List of works - Sašo Džeroski

A Comparison of Different Data Transformation Approaches in the Feature Ranking Context

A framework for a European network for a systematic environmental impact assessment of genetically modified organisms (GMO)

A large-scale evaluation of computational protein function prediction

scientific article

A qualitative multi-attribute model for economic and ecological assessment of genetically modified crops

scientific article published in 2008

Adaptive Windowing for Online Learning from Multiple Inter-related Data Streams

Algorithm Instance Footprint: Separating Easily Solvable and Challenging Problem Instances

scientific article published on 12 July 2023

An extensive experimental comparison of methods for multi-label learning

article

Analysis of hallux valgus angles automatically extracted from 3D foot scans taken in North America, Europe, and Asia

scientific article published on 2 November 2022

Candida and Fusarium species known as opportunistic human pathogens from customer-accessible parts of residential washing machines

scientific article published on 8 January 2015

Changes of poultry faecal microbiota associated with Clostridium difficile colonisation

scientific article

Chaophilic or chaotolerant fungi: a new category of extremophiles?

scientific article published on 23 December 2014

Comparing Algorithm Selection Approaches on Black-Box Optimization Problems

scientific article published on 24 July 2023

Comparison of Tree-Based Methods for Multi-target Regression on Data Streams

Dealing with Spatial Autocorrelation in Gene Flow Modeling

article

Dealing with spatial autocorrelation when learning predictive clustering trees

article published in 2013

Decision trees for hierarchical multi-label classification

Diterpene structure elucidation from 13cnmr spectra with inductive logic programming

Domain-specific model selection for structural identification of the Rab5-Rab7 dynamics in endocytosis

scientific article published on 26 June 2015

Effect of Location, Disinfection, and Building Materials on the Presence and Richness of Culturable Mycobiota through Oligotrophic Drinking Water Systems

scientific article published on 6 November 2023

Equation discovery for systems biology: finding the structure and dynamics of biological networks from time course data

scientific article

Estimating vegetation height and canopy cover from remotely sensed data with machine learning

article

Evaluating the effect of Clostridium difficile conditioned medium on fecal microbiota community structure

scientific article published on 27 November 2017

Finding explained groups of time-course gene expression profiles with predictive clustering trees

scientific article published on 19 February 2010

First order random forests: Learning relational classifiers with complex aggregates

Generic ontology of datatypes

Global and Local Spatial Autocorrelation in Predictive Clustering Trees

Gut microbiota patterns associated with colonization of different Clostridium difficile ribotypes

scientific article

Habitat mapping using machine learning-extended kernel-based reclassification of an Ikonos satellite image

scholarly article by Andrej Kobler et al published January 2006 in Ecological Modelling

Improved medical image modality classification using a combination of visual and textual features

scientific article published on 19 June 2014

Incremental multi-target model trees for data streams

Induction of Slovene nominal paradigms

Learning Hierarchical Multi-label Classification Trees from Network Data

Learning model trees from evolving data streams

article

Learning stochastic process-based models of dynamical systems from knowledge and data

scientific article

Machine Learning, Ensemble Methods in

scholarly article published 2012

Machine learning-ready remote sensing data for Maya archaeology

scientific article published on 23 August 2023

Meta-Analysis and Experimental Validation Identified FREM2 and SPRY1 as New Glioblastoma Marker Candidates.

scientific article published on 4 May 2018

Meta-Model Framework for Surrogate-Based Parameter Estimation in Dynamical Systems

scientific article published in 2019

Modeling Dynamic Systems with Efficient Ensembles of Process-Based Models

scientific article

Modeling dynamical systems with data stream mining

Modeling water outflow from tile-drained agricultural fields

scientific article published on 21 October 2014

Multi-label Classification via Multi-target Regression on Data Streams

Multi-label classification via multi-target regression on data streams

Network Regression with Predictive Clustering Trees

Network regression with predictive clustering trees

Neuroblastoma tumorigenesis is regulated through the Nm23-H1/h-Prune C-terminal interaction

scientific article

Noise detection and elimination in data preprocessing: Experiments in medical domains

