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List of works by Alisdair R Fernie

13CO2 Labeling and Mass Spectral Analysis of Photorespiration

scientific article published in January 2017

13CO2 labeling kinetics in maize reveal impaired efficiency of C4 photosynthesis under low irradiance

scientific article published on 25 June 2022

2-Oxoglutarate: linking TCA cycle function with amino acid, glucosinolate, flavonoid, alkaloid, and gibberellin biosynthesis

scientific article

A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress

scientific article published on 11 January 2020

A Highly Efficient <i>Agrobacterium</i>-Mediated Method for Transient Gene Expression and Functional Studies in Multiple Plant Species

scientific article published on 05 February 2020

A MYB Triad Controls Primary and Phenylpropanoid Metabolites for Pollen Coat Patterning

scientific article published on 12 February 2019

A NAC transcription factor and its interaction protein hinder abscisic acid biosynthesis by synergistically repressing NCED5 in Citrus reticulata

scientific article published on 31 May 2020

A Novel Mechanism, Linked to Cell Density, Largely Controls Cell Division in Synechocystis

scientific article published on 23 June 2017

A Subsidiary Cell-Localized Glucose Transporter Promotes Stomatal Conductance and Photosynthesis

scientific article published on 17 April 2019

A bypass of sucrose synthase leads to low internal oxygen and impaired metabolic performance in growing potato tubers

scientific article published in August 2003

A cell wall-bound adenosine nucleosidase is involved in the salvage of extracellular ATP in Solanum tuberosum

scientific article

A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms

scientific article published on 25 September 2012

A cross-kingdom history

scientific article published on 15 April 2015

A cytosolic pathway for the conversion of hydroxypyruvate to glycerate during photorespiration in Arabidopsis

scientific article

A deficiency in the flavoprotein of Arabidopsis mitochondrial complex II results in elevated photosynthesis and better growth in nitrogen-limiting conditions

scientific article published on 15 September 2011

A diminution in ascorbate oxidase activity affects carbon allocation and improves yield in tomato under water deficit.

scientific article published on 18 July 2012

A gene-stacking approach to overcome the trade-off between drought stress tolerance and growth in Arabidopsis

article

A genetically validated approach for detecting inorganic polyphosphates in plants

scientific article published on 09 December 2019

A mitochondrial GABA permease connects the GABA shunt and the TCA cycle, and is essential for normal carbon metabolism

scientific article published on 31 May 2011

A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts

scientific article published on 09 September 2020

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana

scientific article published on 27 June 2019

A phased genome based on single sperm sequencing reveals crossover pattern and complex relatedness in tea plants

scientific article published on 29 October 2020

A plastidial pantoate transporter with a potential role in pantothenate synthesis

scientific article published on 30 January 2018

A push, and a pull, to enhance nitrogen use efficiency in rice

scientific article published on 01 July 2020

A reciprocal 15N-labeling proteomic analysis of expanding Arabidopsis leaves subjected to osmotic stress indicates importance of mitochondria in preserving plastid functions

scientific article published on 25 January 2011

A redox-mediated modulation of stem bolting in transgenic Nicotiana sylvestris differentially expressing the external mitochondrial NADPH dehydrogenase

scientific article

A reevaluation of the key factors that influence tomato fruit softening and integrity

scientific article published on 20 April 2007

A root phloem pole cell atlas reveals common transcriptional states in protophloem-adjacent cells

scientific article published in 2022

A seed high‐lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination ⬇️

scientific article published on October 11, 2010

A sucrose transporter-interacting protein disulphide isomerase affects redox homeostasis and links sucrose partitioning with abiotic stress tolerance

scientific article published on 15 December 2015

A topological map of the compartmentalized Arabidopsis thaliana leaf metabolome ⬇️

scientific article

ADP-glucose pyrophosphorylase-deficient pea embryos reveal specific transcriptional and metabolic changes of carbon-nitrogen metabolism and stress responses.

scientific article

ASR1 mediates glucose-hormone cross talk by affecting sugar trafficking in tobacco plants.

scientific article

Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis

scientific article published on 26 August 2009

Abscisic acid deficiency of developing pea embryos achieved by immunomodulation attenuates developmental phase transition and storage metabolism.

scientific article published on 4 November 2010

Acclimation in plants - the Green Hub consortium

scientific article published on 23 December 2020

Acquisition of Volatile Compounds by Gas Chromatography-Mass Spectrometry (GC-MS).

scientific article published in January 2018

Action of gibberellins on growth and metabolism of Arabidopsis plants associated with high concentration of carbon dioxide

scientific article (publication date: December 2012)

Activation of R-mediated innate immunity and disease susceptibility is affected by mutations in a cytosolic O-acetylserine (thiol) lyase in Arabidopsis

scientific article published on 5 November 2012

Activation of pyrophosphate:fructose-6-phosphate 1-phosphotransferase by fructose 2,6-bisphosphate stimulates conversion of hexose phosphates to triose phosphates but does not influence accumulation of carbohydrates in phosphate-deficient tobacco ce

scientific article published on February 2002

Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants

scientific article published on 01 September 2020

Adenine nucleotide transport in plants: much more than a mitochondrial issue ⬇️

scientific article published on May 31, 2011

Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis

scientific article published on 25 November 2008

Adjustments of embryonic photosynthetic activity modulate seed fitness in Arabidopsis thaliana.

scientific article published on 25 September 2014

Advances in metabolic flux analysis toward genome-scale profiling of higher organisms

scholarly article by Georg Basler published in October 2018

Alteration of mitochondrial protein complexes in relation to metabolic regulation under short-term oxidative stress in Arabidopsis seedlings ⬇️

scientific article published on December 10, 2010

Alteration of organic acid metabolism in Arabidopsis overexpressing the maize C4 NADP-malic enzyme causes accelerated senescence during extended darkness

scientific article published on 20 September 2007

Alteration of the interconversion of pyruvate and malate in the plastid or cytosol of ripening tomato fruit invokes diverse consequences on sugar but similar effects on cellular organic acid, metabolism, and transitory starch accumulation.

scientific article

Alterations in cytosolic glucose-phosphate metabolism affect structural features and biochemical properties of starch-related heteroglycans

scientific article published on 19 September 2008

Altered activity of the P2 isoform of plastidic glucose 6-phosphate dehydrogenase in tobacco (Nicotiana tabacum cv. Samsun) causes changes in carbohydrate metabolism and response to oxidative stress in leaves

scientific article published in April 2004

Altering trehalose-6-phosphate content in transgenic potato tubers affects tuber growth and alters responsiveness to hormones during sprouting

scientific article published on 13 June 2011

Alternative oxidase: a defence against metabolic fluctuations?

scientific article published on 21 May 2009

An <i>Ascophyllum nodosum</i>-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress

scientific article published on 31 December 2020

An Abundance and Interaction Encyclopedia of Plant Protein Function

scientific article published on 26 April 2020

An In Vivo Perspective of the Role(s) of the Alternative Oxidase Pathway

scientific article

An Integrated Multi-layered Analysis of the Metabolic Networks of Different Tissues Uncovers Key Genetic Components of Primary Metabolism in Maize

scientific article published on 30 January 2018

An L,L-diaminopimelate aminotransferase mutation leads to metabolic shifts and growth inhibition in Arabidopsis

scientific article published on 01 November 2018

An Overview of Compounds Derived from the Shikimate and Phenylpropanoid Pathways and Their Medicinal Importance

scientific article published on 24 June 2016

An allele of ZmPORB2 encoding a protochlorophyllide oxidoreductase promotes tocopherol accumulation in both leaves and kernels of maize

scientific article published on 03 July 2019

An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water-deficit stress

scientific article published on 07 May 2020

An integrated functional approach to dissect systemic responses in maize to arbuscular mycorrhizal symbiosis

scientific article published on 9 April 2015

An integrated genomics approach to define niche establishment by Rhodococcus fascians

scientific article published on 31 December 2008

An orange ripening mutant links plastid NAD(P)H dehydrogenase complex activity to central and specialized metabolism during tomato fruit maturation

scientific article published on 22 June 2010

An update on source-to-sink carbon partitioning in tomato

scientific article

Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation

scientific article published on 20 August 2010

Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions

scientific article published on 06 February 2014

Analysis of Tomato Post-Harvest Properties: Fruit Color, Shelf Life, and Fungal Susceptibility

scientific article published on 01 June 2020

Analysis of a range of catabolic mutants provides evidence that phytanoyl-coenzyme A does not act as a substrate of the electron-transfer flavoprotein/electron-transfer flavoprotein:ubiquinone oxidoreductase complex in Arabidopsis during dark-induced

article

Analysis of kinetic labeling of amino acids and organic acids by GC-MS

scientific article published on 01 January 2014

Analysis of knockout mutants reveals non-redundant functions of poly(ADP-ribose)polymerase isoforms in Arabidopsis

scientific article

Analysis of metabolic alterations inArabidopsisfollowing changes in the carbon dioxide and oxygen partial pressures

scientific article published on 25 August 2014

Analysis of subcellular metabolite levels of potato tubers (Solanum tuberosum) displaying alterations in cellular or extracellular sucrose metabolism

scientific article published on 27 February 2008

Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis

scientific article published on 9 June 2006

Analysis of the interface between primary and secondary metabolism in catharanthus roseus cell cultures using (13)C-stable isotope feeding and coupled mass spectrometry

scientific article

Annotation of plant gene function via combined genomics, metabolomics and informatics

scientific article published on 17 June 2012

Antisense inhibition of the 2-oxoglutarate dehydrogenase complex in tomato demonstrates its importance for plant respiration and during leaf senescence and fruit maturation

scientific article published on 29 June 2012

Antisense inhibition of the iron-sulphur subunit of succinate dehydrogenase enhances photosynthesis and growth in tomato via an organic acid-mediated effect on stomatal aperture

article

Antisense repression of cytosolic phosphoglucomutase in potato (Solanum tuberosum) results in severe growth retardation, reduction in tuber number and altered carbon metabolism

scientific article

Antisense suppression of the small chloroplast protein CP12 in tobacco alters carbon partitioning and severely restricts growth

scientific article published on 24 August 2011

Application of GC-MS for the detection of lipophilic compounds in diverse plant tissues

scientific article published on 24 April 2009

Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod

scientific article published on 05 March 2019

Arabidopsis BPM proteins function as substrate adaptors to a cullin3-based E3 ligase to affect fatty acid metabolism in plants

scientific article published on 21 June 2013

Arabidopsis Fructokinases Are Important for Seed Oil Accumulation and Vascular Development

scientific article published on January 2016

Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato

scientific article published on 7 March 2017

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

scientific article published on 15 February 2019

Arabidopsis seed development and germination is associated with temporally distinct metabolic switches.

