List of works by Eleazar Eskin

"Good enough solutions" and the genetics of complex diseases

scientific article

A GWAS approach identifies Dapp1 as a determinant of air pollution-induced airway hyperreactivity

scientific article published on 23 December 2019

A comparison of phasing algorithms for trios and unrelated individuals

scientific article

A general framework for meta-analyzing dependent studies with overlapping subjects in association mapping

scientific article

A high-resolution association mapping panel for the dissection of complex traits in mice

scientific article

A model-based approach for analysis of spatial structure in genetic data

scientific article

A note on phasing long genomic regions using local haplotype predictions

scientific article published in June 2006

A sequence-based variation map of 8.27 million SNPs in inbred mouse strains

scientific article published on 29 July 2007

A spatial haplotype copying model with applications to genotype imputation

scientific article published on 19 December 2014

Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models

scientific article

Accurate and fast multiple-testing correction in eQTL studies

scientific article published on 28 May 2015

Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots

scientific article published on 14 September 2008

Accurate viral population assembly from ultra-deep sequencing data

scientific article

Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX.

scientific article published on 15 July 2017

Allele-specific expression and eQTL analysis in mouse adipose tissue

scientific article

An ancestry-based approach for detecting interactions

scientific article published on 8 November 2017

An integrated -omics analysis of the epigenetic landscape of gene expression in human blood cells.

scientific article published on 19 June 2018

An optimal weighted aggregated association test for identification of rare variants involved in common diseases

scientific article

Analysis of allele-specific expression in mouse liver by RNA-Seq: a comparison with Cis-eQTL identified using genetic linkage

scientific article published on 11 September 2013

Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping

scientific article

Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes

scientific article published on July 2017

Assembly of non-unique insertion content using next-generation sequencing

scientific article

Assessing computational tools for the discovery of transcription factor binding sites

scientific article

BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference

article

CNVeM: copy number variation detection using uncertainty of read mapping

scientific article published on 19 February 2013

Catecholamine release-inhibitory peptide catestatin (chromogranin A(352-372)): naturally occurring amino acid variant Gly364Ser causes profound changes in human autonomic activity and alters risk for hypertension

scientific article published on 16 April 2007

Characterization of Expression Quantitative Trait Loci in Pedigrees from Colombia and Costa Rica Ascertained for Bipolar Disorder

scientific article

Colocalization of GWAS and eQTL Signals Detects Target Genes

scientific article

Comparative analysis of proteome and transcriptome variation in mouse

scientific article

Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation

scientific article

Correction: Genetic Architecture of Atherosclerosis in Mice: A Systems Genetics Analysis of Common Inbred Strains

scientific article published on 2 March 2016

Correction: Genome-Wide Association Study Identifies Nox3 as a Critical Gene for Susceptibility to Noise-Induced Hearing Loss

scientific article published on 11 June 2015

Correction: Mapping Genetic Variants Associated with Beta-Adrenergic Responses in Inbred Mice.

scientific article published on 3 January 2014

Detecting the presence and absence of causal relationships between expression of yeast genes with very few samples

scientific article

Detection and reconstruction of tandemly organized de novo copy number variations

scientific article

Discovering Single Nucleotide Polymorphisms Regulating Human Gene Expression Using Allele Specific Expression from RNA-seq Data

scientific article

Discovering tightly regulated and differentially expressed gene sets in whole genome expression data

scientific article

Discrete profile comparison using information bottleneck

scientific article

Diversity, differentiation, and linkage disequilibrium: prospects for association mapping in the malaria vector Anopheles arabiensis

scientific article published on 10 January 2014

EMINIM: an adaptive and memory-efficient algorithm for genotype imputation

scientific article

Effectively identifying eQTLs from multiple tissues by combining mixed model and meta-analytic approaches

scientific article

Effectively identifying regulatory hotspots while capturing expression heterogeneity in gene expression studies

scientific article

Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions

scientific article

Efficient and Accurate Multiple-Phenotype Regression Method for High Dimensional Data Considering Population Structure

scientific article

Efficient control of population structure in model organism association mapping

scientific article published on March 2008

Efficient multiple-trait association and estimation of genetic correlation using the matrix-variate linear mixed model

scientific article published on 27 February 2015

Efficient reconstruction of haplotype structure via perfect phylogeny

scientific article

Efficiently identifying significant associations in genome-wide association studies