Online tree-based ensembles and option trees for regression on evolving data streams

article published in 2015

OntoDM-KDD: Ontology for Representing the Knowledge Discovery Process

Ontology Engineering: From an Art to a Craft

Ontology of core data mining entities

Option Predictive Clustering Trees for Hierarchical Multi-label Classification

Option Predictive Clustering Trees for Multi-target Regression

Parameter estimation with bio-inspired meta-heuristic optimization: modeling the dynamics of endocytosis

scientific article

Personality traits in miners with past occupational elemental mercury exposure

scientific article

Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships

scientific article

Predicting gene function using hierarchical multi-label decision tree ensembles

scientific article

Predictive model for the quantitative analysis of human skin using photothermal radiometry and diffuse reflectance spectroscopy

scientific article published on 28 February 2020

Process-based design of dynamical biological systems

scientific article

Production of Secondary Metabolites in Extreme Environments: Food- and Airborne Wallemia spp. Produce Toxic Metabolites at Hypersaline Conditions

scientific article (publication date: 2016)

Representing Entities in the OntoDM Data Mining Ontology

article published in 2010

Self-training for multi-target regression with tree ensembles

Semi-Supervised Predictive Clustering Trees for (Hierarchical) Multi-Label Classification

scientific article published on 13 April 2024

Semi-supervised Learning for Multi-target Regression

Semi-supervised classification trees

Semi-supervised trees for multi-target regression

Special issue on discovery science

Spruce bark beetles (Ips typographus, Pityogenes chalcographus, Col.: Scolytidae) in the Dinaric mountain forests of Slovenia: Monitoring and modeling

scientific article published in 2006

Surrogate models of radiative transfer codes for atmospheric trace gas retrievals from satellite observations

scientific article published on 22 March 2022

Survival analysis as semi-supervised multi-target regression for time-to-employment prediction using oblique predictive clustering trees

scientific article published in January 2024

TMPRSS2:ERG gene aberrations may provide insight into pT stage in prostate cancer

scientific article

The evolutionary signal in metagenome phyletic profiles predicts many gene functions

article

The feasibility of co-existence between conventional and genetically modified crops: Using machine learning to analyse the output of simulation models

scholarly article by Aneta Ivanovska et al published July 2008 in Ecological Modelling

Towards an Ontology of Data Mining Investigations

Trait-based risk assessment for invasive species: high performance across diverse taxonomic groups, geographic ranges and machine learning/statistical tools

article

Tree-based methods for online multi-target regression

Using Knowledge Graphs for Performance Prediction of Modular Optimization Algorithms

Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction

scientific article

Using classification trees to analyze the impact of exotic species on the ecological assessment of polder lakes in Flanders, Belgium

article

Using data mining to predict soil quality after application of biosolids in agriculture

scientific article

Using multi-objective classification to model communities of soil microarthropods

scientific article published in 2006

Using redescription mining to relate clinical and biological characteristics of cognitively impaired and Alzheimer's disease patients

scientific article published on 31 October 2017

Wet-dry-wet drug screen leads to the synthesis of TS1, a novel compound reversing lung fibrosis through inhibition of myofibroblast differentiation

scientific article published on 17 December 2021

List of works by Sašo Džeroski

A Comparison of Different Data Transformation Approaches in the Feature Ranking Context

A framework for a European network for a systematic environmental impact assessment of genetically modified organisms (GMO)

A large-scale evaluation of computational protein function prediction

A qualitative multi-attribute model for economic and ecological assessment of genetically modified crops

Adaptive Windowing for Online Learning from Multiple Inter-related Data Streams

Algorithm Instance Footprint: Separating Easily Solvable and Challenging Problem Instances

An extensive experimental comparison of methods for multi-label learning

Analysis of hallux valgus angles automatically extracted from 3D foot scans taken in North America, Europe, and Asia

Candida and Fusarium species known as opportunistic human pathogens from customer-accessible parts of residential washing machines

Changes of poultry faecal microbiota associated with Clostridium difficile colonisation

Chaophilic or chaotolerant fungi: a new category of extremophiles?