scientific article

Arabidopsis uses two gluconeogenic gateways for organic acids to fuel seedling establishment

scientific article published on 10 April 2015

Ascorbate and Thiamin: Metabolic Modulators in Plant Acclimation Responses

scientific article published on 13 January 2020

Assessing durum wheat ear and leaf metabolomes in the field through hyperspectral data

scientific article published on 05 December 2019

At long last: evidence for pexophagy in plants

scientific article

AtABCG29 is a monolignol transporter involved in lignin biosynthesis

scientific article

Author Correction: Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance

scientific article published on 16 December 2020

Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data

scientific article published on 09 November 2020

Autophagy Deficiency Compromises Alternative Pathways of Respiration following Energy Deprivation in Arabidopsis thaliana

scientific article published on 14 July 2017

Autophagy in Plants--What's New on the Menu?

scientific article

BRAHMA ATPase of the SWI/SNF chromatin remodeling complex acts as a positive regulator of gibberellin-mediated responses in arabidopsis

scientific article

Balancing of B6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis. ⬇️

scientific article published on 8 February 2016

Balancing the double-edged sword effect of increased resistant starch content and its impact on rice texture: its genetics and molecular physiological mechanisms

scientific article published on 16 January 2020

Biochemical and Functional Characterization of a Mitochondrial Citrate Carrier in Arabidopsis thaliana

scientific article published on 24 April 2020

Biochemical characterization of Euphorbia resinifera floral cyathia

scientific article published in 2024

Biosynthesis of the essential respiratory cofactor ubiquinone from phenylalanine in plants

scientific article

Born to revive: molecular and physiological mechanisms of double tolerance in a paleotropical and resurrection plant

scientific article published on 25 March 2020

Branched-Chain Amino Acid Catabolism Impacts Triacylglycerol Homeostasis in

scientific article published on 06 February 2019

Broadening Our Portfolio in the Genetic Improvement of Maize Chemical Composition

scientific article published on 24 May 2016

C acid decarboxylases required for C photosynthesis are active in the mid-vein of the C species Arabidopsis thaliana, and are important in sugar and amino acid metabolism

scientific article published on 6 October 2009

Can cyanobacteria serve as a model of plant photorespiration? - a comparative meta-analysis of metabolite profiles

scientific article published on 11 March 2016

Can stable isotope mass spectrometry replace radiolabelled approaches in metabolic studies?

scientific article published on 14 May 2016

Canalization of Tomato Fruit Metabolism

scientific article published in November 2017

Carbon Atomic Survey for Identification of Selected Metabolic Fluxes

scientific article published on 01 January 2018

Carbon assimilation and metabolism in potato leaves deficient in plastidial phosphoglucomutase

scientific article published on 29 June 2002

Cassava Metabolomics and Starch Quality

scientific article published on 01 December 2019

Catabolism of branched chain amino acids supports respiration but not volatile synthesis in tomato fruits

scientific article published on 22 December 2011

Cellulose-Microtubule Uncoupling Proteins Prevent Lateral Displacement of Microtubules during Cellulose Synthesis in Arabidopsis

scientific article published on 28 July 2016

Central role of FaGAMYB in the transition of the strawberry receptacle from development to ripening

scientific article

Changes in intracellular NAD status affect stomatal development in an abscisic acid-dependent manner

scientific article published on 29 September 2020

Characterization of In Vivo Function(s) of Members of the Plant Mitochondrial Carrier Family

scientific article published on 24 August 2020

Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae

scientific article

Characterization of maize leaf pyruvate orthophosphate dikinase using high throughput sequencing

scientific article published on 10 July 2018

Characterization of the branched-chain amino acid aminotransferase enzyme family in tomato

scientific article

Characterization of ubiquitin ligase SlATL31 and proteomic analysis of 14-3-3 targets in tomato fruit tissue (Solanum lycopersicum L.).

scientific article published on 22 April 2016

Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development

scientific article published on 11 October 2019

Chloroplast translational regulation uncovers nonessential photosynthesis genes as key players in plant cold acclimation

scientific article published on 15 February 2022

Chloroplast-localized 6-phosphogluconate dehydrogenase is critical for maize endosperm starch accumulation

scientific article published on 25 March 2013

Citrulline metabolism in plants

scientific article

Co-Regulation of Clustered and Neo-Functionalized Genes in Plant-Specialized Metabolism

scientific article published on 13 May 2020

Co-expression and co-responses: within and beyond transcription

scientific article

Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana

scientific article

Combined drought and virus infection trigger aspects of respiratory metabolism related to grapevine physiological responses

article

Combined transcript and metabolite profiling of Arabidopsis grown under widely variant growth conditions facilitates the identification of novel metabolite-mediated regulation of gene expression

scientific article published on 26 February 2010

Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism

scientific article published on 28 April 2006

Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development.

scientific article

Combined transcriptomics and metabolomics of Arabidopsis thaliana seedlings exposed to exogenous GABA suggest its role in plants is predominantly metabolic

scientific article published on 19 February 2014

Combining Quantitative Genetics Approaches with Regulatory Network Analysis to Dissect the Complex Metabolism of the Maize Kernel.

scientific article

Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function

scientific article published on 10 June 2010

Commonalities and differences in plants deficient in autophagy and alternative pathways of respiration on response to extended darkness

scientific article

Comparative analyses of C₄ and C₃ photosynthesis in developing leaves of maize and rice

scientific article published on 12 October 2014

Comparative metabolic profiling of Haberlea rhodopensis, Thellungiella halophyla, and Arabidopsis thaliana exposed to low temperature

scientific article

Comparative metabolite profiling of two switchgrass ecotypes reveals differences in drought stress responses and rhizosheath weight

scientific article published on 05 July 2019

Comparative proteomic and metabolomic studies between Prunus persica genotypes resistant and susceptible to Taphrina deformans suggest a molecular basis of resistance

scientific article published on 17 June 2017

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

scientific article published on 26 June 2013

Complete Mitochondrial Complex I Deficiency Induces an Up-Regulation of Respiratory Fluxes That Is Abolished by Traces of Functional Complex I.

scientific article

Complex assembly and metabolic profiling of Arabidopsis thaliana plants overexpressing vitamin B₆ biosynthesis proteins

scientific article published on 30 July 2010

Comprehensive Metabolomics Studies of Plant Developmental Senescence

scientific article published in January 2018

Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis

scientific article published on 21 May 2013

Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement

scientific article published on 12 March 2006

Computational approaches that aid annotation in metabolomics

scientific article published in 2022

Consequences of induced brassinosteroid deficiency in Arabidopsis leaves

scientific article

Conservation and diversification of flavonoid metabolism in the plant kingdom

scientific article published on 15 May 2020

Conserved changes in the dynamics of metabolic processes during fruit development and ripening across species

scientific article published on 15 November 2013

Construction and applications of a B vitamin genetic resource for investigation of vitamin-dependent metabolism in maize

scientific article published on 03 November 2019

Control of stomatal aperture: a renaissance of the old guard

scientific article

Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf

scientific article

Coordinating Sulfur Pools under Sulfate Deprivation

scientific article published on 13 August 2020

Correction: Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation

scientific article published on 29 March 2017

Correction: Trichoderma-Plant Root Colonization: Escaping Early Plant Defense Responses and Activation of the Antioxidant Machinery for Saline Stress Tolerance

scientific article published on 30 April 2013

Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays

scientific article

Corrigendum to: Posttranslational Modification of the NADP-Malic Enzyme Involved in C4 Photosynthesis Modulates the Enzymatic Activity during the Day

scientific article published on 24 October 2021

Corrigendum: Arabidopsis Fructokinases Are Important for Seed Oil Accumulation and Vascular Development

scientific article published on 6 March 2017

Corrigendum: Autophagy-related approaches for improving nutrient use efficiency and crop yield protection

scientific article published on 01 May 2018

Corrigendum: Current understanding of the pathways of flavonoid biosynthesis in model and crop plants

scientific article published on 01 August 2018

Corrigendum: Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle

scientific article published on 24 July 2017

Coupling Radiotracer Experiments with Chemical Fractionation for the Estimation of Respiratory Fluxes

scientific article published in January 2017

Coupling virus-induced gene silencing to exogenous green fluorescence protein expression provides a highly efficient system for functional genomics in Arabidopsis and across all stages of tomato fruit development

scientific article published on 29 April 2011

Crop breeding - From experience-based selection to precision design

scientific article published on 02 November 2020

Crop metabolomics: from diagnostics to assisted breeding

scientific article published on 03 November 2018

CsbZIP1-CsMYB12 mediates the production of bitter-tasting flavonols in tea plants (Camellia sinensis) through a coordinated activator-repressor network

scientific article published on 01 May 2021

Cucumber ovaries inhibited by dominant fruit express a dynamic developmental program, distinct from either senescence-determined or fruit-setting ovaries

scientific article published on 08 September 2018

Current understanding of the pathways of flavonoid biosynthesis in model and crop plants

scientific article

Cytochrome respiration pathway and sulphur metabolism sustain stress tolerance to low temperature in the Antarctic species Colobanthus quitensis

scientific article published on 21 October 2019

Cytoskeleton Architecture Regulates Glycolysis Coupling Cellular Metabolism to Mechanical Cues

scientific article published on 25 April 2020

Cytosolic pyruvate,orthophosphate dikinase functions in nitrogen remobilization during leaf senescence and limits individual seed growth and nitrogen content

scientific article published on 24 February 2010

DELLA-interacting SWI3C core subunit of switch/sucrose nonfermenting chromatin remodeling complex modulates gibberellin responses and hormonal cross talk in Arabidopsis

scientific article published on 26 July 2013

De Novo Amino Acid Biosynthesis in Potato Tubers Is Regulated by Sucrose Levels ⬇️

scientific article published on September 25, 2003

De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing.

