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List of works by John G Kenny

A Framework for Multi-Omic Prediction of Treatment Response to Biologic Therapy for Psoriasis

scientific article published on 17 July 2018

A comparison of host gene expression signatures associated with infection in vitro by the Makona and Ecran (Mayinga) variants of Ebola virus.

scientific article published on 27 February 2017

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

scientific article published on 14 January 2016

A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample

scientific article published on 13 April 2018

A simple procedure for directly obtaining haplotype sequences of diploid genomes

scientific article published on 28 August 2015

Application of long read sequencing to determine expressed antigen diversity in Trypanosoma brucei infections

scientific article published on 03 April 2019

Application of long read sequencing to determine expressed antigen diversity in Trypanosoma brucei infections

Can long-range PCR be used to amplify genetically divergent mitochondrial genomes for comparative phylogenetics? A case study within spiders (Arthropoda: Araneae)

scientific article (publication date: 2013)

Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009

scientific article published on 10 January 2006

Comparative genomics and transduction potential of Enterococcus faecalis temperate bacteriophages

scientific article

DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies

scientific article published on 27 June 2019

Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

scientific article published on 07 March 2019

Elucidating variations in the nucleotide sequence of Ebola virus associated with increasing pathogenicity ⬇️

scientific article

Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences

scientific article published on 25 February 2021

Genome-wide DNA methylation patterns in wild samples of two morphotypes of threespine stickleback (Gasterosteus aculeatus).

scientific article published on 21 December 2014

Hidden variation in polyploid wheat drives local adaptation

scientific article published on 09 August 2018

Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom

scientific article published on 30 January 2020

Investigating the Influence of Ribavirin on Human Respiratory Syncytial Virus RNA Synthesis by Using a High-Resolution Transcriptome Sequencing Approach ⬇️

scientific article published on 9 December 2015

Large-scale and significant expression from pseudogenes in Sodalis glossinidius - a facultative bacterial endosymbiont

scientific article published on 01 January 2020

Mannitol utilisation is required for protection of Staphylococcus aureus from human skin antimicrobial fatty acids.

scientific article

Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline.

scientific article published on 13 October 2017

Phylogenomics of the killer whale indicates ecotype divergence in sympatry.

scientific article

Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift.

scientific article

SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms

scientific article published in July 2017

Single-step selection of bivalent aptamers validated by comparison with SELEX using high-throughput sequencing

scientific article

Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma

scientific article published on 23 April 2020

Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments

scientific article published on 22 August 2018

Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa

scientific article published on 17 June 2015

The Application of Metagenomics to Study Microbial Communities and Develop Desirable Traits in Fermented Foods

scientific article published in 2022

The Staphylococcus aureus response to unsaturated long chain free fatty acids: survival mechanisms and virulence implications

scientific article

Transcriptome sequencing of human breast cancer reveals aberrant intronic transcription in amplicons and dysregulation of alternative splicing with major therapeutic implications.

scientific article

Transcriptome-wide expression variation associated with environmental plasticity and mating success in cactophilic Drosophila mojavensis

scientific article published on 21 March 2013

Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli

scientific article published on 18 September 2015

Transcriptomic signatures differentiate survival from fatal outcomes in humans infected with Ebola virus

scientific article published on 19 January 2017

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