List of works - Xavier Periole

A direct interaction of cholesterol with the dopamine transporter prevents its out-to-inward transition

scientific article published on 12 January 2018

An Amphotericin B Derivative Equally Potent to Amphotericin B and with Increased Safety

scientific article

Atomistic and Coarse Grain Topologies for the Cofactors Associated with the Photosystem II Core Complex

scientific article published on 8 June 2015

Cholesterol binding to a conserved site modulates conformation, pharmacology and transport kinetics of the human serotonin transporter.

scientific article published on 19 January 2018

Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition

scientific article published on 19 August 2009

Comment on "On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models" by M. Winger, D. Trzesniak, R. Baron and W. F. van Gunsteren, Phys. Chem. Chem. Phys., 2009, 11, 1934

scientific article published on 27 January 2010

Computational 'microscopy' of cellular membranes

scientific article

Convergence and sampling efficiency in replica exchange simulations of peptide folding in explicit solvent

scientific article published on 01 January 2007

Correction to "Atomistic and Coarse Grain Topologies for the Cofactors Associated with the PhotoSystem II Core Complex".

scientific article published on 31 July 2015

DNA-encircled lipid bilayers

scientific article published on 01 October 2018

Dimer Interface of the Human Serotonin Transporter and Effect of the Membrane Composition.

scientific article published on 23 March 2018

Dimerization of Amino Acid Side Chains: Lessons from the Comparison of Different Force Fields

scientific article published on 29 February 2012

Dry Martini, a coarse-grained force field for lipid membrane simulations with implicit solvent

scientific article published on 17 December 2014

Energetics Underlying Twist Polymorphisms in Amyloid Fibrils

scientific article published on 19 December 2017

Evidence for cardiolipin binding sites on the membrane-exposed surface of the cytochrome bc1

scientific article published on 13 February 2013

Exchange pathways of plastoquinone and plastoquinol in the photosystem II complex.

scientific article

Factors That Affect the Degree of Twist in β-Sheet Structures: A Molecular Dynamics Simulation Study of a Cross-β Filament of the GNNQQNY Peptide

Factors that affect the degree of twist in beta-sheet structures: a molecular dynamics simulation study of a cross-beta filament of the GNNQQNY peptide

scientific article published on 01 February 2009

From light-harvesting to photoprotection: structural basis of the dynamic switch of the major antenna complex of plants (LHCII).

scientific article published on 23 October 2015

G Protein-Coupled Receptors Self-Assemble in Dynamics Simulations of Model Bilayers

article

Identification of cardiolipin binding sites on cytochrome c oxidase at the entrance of proton channels.

scientific article published on 12 February 2013

Improved Angle Potentials for Coarse-Grained Molecular Dynamics Simulations.

scientific article published on 16 July 2013

Improved Parameters for the Martini Coarse-Grained Protein Force Field.

scientific article published on 28 November 2012

In silico design of robust bolalipid membranes

scientific article published on 01 December 2011

Insight into the molecular mechanism behind PEG-mediated stabilization of biofluid lipases

scientific article published in Scientific Reports

Interplay of G Protein-Coupled Receptors with the Membrane: Insights from Supra-Atomic Coarse Grain Molecular Dynamics Simulations.

scientific article published on 29 November 2016

Key issues in the computational simulation of GPCR function: representation of loop domains.

scientific article

Lipid organization of the plasma membrane

scientific article

Molecular Dynamics of Photosystem II Embedded in the Thylakoid Membrane

scientific article

Molecular Modeling Investigation of the Interaction between Humicola insolens Cutinase and SDS Surfactant Suggests a Mechanism for Enzyme Inactivation

scientific article published on 19 March 2019

Molecular dynamics simulations from putative transition states of alpha-spectrin SH3 domain

scientific article

Molecular dynamics simulations of transducin: interdomain and front to back communication in activation and nucleotide exchange.

scientific article

Molecular dynamics simulations reveal that apo-HisJ can sample a closed conformation.

scientific article

Molecular mechanism of cardiolipin-mediated assembly of respiratory chain supercomplexes.

scientific article published on 15 March 2016

Phytochemicals perturb membranes and promiscuously alter protein function.