scientific article published on 14 September 2013

Fast and Accurate Construction of Confidence Intervals for Heritability

scientific article published on June 2016

Fast pairwise IBD association testing in genome-wide association studies

scientific article published on 24 October 2013

Fine mapping in 94 inbred mouse strains using a high-density haplotype resource

scientific article

ForestPMPlot: A Flexible Tool for Visualizing Heterogeneity Between Studies in Meta-analysis

scientific article published on 18 May 2016

Functional genomic assessment of phosgene-induced acute lung injury in mice

scientific article published on September 2013

Further evidence for association of GRK3 to bipolar disorder suggests a second disease mutation

scientific article published in December 2007

Gene networks associated with conditional fear in mice identified using a systems genetics approach

scientific article

Gene-Gene Interactions Detection Using a Two-stage Model

scientific article published on 14 April 2015

Genetic Architecture of Atherosclerosis in Mice: A Systems Genetics Analysis of Common Inbred Strains

scientific article (publication date: December 2015)

Genetic and environmental control of host-gut microbiota interactions

scientific article published on 10 August 2015

Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice

scientific article

Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate

scientific article

Genome reassembly with high-throughput sequencing data

scientific article

Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease

scientific article

Genome-wide association mapping of blood cell traits in mice

scientific article published on 17 February 2013

Genome-wide association mapping with longitudinal data

scientific article

Genome-wide association studies in mice

scientific article published on 9 October 2012

Genome-wide association study for age-related hearing loss (AHL) in the mouse: a meta-analysis

scientific article

Genome-wide association study identifies nox3 as a critical gene for susceptibility to noise-induced hearing loss

scientific article

Genome-wide case/control studies in hypertension: only the 'tip of the iceberg'.

scientific article

Genotyping common and rare variation using overlapping pool sequencing

scientific article

Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data

scientific article

Hap-seqX: expedite algorithm for haplotype phasing with imputation using sequence data

scientific article

Haplotype reconstruction from genotype data using Imperfect Phylogeny

scientific article

High-Density Genotypes of Inbred Mouse Strains: Improved Power and Precision of Association Mapping

scientific article

High-resolution association mapping of atherosclerosis loci in mice

scientific article

High-resolution mapping of gene expression using association in an outbred mouse stock

scientific article

Hybrid mouse diversity panel: a panel of inbred mouse strains suitable for analysis of complex genetic traits

scientific article

Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes

scientific article (publication date: 13 September 2016)

IPED2: Inheritance Path based Pedigree Reconstruction Algorithm for Complicated Pedigrees

scientific article

IPED2X: a robust pedigree reconstruction algorithm for complicated pedigrees

scientific article published on December 2014

IPED: inheritance path-based pedigree reconstruction algorithm using genotype data

scientific article

Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum

scientific article

Identification of causal genes for complex traits

scientific article

Identification of novel genes that mediate innate immunity using inbred mice

scientific journal article

Identifying causal variants at loci with multiple signals of association

scientific article

Identifying genetic relatives without compromising privacy

scientific article published on 10 March 2014

Improved linear mixed models for genome-wide association studies

scientific article published on 30 May 2012

Improved methods for multi-trait fine mapping of pleiotropic risk loci

scientific article published on 22 September 2016

Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies

scientific article published on 01 October 2018

Improving the accuracy and efficiency of partitioning heritability into the contributions of genomic regions

scientific article published on April 2013

Imputation aware meta-analysis of genome-wide association studies

scientific article

Imputing Phenotypes for Genome-wide Association Studies

scientific article published on 08 June 2016

In silico QTL mapping of basal liver iron levels in inbred mouse strains

scientific article

Incorporating homologues into sequence embeddings for protein analysis.

scientific article published in June 2007

Incorporating prior information into association studies

scientific article

Incorporation of Biological Knowledge Into the Study of Gene-Environment Interactions

scientific article published in October 2017

Increased power of mixed models facilitates association mapping of 10 loci for metabolic traits in an isolated population

scientific article

Increasing association mapping power and resolution in mouse genetic studies through the use of meta-analysis for structured populations

scientific article

Increasing power in association studies by using linkage disequilibrium structure and molecular function as prior information

scientific article published on 18 March 2008

Increasing power of genome-wide association studies by collecting additional single-nucleotide polymorphisms

scientific article

Increasing power of groupwise association test with likelihood ratio test

scientific article published on 15 September 2011

Inference and analysis of haplotypes from combined genotyping studies deposited in dbSNP

scientific article

Integrated computational and experimental analysis of the neuroendocrine transcriptome in genetic hypertension identifies novel control points for the cardiometabolic syndrome

scientific article

Integrating functional data to prioritize causal variants in statistical fine-mapping studies

scientific article

Interpreting meta-analyses of genome-wide association studies

scientific article

Laplace Propagation ⬇️

scientific article published in January 2004

Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data

scientific article

Leveraging the HapMap correlation structure in association studies

scientific article published on 2 March 2007

Limited RNA editing in exons of mouse liver and adipose

scientific article published on 14 February 2013

Linkage effects and analysis of finite sample errors in the HapMap

scientific article

Local genetic effects on gene expression across 44 human tissues

article

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants.