scientific article published on 12 October 2017

De Novo Domestication: An Alternative Route toward New Crops for the Future

scientific article published on 15 April 2019

Dealing with the sulfur part of cysteine: four enzymatic steps degrade l-cysteine to pyruvate and thiosulfate in Arabidopsis mitochondria

scientific article published on 3 June 2016

Deciphering the metabolic pathways influencing heat and cold responses during post-harvest physiology of peach fruit

article

Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development

scientific article published on 25 September 2009

Decoding altitude-activated regulatory mechanisms occurring during apple peel ripening

scientific article published on 01 August 2020

Decoding indigo: the chromosome-scale genome of Strobilanthes cusia a highly pigmented plant important to diverse ethnic cultures in Asia

scientific article published on 01 November 2020

Decrease in manganese superoxide dismutase leads to reduced root growth and affects tricarboxylic acid cycle flux and mitochondrial redox homeostasis

scientific article published on 12 March 2008

Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean

scientific article

Decreased expression of cytosolic pyruvate kinase in potato tubers leads to a decline in pyruvate resulting in an in vivo repression of the alternative oxidase

scientific article published in October 2008

Decreased expression of plastidial adenylate kinase in potato tubers results in an enhanced rate of respiration and a stimulation of starch synthesis that is attributable to post-translational redox-activation of ADP-glucose pyrophosphorylase

scientific article published on 4 February 2008

Decreased mitochondrial activities of malate dehydrogenase and fumarase in tomato lead to altered root growth and architecture via diverse mechanisms

scientific article published on 21 November 2008

Decreasing the mitochondrial synthesis of malate in potato tubers does not affect plastidial starch synthesis, suggesting that the physiological regulation of ADPglucose pyrophosphorylase is context dependent

article by Marek Szecówka et al published December 2012 in Plant Physiology

Deficiency in the Phosphorylated Pathway of Serine Biosynthesis Perturbs Sulfur Assimilation

scientific article published on 20 February 2019

Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth

scientific article

Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function

article

Defining the convergence of ethylene and auxin signaling in tomato

scientific article published on 01 July 2018

Degrading to inhibit: a role for Phytochrome Interacting Factors in determining hypocotyl growth under UV-B

scientific article published on 01 February 2020

Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit

article

Developmental analysis of carbohydrate metabolism in tomato (Lycopersicon esculentum cv. Micro-Tom) fruits

scientific article published in February 2004

Developmental stage specificity and the role of mitochondrial metabolism in the response of Arabidopsis leaves to prolonged mild osmotic stress

scientific article published on 11 November 2009

Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age

scientific article published on 28 July 2020

Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits

scientific article published on 30 September 2016

Differential lipidome remodeling during postharvest of peach varieties with different susceptibility to chilling injury

scientific article

Differential metabolic and coexpression networks of plant metabolism

article

Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance.

scientific article published on 7 December 2017

Discriminating the Function(s) of Guard Cell ALMT Channels

scientific article published on 21 June 2018

Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the Arabidopsis rcd1 mutant

scientific article published on 04 May 2020

Dissecting the subcellular compartmentation of proteins and metabolites in arabidopsis leaves using non-aqueous fractionation

scientific article published on 27 May 2014

Dissection of flag leaf metabolic shifts and their relationship with those occurring simultaneously in developing seed by application of non-targeted metabolomics

scientific article published on 24 January 2020

Dissection of the domestication-shaped genetic architecture of lettuce primary metabolism

scientific article published on 09 August 2020

Diurnal changes of polysome loading track sucrose content in the rosette of wild-type arabidopsis and the starchless pgm mutant

scientific article

Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA

scientific article published on 19 December 2020

Does the alternative respiratory pathway offer protection against the adverse effects resulting from climate change?

scientific article published on 01 January 2020

Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana

scientific article

Double knockout mutants of Arabidopsis grown under normal conditions reveal that the plastidial phosphorylase isozyme participates in transitory starch metabolism

scientific article published on 3 December 2013

Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants

scientific article published on 29 September 2016

Down-regulation of a Mitochondrial NAD+ Transporter (NDT2) Alters Seed Production and Germination in Arabidopsis

scientific article published on 17 February 2020

Down-regulation of a single auxin efflux transport protein in tomato induces precocious fruit development

scientific article

Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom

scientific article published on 22 November 2018

Downregulation of the δ-subunit reduces mitochondrial ATP synthase levels, alters respiration, and restricts growth and gametophyte development in Arabidopsis

scientific article

Dynamic plastid redox signals integrate gene expression and metabolism to induce distinct metabolic states in photosynthetic acclimation in Arabidopsis

scientific article published on 08 September 2009

Eating Away at ROS to Regulate Stomatal Opening

scientific article published on 10 January 2020

Ectopic expression of snapdragon transcription factors facilitates the identification of genes encoding enzymes of anthocyanin decoration in tomato.

scientific article

Editorial Overview ? Computational Approaches in Aid of Advancing Understanding in Plant Physiology ⬇️

scientific article published on November 25, 2011

Editorial overview: Evolution of metabolic diversity

scientific article published on 01 June 2020

Editorial overview: Plant synthetic and systems biology

scientific article published on 12 October 2017

Engineering central metabolism - a grand challenge for plant biologists

scientific article published on 22 December 2016

Engineering central metabolism in crop species: learning the system

scientific article

Enhanced Photosynthesis and Growth in atquac1 Knockout Mutants Are Due to Altered Organic Acid Accumulation and an Increase in Both Stomatal and Mesophyll Conductance.

scientific article published on 5 November 2015

Enhanced levels of vitamin B(6) increase aerial organ size and positively affect stress tolerance in Arabidopsis

scientific article published in March 2011

Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants

scientific article published on 21 January 2005

Enhancement of vitamin B6 levels in rice expressing Arabidopsis vitamin B6 biosynthesis de novo genes

scientific article published on 11 July 2019

Enhancing vacuolar sucrose cleavage within the developing potato tuber has only minor effects on metabolism

scientific article published on 22 December 2005

Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii

scientific article published on 24 March 2010

Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells. ⬇️

scientific article published in September 2003

Erratum: Corrigendum: Gas chromatography mass spectrometry–based metabolite profiling in plants

article

Establishment of a photoautotrophic cell suspension culture of Arabidopsis thaliana for photosynthetic, metabolic, and signaling studies

scientific article published on March 2012

Ethylene is involved in strawberry fruit ripening in an organ-specific manner

scientific article published on 5 October 2013

Evidence of drought memory in Dipteryx alata indicates differential acclimation of plants to savanna conditions

scientific article published on 05 October 2020

Evolution and functional implications of the tricarboxylic acid cycle as revealed by phylogenetic analysis

scientific article

Evolution and metabolic significance of the urea cycle in photosynthetic diatoms

scientific article

Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom

scientific article published on 07 October 2019

Evolution of a complex locus for terpene biosynthesis in solanum

scientific article published on 11 June 2013

Evolution, structure and function of mitochondrial carriers: a review with new insights

scientific article published on April 2011

Evolution: An Early Role for Flavonoids in Defense against Oomycete Infection

scientific article published on 01 July 2019

Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels

scientific article published on 05 April 2016

Exploiting the natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex

scientific article published on 16 April 2020

Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach

scientific article published on 24 October 2019

Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicum chinense accessions

scientific article

Exploring priming responses involved in peach fruit acclimation to cold stress.

scientific article published on 12 September 2017

Exploring the Diversity of Plant Metabolism

article

Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots

scientific article published on 27 January 2020

Expression of a bacterial xylose isomerase in potato tubers results in an altered hexose composition and a consequent induction of metabolism

scientific article

Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis

scientific article published in July 2004

Expression of an Escherichia coli phosphoglucomutase in potato (Solanum tuberosum L.) results in minor changes in tuber metabolism and a considerable delay in tuber sprouting

scientific article

Extended darkness induces internal turnover of glucosinolates in Arabidopsis thaliana leaves

scientific article published in PLoS ONE

Extensive Variations in Diurnal Growth Patterns and Metabolism Among spp. Strains

scientific article published on 12 February 2019

FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants.

scientific article published on 11 January 2016

Finding Noemi: The Transcription Factor Mutations Underlying Trait Differentiation Amongst Citrus

scientific article published on 18 March 2019

Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana

scientific article published on 23 September 2016

Floral Metabolism of Sugars and Amino Acids: Implications for Pollinators' Preferences and Seed and Fruit Set.

scientific article published on 6 October 2017

Flowers and climate change: a metabolic perspective

scientific article published on 01 July 2019

Flux an important, but neglected, component of functional genomics

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Flux balance analysis of metabolism during growth by osmotic cell expansion and its application to tomato fruits

scientific article published on 27 January 2020

Flux profiling of photosynthetic carbon metabolism in intact plants

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From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web-resources for mass spectral plant metabolomics

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From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions

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From models to crop species: caveats and solutions for translational metabolomics

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From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle

scientific article published on 7 March 2007

Fruit carbohydrate metabolism in an introgression line of tomato with increased fruit soluble solids

scientific article published on 2 February 2005

Full-Length Transcript-Based Proteogenomics of Rice Improves Its Genome and Proteome Annotation

scientific article published on 19 December 2019

Fumarate: Multiple functions of a simple metabolite

scientific article published on 26 March 2011

Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo-reduplication for fruit growth in tomato.

scientific article published on 4 March 2010

Functional analysis of the essential bifunctional tobacco enzyme 3-dehydroquinate dehydratase/shikimate dehydrogenase in transgenic tobacco plants

scientific article published on 26 April 2007

Functional characterization and organ distribution of three mitochondrial ATP-Mg/Pi carriers in Arabidopsis thaliana

scientific article published on 02 July 2015

Functional characterization of the plastidial 3-phosphoglycerate dehydrogenase family in Arabidopsis

scientific article published on 20 September 2013

GC-MS libraries for the rapid identification of metabolites in complex biological samples

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GDP-D-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato.

scientific article published on 8 July 2009

GLYCOLATE OXIDASE3, a Glycolate Oxidase Homolog of Yeast l-Lactate Cytochrome c Oxidoreductase, Supports l-Lactate Oxidation in Roots of Arabidopsis.

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GMD@CSB.DB: the Golm Metabolome Database

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Gas Chromatography-Mass Spectrometry-Based 13C-Labeling Studies in Plant Metabolomics

scientific article published on 01 January 2018

Gas chromatography mass spectrometry–based metabolite profiling in plants

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Gas-Chromatography Mass-Spectrometry (GC-MS) Based Metabolite Profiling Reveals Mannitol as a Major Storage Carbohydrate in the Coccolithophorid Alga Emiliania huxleyi

scientific article published on 11 March 2013

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population.

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Genetic and metabolic effects of ripening mutations and vine detachment on tomato fruit quality

scientific article published on 11 June 2019

Genetic dissection of vitamin E biosynthesis in tomato.

