article

Adjunctive dexamethasone for the treatment of HIV-infected adults with tuberculous meningitis (ACT HIV): Study protocol for a randomised controlled trial

article

Adjunctive dexamethasone for the treatment of HIV-infected adults with tuberculous meningitis (ACT HIV): Study protocol for a randomised controlled trial

scientific article published in 2018

Affordable HIV drug-resistance testing for monitoring of antiretroviral therapy in sub-Saharan Africa

scientific article published on 25 August 2016

An update to the HIV-TRePS system: the development and evaluation of new global and local computational models to predict HIV treatment outcomes, with or without a genotype

scientific article published on 20 June 2016

An update to the HIV-TRePS system: the development of new computational models that do not require a genotype to predict HIV treatment outcomes

scientific article

Antibiotic consumption in low-income and middle-income countries

scientific article published on 01 July 2018

Antiretroviral Treatment Sequencing Strategies to Overcome HIV Type 1 Drug Resistance in Adolescents and Adults in Low-Middle-Income Countries ⬇️

scientific article published on June 15, 2013

Averted HIV infections due to expanded antiretroviral treatment eligibility offsets risk of transmitted drug resistance: a modeling study

scientific article published on January 2014

Barriers to Initiation of Pediatric HIV Treatment in Uganda: A Mixed-Method Study

scientific article published on 6 February 2012

Building capacity for the assessment of HIV drug resistance: experiences from the PharmAccess African Studies to Evaluate Resistance network

scientific article published on May 2012

Clinically relevant thresholds for ultrasensitive HIV drug resistance testing: a multi-country nested case-control study

article

Cohort profile: The PharmAccess African (PASER-M) and the TREAT Asia (TASER-M) monitoring studies to evaluate resistance--HIV drug resistance in sub-Saharan Africa and the Asia-Pacific.

scientific article published on 10 November 2010

Collaborative update of a rule-based expert system for HIV-1 genotypic resistance test interpretation

scientific article

Computational models as predictors of HIV treatment outcomes for the Phidisa cohort in South Africa

scientific article

Correction: Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis

scientific article

Correction: Long-Term Antiretroviral Treatment Adherence in HIV-Infected Adolescents and Adults in Uganda: A Qualitative Study

scientific article published on 8 February 2017

Cost-effectiveness of laboratory monitoring for management of HIV treatment in sub-Saharan Africa: a model-based analysis

scientific article published on August 2012

Curbing the rise of HIV drug resistance in low-income and middle-income countries: the role of dolutegravir-containing regimens

scientific article published on 19 March 2019

Diagnostic accuracy of 2 oral fluid-based tests for HIV surveillance in Namibia

scientific article

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa

scientific article published on 06 December 2019

Does Tenofovir-containing First-line Antiretroviral Therapy Mitigate the Impact of Pretreatment Non-nucleoside Reverse Transcriptase Inhibitor Drug Resistance?

scientific article published on 01 May 2019

Dolutegravir for second-line antiretroviral therapy

scientific article published on 04 February 2019

Dolutegravir in sub-Saharan Africa: context is crucial

scientific article published on 29 November 2018

Dried fluid spots for HIV type-1 viral load and resistance genotyping: a systematic review.

scientific article published on January 2009

Early warning indicators for population-based monitoring of HIV drug resistance in 6 African countries

scientific article published on May 2012

Effect of pretreatment HIV-1 drug resistance on immunological, virological, and drug-resistance outcomes of first-line antiretroviral treatment in sub-Saharan Africa: a multicentre cohort study

scientific article published on 27 October 2011

Emergence of untreatable, multidrug-resistant HIV-1 in patients failing second-line therapy in Kenya

scientific article published on 10 April 2017

Emerging HIV-1 drug resistance after roll-out of antiretroviral therapy in sub-Saharan Africa

scientific article published on January 2013

Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis

scientific article

Global threat from drug resistant HIV in sub-Saharan Africa

scientific article published on 18 June 2012

Global trends in antiretroviral resistance in treatment-naive individuals with HIV after rollout of antiretroviral treatment in resource-limited settings: a global collaborative study and meta-regression analysis

scientific article published on 23 July 2012

HIV Type 1 transmission networks among men having sex with men and heterosexuals in Kenya

scientific article published on 17 September 2013

HIV drug resistance in low-income and middle-income countries

article

HIV-1 Drug Resistance Mutations: Potential Applications for Point-of-Care Genotypic Resistance Testing

scientific article

HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression analysis

scientific article published on 30 November 2017

HIV-1 drug resistance in antiretroviral-naive individuals in sub-Saharan Africa after rollout of antiretroviral therapy: a multicentre observational study ⬇️

scientific article published on July 27, 2011

HIV-1 drug resistance in antiretroviral-naive patients in sub-Saharan Africa

scientific article published on 01 March 2013

HIV-1 drug resistance mutations are present in six percent of persons initiating antiretroviral therapy in Lusaka, Zambia

scientific article published in September 2010

HIV-HBV coinfection in Southern Africa and the effect of lamivudine- versus tenofovir-containing cART on HBV outcomes

scientific article published on October 2013

High dose oral rifampicin to improve survival from adult tuberculous meningitis: A randomised placebo-controlled double-blinded phase III trial (the HARVEST study)

scientific article published on 02 December 2019

Increasing the use of second-line therapy is a cost-effective approach to prevent the spread of drug-resistant HIV: a mathematical modelling study.