scientific article

Probing the free energy landscape of the FBP28WW domain using multiple techniques

scientific article published on 01 May 2009

Rhodopsin forms a dimer with cytoplasmic helix 8 contacts in native membranes.

scientific article published on 27 February 2012

Structural determinants of the supramolecular organization of G protein-coupled receptors in bilayers.

scientific article

The MARTINI Coarse-Grained Force Field: Extension to Proteins.

scientific article published in May 2008

The power of coarse graining in biomolecular simulations.

scientific article

List of works by Xavier Periole

A direct interaction of cholesterol with the dopamine transporter prevents its out-to-inward transition

An Amphotericin B Derivative Equally Potent to Amphotericin B and with Increased Safety

Atomistic and Coarse Grain Topologies for the Cofactors Associated with the Photosystem II Core Complex

Cholesterol binding to a conserved site modulates conformation, pharmacology and transport kinetics of the human serotonin transporter.

Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition

Comment on "On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models" by M. Winger, D. Trzesniak, R. Baron and W. F. van Gunsteren, Phys. Chem. Chem. Phys., 2009, 11, 1934

Computational 'microscopy' of cellular membranes

Convergence and sampling efficiency in replica exchange simulations of peptide folding in explicit solvent

Correction to "Atomistic and Coarse Grain Topologies for the Cofactors Associated with the PhotoSystem II Core Complex".

DNA-encircled lipid bilayers

Dimer Interface of the Human Serotonin Transporter and Effect of the Membrane Composition.

Dimerization of Amino Acid Side Chains: Lessons from the Comparison of Different Force Fields

Dry Martini, a coarse-grained force field for lipid membrane simulations with implicit solvent

Energetics Underlying Twist Polymorphisms in Amyloid Fibrils

Evidence for cardiolipin binding sites on the membrane-exposed surface of the cytochrome bc1

Exchange pathways of plastoquinone and plastoquinol in the photosystem II complex.

Factors That Affect the Degree of Twist in β-Sheet Structures: A Molecular Dynamics Simulation Study of a Cross-β Filament of the GNNQQNY Peptide

Factors that affect the degree of twist in beta-sheet structures: a molecular dynamics simulation study of a cross-beta filament of the GNNQQNY peptide

From light-harvesting to photoprotection: structural basis of the dynamic switch of the major antenna complex of plants (LHCII).

G Protein-Coupled Receptors Self-Assemble in Dynamics Simulations of Model Bilayers

Identification of cardiolipin binding sites on cytochrome c oxidase at the entrance of proton channels.

Improved Angle Potentials for Coarse-Grained Molecular Dynamics Simulations.

Improved Parameters for the Martini Coarse-Grained Protein Force Field.

In silico design of robust bolalipid membranes

Insight into the molecular mechanism behind PEG-mediated stabilization of biofluid lipases

Interplay of G Protein-Coupled Receptors with the Membrane: Insights from Supra-Atomic Coarse Grain Molecular Dynamics Simulations.

Key issues in the computational simulation of GPCR function: representation of loop domains.

Lipid organization of the plasma membrane

Molecular Dynamics of Photosystem II Embedded in the Thylakoid Membrane

Molecular Modeling Investigation of the Interaction between Humicola insolens Cutinase and SDS Surfactant Suggests a Mechanism for Enzyme Inactivation

Molecular dynamics simulations from putative transition states of alpha-spectrin SH3 domain

Molecular dynamics simulations of transducin: interdomain and front to back communication in activation and nucleotide exchange.

Molecular dynamics simulations reveal that apo-HisJ can sample a closed conformation.

Molecular mechanism of cardiolipin-mediated assembly of respiratory chain supercomplexes.

Phytochemicals perturb membranes and promiscuously alter protein function.

Probing the free energy landscape of the FBP28WW domain using multiple techniques

Rhodopsin forms a dimer with cytoplasmic helix 8 contacts in native membranes.

Structural determinants of the supramolecular organization of G protein-coupled receptors in bilayers.

The MARTINI Coarse-Grained Force Field: Extension to Proteins.

The power of coarse graining in biomolecular simulations.