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Genetic diversity of strawberry germplasm using metabolomic biomarkers

scientific article published in Scientific Reports

Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties

scientific article published on 24 July 2020

Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits

scientific article published in 2014

Genome-enabled plant metabolomics

scientific article published on 13 April 2014

Genome-wide Dissection of Co-selected UV-B Responsive Pathways in the UV-B Adaptation of Qingke

scientific article published on 26 October 2019

Genome-wide association study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation

scientific article published in 2023

Genomic analysis of wild tomato introgressions determining metabolism- and yield-associated traits

scientific article (publication date: April 2010)

Genomics-based strategies for the use of natural variation in the improvement of crop metabolism

scientific article published on 05 June 2015

Getting to grips with the plant metabolic network

scientific article published on January 2008

Gibberellin biosynthesis and signalling during development of the strawberry receptacle.

scientific article published on 28 March 2011

Global analysis of the role of autophagy in cellular metabolism and energy homeostasis in Arabidopsis seedlings under carbon starvation

scientific article published on 3 February 2015

Global mapping of protein-metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity

scientific article published on 10 February 2021

Glutaredoxin GRXS17 Associates with the Cytosolic Iron-Sulfur Cluster Assembly Pathway.

scientific article published on 8 August 2016

Glycine decarboxylase controls photosynthesis and plant growth

scientific article published on 11 September 2012

Glycolysis and the tricarboxylic acid cycle are linked by alanine aminotransferase during hypoxia induced by waterlogging of Lotus japonicus

scientific article published on 20 January 2010

Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling

scientific article published on 2 November 2007

Grand Challenges in Plant Systems Biology: Closing the Circle(s) ⬇️

scientific article published on February 22, 2012

Growth rate correlates negatively with protein turnover in Arabidopsis accessions

scientific article published on 17 April 2017

Guard cell-specific upregulation of sucrose synthase 3 reveals that the role of sucrose in stomatal function is primarily energetic

scientific article published on 15 October 2015

Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance

scientific article published on 01 January 2018

Haplotype-resolved sweet potato genome traces back its hexaploidization history

scientific article published on 21 August 2017

Heard it through the grapevine? ABA and sugar cross-talk: the ASR story

scientific article published on February 2004

Herbivore-induced changes in tomato (Solanum lycopersicum) primary metabolism: a whole plant perspective

scientific article published on 10 December 2011

Heterologous expression of AtPAP2 in transgenic potato influences carbon metabolism and tuber development

scientific article published on 27 August 2014

Heterologous expression of a ketohexokinase in potato plants leads to inhibited rates of photosynthesis, severe growth retardation and abnormal leaf development

scientific article

High serine:glyoxylate aminotransferase activity lowers leaf daytime serine levels, inducing the phosphoserine pathway in Arabidopsis

scientific article

High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize

scientific article published on 25 February 2020

High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions

scientific article published on 11 July 2011

High-energy-level metabolism and transport occur at the transition from closed to open flowers

scientific article published in 2022

High-to-low CO2 acclimation reveals plasticity of the photorespiratory pathway and indicates regulatory links to cellular metabolism of Arabidopsis

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Highway or byway: the metabolic role of the GABA shunt in plants

scientific article published on 21 December 2007

How do vascular plants perform photosynthesis in extreme environments? An integrative ecophysiological and biochemical story

scientific article published on 21 February 2020

How do wheat plants cope with Pyricularia oryzae infection? A physiological and metabolic approach

scientific article published on 16 July 2020

How fruit ripening is ENCODEd

scientific article published on 01 October 2018

Hybrid embryos of Vicia faba develop enhanced sink strength, which is established during early development

scientific article published on 14 January 2011

Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato

scientific article published in November 2005

Identification and characterization of ADNT1, a novel mitochondrial adenine nucleotide transporter from Arabidopsis

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Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds ⬇️

scientific article published on 15 March 2019

Identification and mode of inheritance of quantitative trait loci for secondary metabolite abundance in tomato

scientific article published on 13 March 2015

Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development

scientific article published on 10 February 2016

Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL.

scientific article published on 9 November 2016

Identification of a novel heteroglycan-interacting protein, HIP 1.3, from Arabidopsis thaliana

scientific article published on 17 November 2010

Identification of candidate genes for phenolics accumulation in tomato fruit

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Identification of enzyme activity quantitative trait loci in a Solanum lycopersicum x Solanum pennellii introgression line population

scientific article published on 2 September 2011

Identification of genes in the phenylalanine metabolic pathway by ectopic expression of a MYB transcription factor in tomato fruit

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Identification of quantitative trait loci and candidate genes for primary metabolite content in strawberry fruit

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Identification of the 2-hydroxyglutarate and isovaleryl-CoA dehydrogenases as alternative electron donors linking lysine catabolism to the electron transport chain of Arabidopsis mitochondria

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Identification of the Elusive Chloroplast Ascorbate Transporter Extends the Substrate Specificity of the PHT Family

scientific article published on 18 February 2015

Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions

scientific article published in 2013

Impacts of high ATP supply from chloroplasts and mitochondria on the leaf metabolism of Arabidopsis thaliana

scientific article

Impaired Cyclic Electron Flow around Photosystem I Disturbs High-Light Respiratory Metabolism

scientific article published on 19 October 2016

Impaired Malate and Fumarate Accumulation Due to the Mutation of the Tonoplast Dicarboxylate Transporter Has Little Effects on Stomatal Behavior

scientific article published on 12 September 2017

Improvements to define mitochondrial metabolomics using nonaqueous fractionation

scientific article published in January 2015

In field-grown coffee trees source-sink manipulation alters photosynthetic rates, independently of carbon metabolism, via alterations in stomatal function

scientific article published on 05 February 2008

In high-light-acclimated coffee plants the metabolic machinery is adjusted to avoid oxidative stress rather than to benefit from extra light enhancement in photosynthetic yield

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In plants the alc gene expression system responds more rapidly following induction with acetaldehyde than with ethanol

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In vivo detection of protein cysteine sulfenylation in plastids

scientific article published on 18 December 2018

Increased antioxidant capacity in tomato by ectopic expression of the strawberryD-galacturonate reductasegene

scientific article published on 18 September 2014

Increasing amino acid supply in pea embryos reveals specific interactions of N and C metabolism, and highlights the importance of mitochondrial metabolism

scientific article published on 20 May 2008

Induction of the AOX1D isoform of alternative oxidase in A. thaliana T-DNA insertion lines lacking isoform AOX1A is insufficient to optimize photosynthesis when treated with antimycin A.

scientific article published on 21 January 2009

Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat

scientific article published on 13 December 2017

Inhibition of 2-oxoglutarate dehydrogenase in potato tuber suggests the enzyme is limiting for respiration and confirms its importance in nitrogen assimilation,.

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Inhibition of TOR Represses Nutrient Consumption, Which Improves Greening after Extended Periods of Etiolation

scientific article published on 26 July 2018

Inhibition of aconitase in citrus fruit callus results in a metabolic shift towards amino acid biosynthesis

scientific article published on 28 April 2011

Inhibition of chloroplastic fructose 1,6-bisphosphatase in tomato fruits leads to decreased fruit size, but only small changes in carbohydrate metabolism

scientific article published on 2 April 2004

Inhibition of de novo pyrimidine synthesis in growing potato tubers leads to a compensatory stimulation of the pyrimidine salvage pathway and a subsequent increase in biosynthetic performance

scientific article published on 10 June 2005

Inhibition of plastid PPase and NTT leads to major changes in starch and tuber formation in potato

scientific article published on 01 April 2018

Insights into ABA-mediated regulation of guard cell primary metabolism revealed by systems biology approaches

scientific article published on 14 November 2018

Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior

scientific article published on 27 October 2006

Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis

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Integrated proteome and metabolite analysis of the de-etiolation process in plastids from rice (Oryza sativa L.).

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Integrated proteomic and metabolomic analysis suggests high rates of glycolysis are likely required to support high carotenoid accumulation in banana pulp

scientific article published on 15 June 2019

Integrated transcriptomic and metabolomic analysis shows that disturbances in metabolism of tumor cells contribute to poor survival of RCC patients.

scientific article published on 21 December 2016

Integrating multi-omics data for crop improvement

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Integrating multiomics data accelerates elucidation of plant primary and secondary metabolic pathways

scientific article published in 2023

Integrating profiling data: using linear correlation to reveal coregulation of transcript and metabolites

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Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower

scientific article published on July 2015

Integration of genome-scale modeling and transcript profiling reveals metabolic pathways underlying light and temperature acclimation in Arabidopsis

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Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.).

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Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation

scientific article published on 14 September 2015

Integrative comparative analyses of transcript and metabolite profiles from pepper and tomato ripening and development stages uncovers species-specific patterns of network regulatory behavior

scientific article published on 8 June 2012

Integrative field scale phenotyping for investigating metabolic components of water stress within a vineyard

scientific article published on 30 October 2017

Interaction of Nitric Oxide with the Components of Plant Mitochondrial Electron Transport Chain

scientific article published on 24 March 2018

Interorganelle Communication: Peroxisomal MALATE DEHYDROGENASE2 Connects Lipid Catabolism to Photosynthesis through Redox Coupling in Chlamydomonas

scientific article published on 11 July 2018

Interview with Alisdair R. Fernie

scientific article published on 4 February 2014

Intra- and extra-cellular excretion of carboxylates

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Intracellular and cell-to-apoplast compartmentation of carbohydrate metabolism

scientific article published on 22 May 2015

Investigating mixotrophic metabolism in the model diatom Phaeodactylum tricornutum.

scientific article published on September 2017

Investigating the Role of the Photorespiratory Pathway in Non-photosynthetic Tissues

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Involvement of the Hexose Transporter Gene LeHT1 and of Sugars in Resistance of Tomato to Tomato Yellow Leaf Curl Virus ⬇️

scientific article published on February 21, 2013

Is there a metabolic requirement for photorespiratory enzyme activities in heterotrophic tissues?

scientific article published on 30 August 2013

JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in Arabidopsis

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Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography-mass spectrometry following incubation in (13)C labelled isotopes

scientific article

Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida

scientific article published in Nature Communications

Kresoxim-methyl primes Medicago truncatula plants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment

scientific article published on 27 December 2015

Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis.

