List of works - Federico Tosoni

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures

scientific article

A Proteome-wide Domain-centric Perspective on Protein Phosphorylation

scientific article

AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation

scientific article published on December 2014

Adaptation of a 2D in-gel kinase assay to trace phosphotransferase activities in the human pathogen Leishmania donovani

scientific article

Alternative splicing tends to avoid partial removals of protein-protein interaction sites

scientific article

B-Pred, a structure based B-cell epitopes prediction server

scientific article

Convergent evolution of enzyme active sites is not a rare phenomenon

scientific article published on 14 June 2007

Enrichment of Leishmania donovani ATP-binding proteins using a staurosporine capture compound

scientific article published on 16 May 2013

Erratum: Corrigendum: AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation

scholarly article published in Nature Cell Biology

Experimental and computational methods for the analysis and modeling of signaling networks

scientific article

Exploring the diversity of SPRY/B30.2-mediated interactions

scientific article published on 17 November 2012

False occurrences of functional motifs in protein sequences highlight evolutionary constraints

scientific article

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures

scientific article (publication date: 26 March 2008)

High response rate to PD-1 blockade in desmoplastic melanomas

scientific article published on 10 January 2018

Highly multiplexed simultaneous detection of RNAs and proteins in single cells

scientific article

IMMUNOLOGY. An interactive reference framework for modeling a dynamic immune system

scientific article published on July 2015

Identification from chest x-rays: reliability of bone density patterns of the humerus

scientific article published on 11 February 2010

Identification of Leishmania-specific protein phosphorylation sites by LC-ESI-MS/MS and comparative genomics analyses

scientific article

Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

scientific article

Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity

scientific article

Mapping the Fetomaternal Peripheral Immune System at Term Pregnancy

scientific article published on 28 October 2016

Mapping the human phosphatome on growth pathways

scientific article

Modular architecture of nucleotide-binding pockets.

scientific article

PhosTryp: a phosphorylation site predictor specific for parasitic protozoa of the family trypanosomatidae

scientific article

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures

scientific article

Phosphate binding sites identification in protein structures

scientific article

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites

scientific article

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites

scientific article

Phosphoproteomic analysis of differentiating Leishmania parasites reveals a unique stage-specific phosphorylation motif

scientific article published on 11 June 2013

Regulation dynamics of Leishmania differentiation: deconvoluting signals and identifying phosphorylation trends

scientific article

Single-cell systems-level analysis of human Toll-like receptor activation defines a chemokine signature in patients with systemic lupus erythematosus

scientific article

Structural motifs recurring in different folds recognize the same ligand fragments

scientific article

Structure-based function prediction: approaches and applications.

scientific article

Superpose3D: a local structural comparison program that allows for user-defined structure representations

scientific article

Systemic Immunity Is Required for Effective Cancer Immunotherapy

scientific article published on 10 January 2017

What has proteomics taught us about Leishmania development?

scientific article published on 28 February 2012

List of works by Federico Tosoni

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures

A Proteome-wide Domain-centric Perspective on Protein Phosphorylation

AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation

Adaptation of a 2D in-gel kinase assay to trace phosphotransferase activities in the human pathogen Leishmania donovani

Alternative splicing tends to avoid partial removals of protein-protein interaction sites

B-Pred, a structure based B-cell epitopes prediction server

Convergent evolution of enzyme active sites is not a rare phenomenon

Enrichment of Leishmania donovani ATP-binding proteins using a staurosporine capture compound

Erratum: Corrigendum: AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation

Experimental and computational methods for the analysis and modeling of signaling networks

Exploring the diversity of SPRY/B30.2-mediated interactions

False occurrences of functional motifs in protein sequences highlight evolutionary constraints

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures

High response rate to PD-1 blockade in desmoplastic melanomas

Highly multiplexed simultaneous detection of RNAs and proteins in single cells

IMMUNOLOGY. An interactive reference framework for modeling a dynamic immune system

Identification from chest x-rays: reliability of bone density patterns of the humerus

Identification of Leishmania-specific protein phosphorylation sites by LC-ESI-MS/MS and comparative genomics analyses

Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity

Mapping the Fetomaternal Peripheral Immune System at Term Pregnancy

Mapping the human phosphatome on growth pathways

Modular architecture of nucleotide-binding pockets.

PhosTryp: a phosphorylation site predictor specific for parasitic protozoa of the family trypanosomatidae

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures

Phosphate binding sites identification in protein structures

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites

Phosphoproteomic analysis of differentiating Leishmania parasites reveals a unique stage-specific phosphorylation motif

Regulation dynamics of Leishmania differentiation: deconvoluting signals and identifying phosphorylation trends

Single-cell systems-level analysis of human Toll-like receptor activation defines a chemokine signature in patients with systemic lupus erythematosus

Structural motifs recurring in different folds recognize the same ligand fragments

Structure-based function prediction: approaches and applications.

Superpose3D: a local structural comparison program that allows for user-defined structure representations

Systemic Immunity Is Required for Effective Cancer Immunotherapy

What has proteomics taught us about Leishmania development?