scientific article

Interaction between Antiretroviral Drugs and Acenocoumarol ⬇️

scientific article published on 01 January 2011

Is increasing pretreatment HIV drug resistance a real menace or minor detail?

scientific article published on 01 May 2020

Long-Term Antiretroviral Treatment Adherence in HIV-Infected Adolescents and Adults in Uganda: A Qualitative Study

scientific article

Low-abundance drug-resistant HIV-1 variants in antiretroviral drug-naïve individuals: A systematic review of detection methods, prevalence, and clinical impact

scientific article published on 06 December 2019

Multi-nucleoside reverse transcriptase inhibitor resistant HIV type-1 in a patient from Sierra Leone failing stavudine, lamivudine and nevirapine.

scientific article

Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration

scientific article published on 19 March 2017

Next-generation sequencing and HIV drug resistance surveillance

scientific article published on 14 September 2016

Nucleoside reverse transcriptase inhibitor resistance mutations associated with first-line stavudine-containing antiretroviral therapy: programmatic implications for countries phasing out stavudine

scientific article published on June 2013

Occult HIV-1 drug resistance to thymidine analogues following failure of first-line tenofovir combined with a cytosine analogue and nevirapine or efavirenz in sub Saharan Africa: a retrospective multi-centre cohort study

scientific article

Patterns of HIV-1 Drug Resistance After First-Line Antiretroviral Therapy (ART) Failure in 6 Sub-Saharan African Countries: Implications for Second-Line ART Strategies ⬇️

scientific article published on April 3, 2012

Plasma Biomarkers of Human Immunodeficiency Virus-Related Systemic Inflammation and Immune Activation in Sub-Saharan Africa Before and During Suppressive Antiretroviral Therapy

scientific article published on 01 August 2019

Plasma inflammatory biomarkers predict CD4+ T-cell recovery and viral rebound in HIV-1 infected Africans on suppressive antiretroviral therapy

scientific article published on 29 December 2020

Pretreatment HIV drug resistance increases regimen switches in sub-Saharan Africa.

scientific article

Pretreatment HIV-1 drug resistance in Africa

scientific article published in June 2013

Prevalence and dynamics of the K65R drug resistance mutation in HIV-1-infected infants exposed to maternal therapy with lamivudine, zidovudine and either nevirapine or nelfinavir in breast milk

scientific article

Previous antiretroviral drug use compromises standard first-line HIV therapy and is mediated through drug-resistance

scientific article published in Scientific Reports

Primary resistance to integrase strand transfer inhibitors in patients infected with diverse HIV-1 subtypes in sub-Saharan Africa.

scientific article published on 14 February 2018

Protease Inhibitor Resistance in the First 3 Years of Second-Line Antiretroviral Therapy for HIV-1 in Sub-Saharan Africa.

scientific article published on 11 July 2016

Second-line antiretroviral treatment successfully resuppresses drug-resistant HIV-1 after first-line failure: prospective cohort in Sub-Saharan Africa

scientific article published on 23 March 2012

Short communication: High prevalence of transmitted antiretroviral drug resistance among newly HIV type 1 diagnosed adults in Mombasa, Kenya

scientific article

Short communication: high rates of thymidine analogue mutations and dual-class resistance among HIV-infected Ugandan children failing first-line antiretroviral therapy

scientific article published on 17 April 2013

Standardized approaches for clinical sampling and endpoint ascertainment in tuberculous meningitis studies

scientific article published on 16 December 2019

Stringent HIV Viral Load Threshold for Virological Failure Using Dried Blood Spots: Is the Perfect the Enemy of the Good?

scientific article published on 22 August 2015

Suboptimal immune recovery during antiretroviral therapy with sustained HIV suppression in sub-Saharan Africa

scientific article published on 15 March 2018

The evolving landscape of HIV drug resistance diagnostics for expanding testing in resource-limited settings

scientific article

The impact of HIV-1 subtypes on virologic and immunologic treatment outcomes at the Lagos University Teaching Hospital: A longitudinal evaluation

scientific article published on 25 August 2020

The relative contributions of HIV drug resistance, nonadherence and low-level viremia to viremic episodes on antiretroviral therapy in sub-Saharan Africa

scientific article published on 01 August 2020

The status of HIV-1 resistance to antiretroviral drugs in sub-Saharan Africa.

scientific article published on January 2008

Transmitted antiretroviral drug resistance among newly HIV-1 diagnosed young individuals in Kampala

scientific article published on April 2011

Unnecessary antiretroviral treatment switches and accumulation of HIV resistance mutations; two arguments for viral load monitoring in Africa

scientific article

When prevention of mother-to-child HIV transmission fails: preventing pretreatment drug resistance in African children

scientific article published on 10 November 2017

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