scientific article published on 25 May 2016

Large-scale metabolite quantitative trait locus analysis provides new insights for high-quality maize improvement

scientific article published on 16 April 2019

Leveraging Natural Variance towards Enhanced Understanding of Phytochemical Sunscreens

scientific article published on 4 February 2017

Leveraging metabolomics for functional investigations in sequenced marine diatoms

scientific article published on 30 March 2012

Light-responsive metabolite and transcript levels are maintained following a dark-adaptation period in leaves of Arabidopsis thaliana ⬇️

scientific article published on 30 April 2012

Lignin, mitochondrial family, and photorespiratory transporter classification as case studies in using co-expression, co-response, and protein locations to aid in identifying transport functions

scientific article published on 17 March 2014

Lipidomic and transcriptomic analysis reveals reallocation of carbon flux from cuticular wax into plastid membrane lipids in a glossy "Newhall" navel orange mutant

scientific article published on 01 April 2020

Lipoate-Protein Ligase and Octanoyltransferase Are Essential for Protein Lipoylation in Mitochondria of Arabidopsis

scientific article published on 28 May 2014

Liquid chromatography high-resolution mass spectrometry for fatty acid profiling

scientific article

Location, location, location--no more! The unravelling of chromatin remodeling regulatory aspects of plant metabolic gene clusters

scientific article published on 01 January 2015

Long-Term Cd Exposure Alters the Metabolite Profile in Stem Tissue of <i>Medicago sativa</i>

scientific article published on 17 December 2020

Long-distance stress and developmental signals associated with abscisic acid signaling in environmental responses

scientific article published on 29 November 2020

Low-temperature tolerance of the Antarctic species Deschampsia antarctica: A complex metabolic response associated with nutrient remobilization

scientific article published on 03 February 2020

MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways

scientific article published on 26 August 2013

Making sense of the complex role of the mitochondria in mediating the plant touch response

scientific article published on 01 February 2019

Malate plays a crucial role in starch metabolism, ripening, and soluble solid content of tomato fruit and affects postharvest softening.

scientific article

Malate. Jack of all trades or master of a few?

scientific article published on 25 May 2009

Manipulating photorespiration to increase plant productivity: recent advances and perspectives for crop improvement

scientific article published on 7 March 2016

Manipulation of L-ascorbic acid biosynthesis pathways in Solanum lycopersicum: elevated GDP-mannose pyrophosphorylase activity enhances L-ascorbate levels in red fruit

scientific article published on 7 October 2011

Manipulation of β-carotene levels in tomato fruits results in increased ABA content and extended shelf life

scientific article published on 24 December 2019

Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions

scientific article published on 30 August 2017

Mass Spectrometry-Based Untargeted Plant Metabolomics

scientific article published on 01 December 2019

Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

scientific article published in 2021

Measurement of Tricarboxylic Acid Cycle Enzyme Activities in Plants

scientific article published on 01 January 2017

Measurements of Electron Partitioning Between Cytochrome and Alternative Oxidase Pathways in Plant Tissues

scientific article published in January 2017

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

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MetNet: Metabolite Network Prediction from High-Resolution Mass Spectrometry Data in R Aiding Metabolite Annotation

scientific article published on 07 January 2019

Metabolic Roles of Plant Mitochondrial Carriers

scientific article published on 08 July 2020

Metabolic alterations triggered by silicon nutrition: is there a signaling role for silicon?

scientific article published on 26 October 2012

Metabolic analyses of interspecific tomato recombinant inbred lines for fruit quality improvement

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Metabolic analysis of kiwifruit (Actinidia deliciosa) berries from extreme genotypes reveals hallmarks for fruit starch metabolism

scientific article published on 21 September 2013

Metabolic and Phenotypic Responses of Greenhouse-Grown Maize Hybrids to Experimentally Controlled Drought Stress ⬇️

scientific article published on December 15, 2011

Metabolic and developmental adaptations of growing potato tubers in response to specific manipulations of the adenylate energy status

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Metabolic and miRNA profiling of TMV infected plants reveals biphasic temporal changes

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Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions

scientific article published on 06 October 2010

Metabolic characterization of loci affecting sensory attributes in tomato allows an assessment of the influence of the levels of primary metabolites and volatile organic contents

scientific article published on 03 April 2009

Metabolic control and regulation of the tricarboxylic acid cycle in photosynthetic and heterotrophic plant tissues

scientific article published on 20 June 2011

Metabolic control exerted by the 2-oxoglutarate dehydrogenase reaction: a cross-kingdom comparison of the crossroad between energy production and nitrogen assimilation

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Metabolic control of redox and redox control of metabolism in plants

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Metabolic diversity in tuber tissues of native Chiloé potatoes and commercial cultivars of Solanum tuberosum ssp. tuberosum L

scientific article published on 04 October 2018

Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana

scientific article published on 28 March 2014

Metabolic engineering of tomato fruit organic acid content guided by biochemical analysis of an introgression line

scientific article published on 19 November 2012

Metabolic fluxes in an illuminated Arabidopsis rosette

scientific article published on 26 February 2013

Metabolic priming by a secreted fungal effector

scientific article published in Nature

Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield

scientific article published on 17 January 2020

Metabolic profiles of sunflower genotypes with contrasting response to Sclerotinia sclerotiorum infection

scientific article published on 21 October 2009

Metabolic profiling during peach fruit development and ripening reveals the metabolic networks that underpin each developmental stage

scientific article published on 20 October 2011

Metabolic profiling of a mapping population exposes new insights in the regulation of seed metabolism and seed, fruit, and plant relations

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Metabolic profiling of a range of peach fruit varieties reveals high metabolic diversity and commonalities and differences during ripening

scientific article published on 16 June 2015

Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex

scientific article published on 13 December 2004

Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development

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Metabolic profiling reveals altered nitrogen nutrient regimes have diverse effects on the metabolism of hydroponically-grown tomato (Solanum lycopersicum) plants

scientific article published on 13 December 2004

Metabolic reconfiguration of strawberry physiology in response to postharvest practices

scientific article published on 03 April 2020

Metabolic recovery of Arabidopsis thaliana roots following cessation of oxidative stress ⬇️

scientific article published on March 12, 2011

Metabolic regulation of pathways of carbohydrate oxidation in potato (Solanum tuberosum) tubers

scientific article published on 7 April 2008

Metabolic regulation underlying tomato fruit development

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Metabolic responses of Arabidopsis thaliana roots and leaves to sublethal cadmium exposure are differentially influenced by ALTERNATIVE OXIDASE1a

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Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics ⬇️

scientific article published on 27 May 2014

Metabolism within the specialized guard cells of plants

scientific article published on 6 October 2017

Metabolite Profiles of Maize Leaves in Drought, Heat, and Combined Stress Field Trials Reveal the Relationship between Metabolism and Grain Yield.

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Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation

scientific article published on 7 November 2016

Metabolite profiles reveal interspecific variation in operation of the Calvin-Benson cycle in both C4 and C3 plants

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Metabolite profiling in plant biology: platforms and destinations

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Metabolite-based genome-wide association study enables dissection of the flavonoid decoration pathway of wheat kernels

scientific article published on 12 January 2020

Metabolome Analysis of Multi-Connected Biparental Chromosome Segment Substitution Line Populations

scientific article published on 23 August 2018

Metabolome Profiling Supports the Key Role of the Spike in Wheat Yield Performance

scientific article published on 21 April 2020

Metabolome and Lipidome Profiles of × Twig Tissues During Annual Growth Show Phospholipid-Linked Storage and Mobilization of C, N, and S

scientific article published in 2018

Metabolomic Analysis of Natural Variation in Arabidopsis

scientific article published on 01 January 2021

Metabolomic markers and physiological adaptations for high phosphate utilization efficiency in rice

scientific article published on 03 May 2020

Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships

scientific article published on 11 April 2015

Metabolomic selection–based machine learning improves fruit taste prediction

scientific article published in 2022

Metabolomics 20 years on: what have we learned and what hurdles remain?

scientific article published on 01 June 2018

Metabolomics analysis and metabolite-agronomic trait associations using kernels of wheat (Triticum aestivum) recombinant inbred lines

scientific article published on 19 February 2020

Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis

scientific article published on 15 January 2020

Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light

scientific article published on 20 May 2011

Metabolomics should be deployed in the identification and characterization of gene-edited crops

scientific article published on 10 January 2020

Metabolomics-Inspired Insight into Developmental, Environmental and Genetic Aspects of Tomato Fruit Chemical Composition and Quality

scientific article published on 29 July 2015

Metabolomics-assisted breeding: a viable option for crop improvement?

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Metabolomics-assisted refinement of the pathways of steroidal glycoalkaloid biosynthesis in the tomato clade

scientific article published in September 2014

MicroRNA-Mediated Metabolic Reprograming in Renal Cancer

scientific article published on 20 November 2019

MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle

scientific article published on 16 June 2020

Mild reductions in cytosolic NADP-dependent isocitrate dehydrogenase activity result in lower amino acid contents and pigmentation without impacting growth

scientific article published on 16 May 2010

Mild reductions in mitochondrial NAD-dependent isocitrate dehydrogenase activity result in altered nitrate assimilation and pigmentation but do not impact growth

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Mild reductions in mitochondrial citrate synthase activity result in a compromised nitrate assimilation and reduced leaf pigmentation but have no effect on photosynthetic performance or growth

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Mitochondrial Dihydrolipoyl Dehydrogenase Activity Shapes Photosynthesis and Photorespiration of Arabidopsis thaliana

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Mitochondrial uncoupling protein is required for efficient photosynthesis

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Mobile Transposable Elements Shape Plant Genome Diversity

scientific article published on 28 August 2020

Mode of inheritance of primary metabolic traits in tomato

scientific article published on 25 March 2008

Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways

scientific article published on 12 July 2020

Model-based confirmation of alternative substrates of mitochondrial electron transport chain

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Modulation of auxin signalling through DIAGETROPICA and ENTIRE differentially affects tomato plant growth via changes in photosynthetic and mitochondrial metabolism

scientific article published on 03 October 2018

Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism

scientific article published on 12 May 2005

Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant

scientific article published on 22 May 2018

Molecular identification and functional characterization of Arabidopsis thaliana mitochondrial and chloroplastic NAD+ carrier proteins

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Molecular identification of a further branched-chain aminotransferase 7 (BCAT7) in tomato plants

scientific article published on 05 January 2012

Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization

scientific article published in September 2006

Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis.

scientific article published on 21 September 2012

Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes

scientific article published on 22 May 2020

Molecular regulation of fruit ripening

scientific article published on 14 June 2013

Molecular regulation of seed and fruit set.

scientific article published on 08 July 2012

More to NAD+ than meets the eye: A regulator of metabolic pools and gene expression in Arabidopsis

scientific article published on 5 January 2018

Multi-gene metabolic engineering of tomato plants results in increased fruit yield up to 23

scientific article published on 14 October 2020

Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato.