scientific article published on 30 November 2016

Mapping genetic variants associated with beta-adrenergic responses in inbred mice

scientific article

Memory efficient assembly of human genome

scientific article published on 17 December 2014

Meta-analysis identifies gene-by-environment interactions as demonstrated in a study of 4,965 mice

scientific article published on 09 January 2014

Mismatch string kernels for discriminative protein classification

scientific article published on 22 January 2004

Mixed models can correct for population structure for genomic regions under selection

scientific article published on 26 February 2013

Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity ⬇️

scientific article

Mouse genome-wide association and systems genetics identify Asxl2 as a regulator of bone mineral density and osteoclastogenesis

scientific article

Multi-marker tagging single nucleotide polymorphism selection using estimation of distribution algorithms

scientific article

Multiple testing correction in linear mixed models

scientific article published on April 2016

Natural variation within the neuronal nicotinic acetylcholine receptor cluster on human chromosome 15q24: influence on heritable autonomic traits in twin pairs

scientific article published on 11 August 2009

Optimal algorithms for haplotype assembly from whole-genome sequence data

scientific article

Polymorphisms and haplotypes of the regulator of G protein signaling-2 gene in normotensives and hypertensives.

scientific article published on 23 January 2006

Population structure in genetic studies: Confounding factors and mixed models

Postassociation cleaning using linkage disequilibrium information

scientific article published in January 2011

Privacy preserving protocol for detecting genetic relatives using rare variants

scientific article

Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing

scientific article published on 19 June 2020

Protein family classification using sparse markov transducers

scientific article

Quantitative analysis of 3-dimensional facial soft tissue photographic images: technical methods and clinical application

scientific article published on 2 July 2015

ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues.

scientific article published on 15 February 2018

Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies

scientific article

Rapid and accurate multiple testing correction and power estimation for millions of correlated markers

scientific article

Rare variant association testing under low-coverage sequencing

scientific article published on May 2013

Searching genomes for noncoding RNA using FastR.

scientific article

Selection in Europeans on Fatty Acid Desaturases Associated with Dietary Changes

scientific article

Selection on the FADS region in Europeans

Simultaneous Modeling of Disease Status and Clinical Phenotypes To Increase Power in Genome-Wide Association Studies

scientific article published on 27 January 2017

Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies

scientific article

Spatial localization of recent ancestors for admixed individuals

scientific article

Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing

scientific article published on 03 September 2020

Systems genetic analysis of osteoblast-lineage cells

scientific article

The Genetic Architecture of Hearing Impairment in Mice: Evidence for Frequency-Specific Genetic Determinants

scientific article

The Genetic Architecture of Noise-Induced Hearing Loss: Evidence for a Gene-by-Environment Interaction

scientific article

The Genetic Basis of Host Preference and Resting Behavior in the Major African Malaria Vector, Anopheles arabiensis

scientific article (publication date: September 2016)

The Genetic Landscape of Hematopoietic Stem Cell Frequency in Mice

scientific article published on 4 June 2015

The Hybrid Mouse Diversity Panel: a resource for systems genetics analyses of metabolic and cardiovascular traits

scientific article

The Minnesota Center for Twin and Family Research genome-wide association study

scientific article published on December 2012

The spectrum kernel: a string kernel for SVM protein classification.

scientific article published in January 2002

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia.

scientific article published on 10 May 2018

Using genomic annotations increases statistical power to detect eGenes

scientific article published on June 2016

Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast

scientific article

Using substitution matrices to estimate probability distributions for biological sequences

scientific article published in January 2002

Variance component model to account for sample structure in genome-wide association studies

scientific article

Whole-genome analysis of Alu repeat elements reveals complex evolutionary history

scientific article (publication date: November 2004)

Widespread Allelic Heterogeneity in Complex Traits

scientific article published on May 2017

eALPS: estimating abundance levels in pooled sequencing using available genotyping data

scientific article

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