Comparing Algorithm Selection Approaches on Black-Box Optimization Problems

Comparison of Tree-Based Methods for Multi-target Regression on Data Streams

Dealing with Spatial Autocorrelation in Gene Flow Modeling

Dealing with spatial autocorrelation when learning predictive clustering trees

Decision trees for hierarchical multi-label classification

Diterpene structure elucidation from 13cnmr spectra with inductive logic programming

Domain-specific model selection for structural identification of the Rab5-Rab7 dynamics in endocytosis

Effect of Location, Disinfection, and Building Materials on the Presence and Richness of Culturable Mycobiota through Oligotrophic Drinking Water Systems

Equation discovery for systems biology: finding the structure and dynamics of biological networks from time course data

Estimating vegetation height and canopy cover from remotely sensed data with machine learning

Evaluating the effect of Clostridium difficile conditioned medium on fecal microbiota community structure

Finding explained groups of time-course gene expression profiles with predictive clustering trees

First order random forests: Learning relational classifiers with complex aggregates

Generic ontology of datatypes

Global and Local Spatial Autocorrelation in Predictive Clustering Trees

Gut microbiota patterns associated with colonization of different Clostridium difficile ribotypes

Habitat mapping using machine learning-extended kernel-based reclassification of an Ikonos satellite image

Improved medical image modality classification using a combination of visual and textual features

Incremental multi-target model trees for data streams

Induction of Slovene nominal paradigms

Learning Hierarchical Multi-label Classification Trees from Network Data

Learning model trees from evolving data streams

Learning stochastic process-based models of dynamical systems from knowledge and data

Machine Learning, Ensemble Methods in

Machine learning-ready remote sensing data for Maya archaeology

Meta-Analysis and Experimental Validation Identified FREM2 and SPRY1 as New Glioblastoma Marker Candidates.

Meta-Model Framework for Surrogate-Based Parameter Estimation in Dynamical Systems

Modeling Dynamic Systems with Efficient Ensembles of Process-Based Models

Modeling dynamical systems with data stream mining

Modeling water outflow from tile-drained agricultural fields

Multi-label Classification via Multi-target Regression on Data Streams

Multi-label classification via multi-target regression on data streams

Network Regression with Predictive Clustering Trees

Network regression with predictive clustering trees

Neuroblastoma tumorigenesis is regulated through the Nm23-H1/h-Prune C-terminal interaction

Noise detection and elimination in data preprocessing: Experiments in medical domains

Online tree-based ensembles and option trees for regression on evolving data streams

OntoDM-KDD: Ontology for Representing the Knowledge Discovery Process

Ontology Engineering: From an Art to a Craft

Ontology of core data mining entities

Option Predictive Clustering Trees for Hierarchical Multi-label Classification

Option Predictive Clustering Trees for Multi-target Regression

Parameter estimation with bio-inspired meta-heuristic optimization: modeling the dynamics of endocytosis

Personality traits in miners with past occupational elemental mercury exposure

Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships

Predicting gene function using hierarchical multi-label decision tree ensembles

Predictive model for the quantitative analysis of human skin using photothermal radiometry and diffuse reflectance spectroscopy

Process-based design of dynamical biological systems

Production of Secondary Metabolites in Extreme Environments: Food- and Airborne Wallemia spp. Produce Toxic Metabolites at Hypersaline Conditions

Representing Entities in the OntoDM Data Mining Ontology

Self-training for multi-target regression with tree ensembles

Semi-Supervised Predictive Clustering Trees for (Hierarchical) Multi-Label Classification

Semi-supervised Learning for Multi-target Regression

Semi-supervised classification trees

Semi-supervised trees for multi-target regression

Special issue on discovery science

Spruce bark beetles (Ips typographus, Pityogenes chalcographus, Col.: Scolytidae) in the Dinaric mountain forests of Slovenia: Monitoring and modeling

Surrogate models of radiative transfer codes for atmospheric trace gas retrievals from satellite observations

Survival analysis as semi-supervised multi-target regression for time-to-employment prediction using oblique predictive clustering trees

TMPRSS2:ERG gene aberrations may provide insight into pT stage in prostate cancer

The evolutionary signal in metagenome phyletic profiles predicts many gene functions

The feasibility of co-existence between conventional and genetically modified crops: Using machine learning to analyse the output of simulation models

Towards an Ontology of Data Mining Investigations

Trait-based risk assessment for invasive species: high performance across diverse taxonomic groups, geographic ranges and machine learning/statistical tools

Tree-based methods for online multi-target regression

Using Knowledge Graphs for Performance Prediction of Modular Optimization Algorithms

Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction

Using classification trees to analyze the impact of exotic species on the ecological assessment of polder lakes in Flanders, Belgium