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Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice

scientific article published on 25 October 2021

Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome

scientific article published on 15 January 2019

Multifaceted regulatory function of tomato SlTAF1 in the response to salinity stress

scientific article published on 11 November 2019

Multiomic Analysis Elucidates the Reasons Underlying the Differential Metabolite Accumulation in Citrus Mature Leaves and Fruit Juice Sacs

scientific article published on 08 October 2020

Multiomics-based dissection of citrus flavonoid metabolism using a Citrus reticulata × Poncirus trifoliata population

scientific article published in 2021

Multiple strategies to prevent oxidative stress in Arabidopsis plants lacking the malate valve enzyme NADP-malate dehydrogenase

scientific article published on 3 December 2011

NAD-dependent isocitrate dehydrogenase mutants of Arabidopsis suggest the enzyme is not limiting for nitrogen assimilation

scientific article published on 27 April 2007

NTRC Plays a Crucial Role in Starch Metabolism, Redox Balance, and Tomato Fruit Growth

scientific article published on 16 September 2019

Nano and Micro Unmanned Aerial Vehicles (UAVs): A New Grand Challenge for Precision Agriculture?

scientific article published on 01 March 2020

Natural genetic variation for improving crop quality

scientific article published on 15 February 2006

Natural occurring epialleles determine vitamin E accumulation in tomato fruits

scientific article published on 26 June 2014

Natural products from resurrection plants: potential for medical applications

scientific article published on 26 March 2014

Natural variation in flavonol accumulation in Arabidopsis is determined by the flavonol glucosyltransferase BGLU6.

scientific article published on 29 December 2015

Natural variation in flavonol and anthocyanin metabolism during cold acclimation in Arabidopsis thaliana accessions

scientific article published on 23 April 2015

Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions

scientific article published on 10 August 2010

Network analysis: tackling complex data to study plant metabolism

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Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation

scientific article published on 07 May 2020

Next-generation strategies for understanding and influencing source-sink relations in crop plants

scientific article published on 8 February 2018

Nitrite and nitric oxide are important in the adjustment of primary metabolism during the hypersensitive response in tobacco

scientific article published on 01 August 2019

Non-aqueous fractionation revealed changing subcellular metabolite distribution during apple fruit development

scientific article published on 11 August 2019

Nonsupervised Construction and Application of Mass Spectral and Retention Time Index Libraries From Time-of-Flight Gas Chromatography-Mass Spectrometry Metabolite Profiles

Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles

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Not just a circle: flux modes in the plant TCA cycle

scientific article published on 16 June 2010

OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize

scientific article (publication date: 29 December 2012)

Observability of Plant Metabolic Networks Is Reflected in the Correlation of Metabolic Profiles

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On the Detection and Functional Significance of the Protein-Protein Interactions of Mitochondrial Transport Proteins

scientific article published on 25 July 2020

On the discordance of metabolomics with proteomics and transcriptomics: coping with increasing complexity in logic, chemistry, and network interactions scientific correspondence

scientific article published on 17 January 2012

On the metabolic interactions of (photo)respiration

scientific article published on 30 March 2016

On the natural diversity of phenylacylated-flavonoid and their in planta function under conditions of stress.

scientific article published on 8 September 2017

On the origins of nitric oxide

scientific article published on 23 December 2010

On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality

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On the regulation and function of secondary metabolism during fruit development and ripening

scientific article published on 20 January 2014

On the role of plant mitochondrial metabolism and its impact on photosynthesis in both optimal and sub-optimal growth conditions

scientific article published on 28 February 2013

On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in amino acid metabolism

scientific article published on 15 September 2012

On the role of the tricarboxylic acid cycle in plant productivity

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Opportunities for improving leaf water use efficiency under climate change conditions.

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Orchestration of thiamin biosynthesis and central metabolism by combined action of the thiamin pyrophosphate riboswitch and the circadian clock in Arabidopsis

scientific article published on 22 January 2013

Osmosensitive changes of carbohydrate metabolism in response to cellulose biosynthesis inhibition

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Outstanding questions in flower metabolism

scientific article published on 15 May 2020

Overexpression of the Arabidopsis thaliana signalling peptide TAXIMIN1 affects lateral organ development

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Overexpression of the sucrose transporter SoSUT1 in potato results in alterations in leaf carbon partitioning and in tuber metabolism but has little impact on tuber morphology

scientific article published on 12 February 2003

Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants

scientific article published on 16 December 2016

Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth

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PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters

scientific article published on 4 February 2013

PYRIDOX(AM)INE 5′-PHOSPHATE OXIDASE3 of<i>Arabidopsis thaliana</i>maintains carbon/nitrogen balance in distinct environmental conditions

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PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

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Pan-Genomic Illumination of Tomato Identifies Novel Gene-Trait Interactions

scientific article published on 29 August 2019

Parallel Metabolomic and Transcriptomic Analysis Reveals Key Factors for Quality Improvement of Tea Plants

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Parallel analysis of transcript and metabolic profiles: a new approach in systems biology

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Past accomplishments and future challenges of the multi-omics characterization of leaf growth

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Phenology and foraging bias contribute to sex‐specific foraging patterns in the rare declining butterfly <i>Argynnis idalia idalia</i>

scientific article published in 2023

Phosphoglycerate kinases are co-regulated to adjust metabolism and to optimize growth.

scientific article published on 26 September 2017

Phosphonate analogs of 2-oxoglutarate perturb metabolism and gene expression in illuminated Arabidopsis leaves

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Photometric assay of maltose and maltose-forming enzyme activity by using 4-alpha-glucanotransferase (DPE2) from higher plants

scientific article published on 30 May 2017

Photorespiration Is Crucial for Dynamic Response of Photosynthetic Metabolism and Stomatal Movement to Altered CO2 Availability

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Photorespiration: players, partners and origin

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Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence?

scientific article published on 7 April 2016

Photosynthesis in cells around veins of the C(3) plant Arabidopsis thaliana is important for both the shikimate pathway and leaf senescence as well as contributing to plant fitness

scientific article published on 19 March 2009

Photosynthetic and metabolic acclimation to repeated drought events play key roles in drought tolerance in coffee

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Phytochrome A and B Regulate Primary Metabolism in Arabidopsis Leaves in Response to Light

scientific article published on 9 August 2017

Phytochrome-dependent Temperature Perception Modulates Isoprenoid Metabolism

scientific article published on 14 May 2020

PlaNet: combined sequence and expression comparisons across plant networks derived from seven species

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Plant Mitochondrial Carriers: Molecular Gatekeepers That Help to Regulate Plant Central Carbon Metabolism

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Plant Single-Cell Metabolomics-Challenges and Perspectives

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Plant metabolomics: towards biological function and mechanism

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PlantaSyst: Teaming up for Systems Biology and Biotechnology

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Plastic, fantastic! Phenotypic variance in the transcriptional landscape of the grape berry

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Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations

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Plastidial Glycolytic Glyceraldehyde-3-Phosphate Dehydrogenase Is an Important Determinant in the Carbon and Nitrogen Metabolism of Heterotrophic Cells in Arabidopsis.

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Pleiotropic physiological consequences of feedback-insensitive phenylalanine biosynthesis in Arabidopsis thaliana

scientific article published on September 2010

Pod indehiscence in common bean is associated to the fine regulation of PvMYB26

scientific article published on 28 November 2020

Point mutations that boost aromatic amino acid production and CO<sub>2</sub> assimilation in plants

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Pool size measurements facilitate the determination of fluxes at branching points in non-stationary metabolic flux analysis: the case of Arabidopsis thaliana

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Postharvest changes in LIN5-down-regulated plants suggest a role for sugar deficiency in cuticle metabolism during ripening

scientific article published on 25 June 2017

Posttranslational Modification of the NADP-Malic Enzyme Involved in C4 Photosynthesis Modulates the Enzymatic Activity during the Day

scientific article published on 30 July 2019

Potato hexokinase 2 complements transgenic Arabidopsis plants deficient in hexokinase 1 but does not play a key role in tuber carbohydrate metabolism

scientific article published in July 2002

Predictive metabolic engineering: a goal for systems biology

scientific article published in June 2003

Profiling Primary Metabolites of Tomato Fruit with Gas Chromatography/Mass Spectrometry

scientific article published on 01 January 2012

Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves

scientific article published on 03 March 2005

Profiling of primary metabolites and flavonols in leaves of two table grape varieties collected from semiarid and temperate regions

scientific article published on 17 July 2015

Protein degradation - an alternative respiratory substrate for stressed plants.

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Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle

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Proteogenomic analysis reveals alternative splicing and translation as part of the abscisic acid response in Arabidopsis seedlings.

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Publisher Correction: How fruit ripening is ENCODEd

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Publisher Correction: Tomato multiomics at aPEELing resolution

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Pyrophosphate levels strongly influence ascorbate and starch content in tomato fruit

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Quantifying protein synthesis and degradation in Arabidopsis by dynamic 13CO2 labeling and analysis of enrichment in individual amino acids in their free pools and in protein ⬇️

scientific article published on 25 March 2015

Quantitative Trait Loci Analysis Identifies a Prominent Gene Involved in the Production of Fatty Acid-Derived Flavor Volatiles in Tomato

scientific article published on 28 June 2018

Quantitative trait loci analysis (QTL) of seed specialized metabolites reveals seed-specific flavonols and differential regulation of glycoalkaloid content in tomato

scientific article published on 15 June 2020

RCD1 Coordinates Chloroplastic and Mitochondrial Electron Transfer through Interaction with ANAC Transcription Factors

RNA interference of LIN5 in tomato confirms its role in controlling Brix content, uncovers the influence of sugars on the levels of fruit hormones, and demonstrates the importance of sucrose cleavage for normal fruit development and fertility.

scientific article published on 13 May 2009

RNA interference-mediated repression of sucrose-phosphatase in transgenic potato tubers (Solanum tuberosum) strongly affects the hexose-to-sucrose ratio upon cold storage with only minor effects on total soluble carbohydrate accumulation

scientific article published on 12 November 2007

Rapid Identification of Protein-Protein Interactions in Plants

scientific article published on 01 December 2019

Rapid classification of phenotypic mutants of Arabidopsis via metabolite fingerprinting

scientific article published on 02 February 2007

Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

scientific article published on 3 November 2016

Recommendations for reporting metabolite data

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Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development

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Reconstructing The Gigabase Plant Genome Of Solanum pennellii Using Nanopore Sequencing

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Redox-Regulation of Photorespiration through Mitochondrial Thioredoxin o1

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Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato

scientific article published on 9 October 2003

Reduced expression of succinyl-coenzyme A ligase can be compensated for by up-regulation of the gamma-aminobutyrate shunt in illuminated tomato leaves

scientific article published on 20 September 2007

Reduction of MDHAR activity in cherry tomato suppresses growth and yield and MDHAR activity is correlated with sugar levels under high light

scientific article published on 29 October 2015

Reduction of the cytosolic phosphoglucomutase in Arabidopsis reveals impact on plant growth, seed and root development, and carbohydrate partitioning

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Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution.

scientific article published on 9 November 2015

Regulation of ascorbate biosynthesis in green algae has evolved to enable rapid stress-induced response via the VTC2 gene encoding GDP-l-galactose phosphorylase.

scientific article published on 23 January 2017

Regulation of metabolic networks: understanding metabolic complexity in the systems biology era.

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Regulation of respiration in plants: a role for alternative metabolic pathways

scientific article published on 24 December 2010

Regulation of the mitochondrial tricarboxylic acid cycle

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Regulatory features underlying pollination-dependent and -independent tomato fruit set revealed by transcript and primary metabolite profiling

scientific article published on 12 May 2009

Remote Control of Transpiration via ABA

scientific article published on 23 July 2018

Resolution by recombination: breaking up Solanum pennellii introgressions.

scientific article published on 9 September 2013

Resolving the central metabolism of Arabidopsis guard cells

scientific article published on 16 August 2017

Resolving the role of strigolactone in the early steps of rice axillary bud dormancy

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Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport

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Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences

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Review of Autophagy-related Approaches for Improving Nutrient Use Efficiency and Crop Yield Protection

scientific article published on 21 February 2018

Revisiting the Basal Role of ABA - Roles Outside of Stress

scientific article published on 29 May 2019

Rewiring of the Fruit Metabolome in Tomato Breeding

scientific article published in January 2018

Rice Grain Quality Benchmarking Through Profiling of Volatiles and Metabolites in Grains Using Gas Chromatography Mass Spectrometry

scientific article published on 01 January 2019

Rice endosperm iron biofortification by targeted and synergistic action of nicotianamine synthase and ferritin

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RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

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Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis

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Role of Raf-like kinases in SnRK2 activation and osmotic stress response in plants

scientific article published on 03 December 2020

Roles of sucrose in guard cell regulation

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STOREKEEPER RELATED 1/G-element Binding Protein (STKR1)interacts with protein kinase SnRK1.

scientific article published on 30 November 2017

SWATH-MS-Based Proteomics: Strategies and Applications in Plants

scientific article published on 06 October 2020

Salinity tolerance is related to cyanide-resistant alternative respiration in Medicago truncatula under sudden severe stress.

scientific article published on 15 June 2016

Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis

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Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice

scientific article published on 25 June 2013

Seed desiccation: a bridge between maturation and germination

scientific article published on April 2010

Seeing is believing: the three-way division of labor in the photosynthetic thylakoid membrane

scientific article published on 01 February 2019

Serine acts as a metabolic signal for the transcriptional control of photorespiration-related genes in Arabidopsis

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Shikimate and phenylalanine biosynthesis in the green lineage

scientific article published on 27 March 2013

Silencing of the mitochondrial ascorbate synthesizing enzyme L-galactono-1,4-lactone dehydrogenase affects plant and fruit development in tomato

scientific article published on 5 October 2007

Silencing of the tomato sugar partitioning affecting protein (SPA) modifies sink strength through a shift in leaf sugar metabolism.

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Silicon nutrition increases grain yield, which, in turn, exerts a feed-forward stimulation of photosynthetic rates via enhanced mesophyll conductance and alters primary metabolism in rice

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Simultaneous antagonistic modulation of enzyme activities in transgenic plants through the expression of a chimeric transcript

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Single-Cell Genomics and Epigenomics: Technologies and Applications in Plants

scientific article published on 22 May 2020

SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato

scientific article published on 20 October 2009

Specialized Metabolites of the Flavonol Class Mediate Root Phototropism and Growth.

scientific article published on 11 November 2016

Stable and temporary enzyme complexes and metabolons involved in energy and redox metabolism

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Starch Granule Re-Structuring by Starch Branching Enzyme and Glucan Water Dikinase Modulation Affects Caryopsis Physiology and Metabolism

scientific article published on 18 February 2016

Starch Synthase 4 and Plastidal Phosphorylase Differentially Affect Starch Granule Number and Morphology

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Starch as a major integrator in the regulation of plant growth

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Starch content and yield increase as a result of altering adenylate pools in transgenic plants

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Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana

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Subcellular pyrophosphate metabolism in developing tubers of potato (Solanum tuberosum).

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Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport

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Sucrose breakdown within guard cells provides substrates for glycolysis and glutamine biosynthesis during light-induced stomatal opening

scientific article published on 17 April 2018

Sucrose to starch: a transition in molecular plant physiology

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Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways

scientific article published in January 2006

Sulfur deficiency-induced repressor proteins optimize glucosinolate biosynthesis in plants

scientific article published on 07 October 2016

Suppression of NDA-type alternative mitochondrial NAD(P)H dehydrogenases in arabidopsis thaliana modifies growth and metabolism, but not high light stimulation of mitochondrial electron transport

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Suppression of the external mitochondrial NADPH dehydrogenase, NDB1, in Arabidopsis thaliana affects central metabolism and vegetative growth

scientific article published on 12 August 2013

Synchronization of developmental, molecular and metabolic aspects of source-sink interactions

scientific article published on 10 February 2020

Synthetic conversion of leaf chloroplasts into carotenoid-rich plastids reveals mechanistic basis of natural chromoplast development

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Systemic analysis of inducible target of rapamycin mutants reveal a general metabolic switch controlling growth in Arabidopsis thaliana ⬇️

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Systemic signaling of the plant nitrogen status triggers specific transcriptome responses depending on the nitrogen source in Medicago truncatula

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Systems analysis of metabolic phenotypes: what have we learnt?

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Systems biology of gibberellin induced plant cell growth

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Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions

scientific article published on 27 July 2011

Systems biology: A new CAM era.

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Systems-Based Approaches to Unravel Networks and Individual Elements Involved in Apple Superficial Scald

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T-protein is present in large excess over the other proteins of the glycine cleavage system in leaves of Arabidopsis

scientific article published on 2 September 2017

TIME FOR COFFEE is an essential component in the maintenance of metabolic homeostasis in Arabidopsis thaliana

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Tapping natural variation at functional level reveals allele specific molecular characteristics of potato invertase Pain-1.

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Targeted LC-MS Analysis for Plant Secondary Metabolites

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Targeted enhancement of glutamate-to-γ-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner.

scientific article published on 15 September 2011

Targeting Key Genes to Tailor Old and New Crops for a Greener Agriculture

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Targeting mitochondrial metabolism and machinery as a means to enhance photosynthesis

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Teaching (and learning from) metabolomics: the 2006 PlantMetaNet ETNA Metabolomics Research School

scientific article published in February 2008

Tecia solanivora infestation increases tuber starch accumulation in Pastusa Suprema potatoes

scientific article published on 15 August 2018

Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions

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Temporally regulated expression of a yeast invertase in potato tubers allows dissection of the complex metabolic phenotype obtained following its constitutive expression

scientific article published in September 2004

Temporally resolved GC-MS-based metabolic profiling of herbicide treated plants treated reveals that changes in polar primary metabolites alone can distinguish herbicides of differing mode of action

scientific article published on 13 December 2008

The 2-oxoglutarate/malate translocator mediates amino acid and storage protein biosynthesis in pea embryos

scientific article published on 20 October 2009

The Acetate Pathway Supports Flavonoid and Lipid Biosynthesis in Arabidopsis

scientific article published on 12 November 2019

The Arabidopsis E1 subunit of the 2-oxoglutarate dehydrogenase complex modulates plant growth and seed production

scientific article published on 08 July 2019

The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress

scientific article published on 16 September 2015

The Arabidopsis class II sirtuin is a lysine deacetylase and interacts with mitochondrial energy metabolism

scientific article published on 14 January 2014

The Arabidopsis onset of leaf death5 mutation of quinolinate synthase affects nicotinamide adenine dinucleotide biosynthesis and causes early ageing

scientific article published on 31 October 2008

The COMATOSE ATP-binding cassette transporter is required for full fertility in Arabidopsis ⬇️

scientific article published on 27 April 2007

The Cassava Source-Sink project: Opportunities and challenges for crop improvement by metabolic engineering

scientific article published on 05 June 2020

The Effect of Single and Multiple SERAT Mutants on Serine and Sulfur Metabolism.

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The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions

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The Genetics of Plant Metabolism

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The INCREASE project: Intelligent Collections of food‐legume genetic resources for European agrofood systems

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The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants

scientific article published on 29 May 2018

The Interplay between Carbon Availability and Growth in Different Zones of the Growing Maize Leaf

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The Interplay between Sulfur and Iron Nutrition in Tomato.

scientific article published on 5 October 2015

The Lack of Mitochondrial Thioredoxin TRXo1 Affects In Vivo Alternative Oxidase Activity and Carbon Metabolism under Different Light Conditions

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The Mitochondrial Thioredoxin System Contributes to the Metabolic Responses Under Drought Episodes in Arabidopsis

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The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato

scientific article published on 14 May 2018

The Past, Present, and Future of Maize Improvement: Domestication, Genomics, and Functional Genomic Routes toward Crop Enhancement

scientific article published on 27 November 2019

The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants

scientific article published on 21 May 2020

The Photorespiratory Metabolite 2-Phosphoglycolate Regulates Photosynthesis and Starch Accumulation in Arabidopsis

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The Plant Journal actively supports Open Science and data transparency

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The Plastidic Sugar Transporter pSuT Influences Flowering and Affects Cold Responses

scientific article published on 27 November 2018

The Regulation of Essential Amino Acid Synthesis and Accumulation in Plants

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The Role of Abscisic Acid Signaling in Maintaining the Metabolic Balance Required for Arabidopsis Growth under Nonstress Conditions

scientific article published on 03 January 2019

The Role of Persulfide Metabolism During Arabidopsis Seed Development Under Light and Dark Conditions

scientific article published in 2018

The Role of SWI/SNF Chromatin Remodeling Complexes in Hormone Crosstalk

scientific article published on 17 February 2016

The Role of TCA Cycle Enzymes in Plants

scientific article published in 2023

The SAL-PAP Chloroplast Retrograde Pathway Contributes to Plant Immunity by Regulating Glucosinolate Pathway and Phytohormone Signaling

scientific article published on 13 July 2017

The Sexual Advantage of Looking, Smelling, and Tasting Good: The Metabolic Network that Produces Signals for Pollinators.

scientific article published on 19 January 2017

The Spatial Organization of Metabolism Within the Plant Cell ⬇️

scientific article published on January 16, 2013

The Structure and Function of Major Plant Metabolite Modifications

scientific article published on 11 June 2019

The Unprecedented Versatility of the Plant Thioredoxin System

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The Use of Natural Genetic Diversity in the Understanding of Metabolic Organization and Regulation ⬇️

scientific article published on September 30, 2011

The apoplastic antioxidant system and altered cell wall dynamics influence mesophyll conductance and the rate of photosynthesis

scientific article published on 15 July 2019

The arginine decarboxylase gene ADC1, associated to the putrescine pathway, plays an important role in potato cold-acclimated freezing tolerance as revealed by transcriptome and metabolome analyses

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The central carbon and energy metabolism of marine diatoms

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The central regulation of plant physiology by adenylates

scientific article published on 11 December 2009

The complex network of non-cellulosic carbohydrate metabolism

scientific article published on 16 April 2007

The complex role of mitochondrial metabolism in plant aluminum resistance

scientific article published on 24 January 2014

The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation

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The enigmatic contribution of mitochondrial function in photosynthesis

scientific article published on 5 February 2008

The essential role of sugar metabolism in the acclimation response of Arabidopsis thaliana to high light intensities

scientific article published on 12 February 2014

The essential role of the phosphorylated pathway of serine biosynthesis in Arabidopsis

scientific article published on November 2013

The evolution of metabolism: How to test evolutionary hypotheses at the genomic level

scientific article published on 20 February 2020

The evolution of phenylpropanoid metabolism in the green lineage

scientific article published on 25 January 2013

The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity

scientific article published on 16 February 2013

The form of nitrogen nutrition affects resistance against Pseudomonas syringae pv. phaseolicola in tobacco

scientific article published on 10 December 2012

The future of metabolic phytochemistry: larger numbers of metabolites, higher resolution, greater understanding

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The genetic architecture of branched-chain amino acid accumulation in tomato fruits ⬇️

scientific article published on March 24, 2011

The genetic architecture of photosynthesis and plant growth-related traits in tomato

scientific article published on 18 October 2017

The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization

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The genome of the stress-tolerant wild tomato species Solanum pennellii.

scientific article published on 27 July 2014

The genomes uncoupled-dependent signalling pathway coordinates plastid biogenesis with the synthesis of anthocyanins

scientific article published on 04 May 2020

The hydroxypyruvate-reducing system in Arabidopsis: multiple enzymes for the same end.

scientific article published on 23 December 2010

The influence of alternative pathways of respiration that utilize branched-chain amino acids following water shortage in Arabidopsis

scientific article published on 30 November 2015

The influence of cytosolic phosphoglucomutase on photosynthetic carbohydrate metabolism

scientific article published on 12 July 2002

The influence of cytosolic phosphorylating glyceraldehyde 3-phosphate dehydrogenase (GAPC) on potato tuber metabolism

scientific article published on 23 June 2006

The influence of fruit load on the tomato pericarp metabolome in a Solanum chmielewskii introgression line population

scientific article published on 14 September 2010

The kernel size-related quantitative trait locus qKW9 encodes a pentatricopeptide repeat protein that affects photosynthesis and grain filling

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The life of plant mitochondrial complex I.

scientific article published on 21 February 2014

The metabolic response of Arabidopsis roots to oxidative stress is distinct from that of heterotrophic cells in culture and highlights a complex relationship between the levels of transcripts, metabolites, and flux

scientific article published on 26 December 2008

The metabolic response of heterotrophic Arabidopsis cells to oxidative stress

scientific article published in 2007

The mitochondrial NAD+ transporter (NDT1) plays important roles in cellular NAD+ homeostasis in Arabidopsis thaliana

scientific article published on 09 August 2019

The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness

scientific article published in September 2006

The multifaceted role of aspartate-family amino acids in plant metabolism

scientific article published on 19 April 2012

The natural variance of the Arabidopsis floral secondary metabolites.

scientific article published on 3 April 2018

The phosphorylated pathway of serine biosynthesis is essential both for male gametophyte and embryo development and for root growth in Arabidopsis

scientific article published on 14 June 2013

The plant growth promoting substance, lumichrome, mimics starch, and ethylene-associated symbiotic responses in lotus and tomato roots

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The plant transcriptome-from integrating observations to models

scientific article published on 11 March 2013

The plastidial glyceraldehyde-3-phosphate dehydrogenase is critical for viable pollen development in Arabidopsis

scientific article published on 27 January 2010

The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice

scientific article published on 7 August 2017

The potato-specific apyrase is apoplastically localized and has influence on gene expression, growth, and development

scientific article published on 14 May 2008

The proof is in the bulb: glycerol influences key stages of lily development

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The regulatory interplay between photorespiration and photosynthesis

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The reliance of phytohormone biosynthesis on primary metabolite precursors

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The role of dynamic enzyme assemblies and substrate channelling in metabolic regulation.

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The role of nitrite and nitric oxide under low oxygen conditions in plants

scientific article published on 11 July 2019

The role of photosynthesis and amino acid metabolism in the energy status during seed development

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The sensitive to freezing3 mutation of Arabidopsis thaliana is a cold-sensitive allele of homomeric acetyl-CoA carboxylase that results in cold-induced cuticle deficiencies ⬇️

scientific article published on July 12, 2012

The specific overexpression of a cyclin-dependent kinase inhibitor in tomato fruit mesocarp cells uncouples endoreduplication and cell growth

scientific article published on 4 January 2011

The style and substance of plant flavonoid decoration; towards defining both structure and function

scientific article published on 20 March 2020

The sucrose transporter StSUT1 localizes to sieve elements in potato tuber phloem and influences tuber physiology and development

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The sucrose-to-malate ratio correlates with the faster CO2 and light stomatal responses of angiosperms compared to ferns

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The transcription factor AREB1 regulates primary metabolic pathways in tomato fruits.

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The transcription factor bZIP14 regulates the TCA cycle in the diatom Phaeodactylum tricornutum.

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The transporter GAT1 plays an important role in GABA-mediated carbon-nitrogen interactions in Arabidopsis

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The uncoupling of respiration in plant mitochondria: Keeping reactive oxygen and nitrogen species under control

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The use of metabolomics to dissect plant responses to abiotic stresses ⬇️

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The utility of metabolomics as a tool to inform maize biology

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Thioredoxin h2 contributes to the redox regulation of mitochondrial photorespiratory metabolism

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Thioredoxin, a master regulator of the tricarboxylic acid cycle in plant mitochondria

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Tissue specificity and differential expression of transcription factors in tomato provide hints of unique regulatory networks during fruit ripening

scientific article published on 16 October 2012

Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation

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To Bring Flowers or Do a Runner: Gibberellins Make the Decision

scientific article published on 14 December 2017

Tobacco guard cells fix CO2 by both Rubisco and PEPcase while sucrose acts as a substrate during light-induced stomatal opening

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Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde

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Tomato fruit photosynthesis is seemingly unimportant in primary metabolism and ripening but plays a considerable role in seed development

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Tomato multiomics at aPEELing resolution

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Toward the storage metabolome: profiling the barley vacuole

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Towards model-driven characterization and manipulation of plant lipid metabolism

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Transcript and metabolite profiling for the evaluation of tobacco tree and poplar as feedstock for the bio-based industry

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Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants

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Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence

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Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation.

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Transcriptional regulation of tocopherol biosynthesis in tomato

scientific article published on 18 December 2012

Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening

scientific article published on 11 March 2011

Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle.

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Transcriptomic analysis of the role of carboxylic acids in metabolite signaling in Arabidopsis leaves

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Transcriptomic and metabolomics responses to elevated cell wall invertase activity during tomato fruit set.

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Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

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Transition of primary to secondary cell wall synthesis

Translatome and metabolome effects triggered by gibberellins during rosette growth in Arabidopsis ⬇️

scientific article published on January 30, 2012

Tricarboxylic acid cycle activity regulates tomato root growth via effects on secondary cell wall production

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Trichoderma-plant root colonization: escaping early plant defense responses and activation of the antioxidant machinery for saline stress tolerance

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Tuber-specific cytosolic expression of a bacterial phosphoglucomutase in potato (Solanum tuberosum L.) dramatically alters carbon partitioning

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Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool

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Two alanine aminotranferases link mitochondrial glycolate oxidation to the major photorespiratory pathway in Arabidopsis and rice

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Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasis

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Type I H+-Pyrophosphatase Regulates the Vacuolar Storage of Sucrose in Citrus Fruit

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Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research

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Uncoupling proteins 1 and 2 (UCP1 and UCP2) from Arabidopsis thaliana are mitochondrial transporters of aspartate, glutamate and dicarboxylates

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Unraveling retrograde signaling pathways: finding candidate signaling molecules via metabolomics and systems biology driven approaches ⬇️

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Unraveling the role of fermentation in the mode of action of acetolactate synthase inhibitors by metabolic profiling

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Unravelling early events in the Taphrina deformans-Prunus persica interaction: an insight into the differential responses in resistant and susceptible genotypes

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Unravelling the in vivo regulation and metabolic role of the alternative oxidase pathway in C3 species under photoinhibitory conditions

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Unusual cyanobacterial TCA cycles: not broken just different

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Using precision phenotyping to inform de novo domestication

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Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control

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Validated MAGIC and GWAS populations mapping reveal the link between vitamin E contents and natural variation in chorismate metabolism in tomato

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Variability of metabolite levels is linked to differential metabolic pathways in Arabidopsis's responses to abiotic stresses

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Variation in a Poaceae-conserved fatty acid metabolic gene cluster controls rice yield by regulating male fertility

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Virus-induced alterations in primary metabolism modulate susceptibility to Tobacco rattle virus in Arabidopsis.

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