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List of works by Bobbie-Jo Webb-Robertson

A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry ⬇️

scientific article

A Study of spectral integration and normalization in NMR-based metabonomic analyses

scientific article published on 01 September 2005

A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.

scientific article

A compendium of multi-omics data illuminating host responses to lethal human virus infections

scientific article published in 2024

A comprehensive collection of systems biology data characterizing the host response to viral infection.

scientific article

A global survey of ATPase activity in Plasmodium falciparum asexual blood stages and gametocytes.

scientific article published on 27 October 2017

A semiautomated framework for integrating expert knowledge into disease marker identification

scientific article published on 10 October 2013

A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors.

scientific article

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

scientific article published on July 2010

Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry

scientific article published on 08 January 2014

Bayesian integration of isotope ratio for geographic sourcing of castor beans

scientific article

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

scientific article

Biallelic Mutations in ATP5F1D, which Encodes a Subunit of ATP Synthase, Cause a Metabolic Disorder

scientific article published on 16 February 2018

Challenges in Biomarker Discovery: Combining Expert Insights with Statistical Analysis of Complex Omics Data.

scientific article

Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria.

scientific article published on 30 September 2013

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data

scientific article

Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data.

scientific article

Current trends in computational inference from mass spectrometry-based proteomics.

scientific article published on 20 June 2007

Diet-induced obesity reprograms the inflammatory response of the murine lung to inhaled endotoxin

scientific article published on 7 January 2013

Differentiation of gram-negative bacterial aerosol exposure using detected markers in bronchial-alveolar lavage fluid

scientific article published on 16 September 2009

Disparate proteome responses of pathogenic and nonpathogenic aspergilli to human serum measured by activity-based protein profiling (ABPP).

scientific article published on 18 April 2013

Effects of delayed NSAID administration after experimental eccentric contraction injury – A cellular and proteomics study

scientific article (publication date: 28 February 2017)

Enabling proteomics discovery through visual analysis. The peptide permutation and protein prediction tool

scientific article published on 01 May 2005

Fusion of laboratory and textual data for investigative bioforensics ⬇️

scientific article published on January 10, 2013

Hepatic Cytochrome P450 Activity, Abundance, and Expression Throughout Human Development

scientific article

High-Fat Diets Alter the Modulatory Effects of Xenobiotics on Cytochrome P450 Activities

scientific article published on 04 May 2018

Impaired transcriptional response of the murine heart to cigarette smoke in the setting of high fat diet and obesity

scientific article

Improved quality control processing of peptide-centric LC-MS proteomics data

scientific article

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.

scientific article

Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms.

scientific article

Interpreting the lipidome: bioinformatic approaches to embrace the complexity

scientific article published on 06 June 2021

Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica

scientific article

MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

scientific article published on 16 January 2018

MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses

scientific article published on 10 May 2016

MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling

scientific article published on 16 January 2017

Measuring global credibility with application to local sequence alignment.

scientific article

Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury

scientific article published on 06 August 2013

Mining the human urine proteome for monitoring renal transplant injury

scientific article published on 04 March 2016

Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis

scientific article published on 15 November 2017

Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus

scientific article published on 30 April 2015

P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data

scientific article published on 06 February 2019

P-MartCancer-Interactive Online Software to Enable Analysis of Shotgun Cancer Proteomic Datasets ⬇️

scientific article published in November 2017

PQuad--a visual analysis platform for proteomic data exploration of microbial organisms.

scientific article

Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure

scientific article

Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses.

scientific article

Physicochemical property distributions for accurate and rapid pairwise protein homology detection

scientific article

Plasma biomarkers for detecting Hodgkin's lymphoma in HIV patients.

scientific article

Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers

scientific article published on 22 July 2020

Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation

scientific article

Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.

scientific article published on 15 May 2015

Proximity-dependent proteomics of the Chlamydia trachomatis inclusion membrane reveals functional interactions with endoplasmic reticulum exit sites

scientific article published on 03 April 2019

QC-ART: A tool for real-time quality control assessment of mass spectrometry-based proteomics data

scientific article published on 17 April 2018

Quantitative Differences in the Urinary Proteome of Siblings Discordant for Type 1 Diabetes Include Lysosomal Enzymes

scientific article published on 22 July 2015

Quantitative phosphoproteomics identifies filaggrin and other targets of ionizing radiation in a human skin model.

scientific article

Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells

scientific article published on 30 January 2013

Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics

scientific article published on 22 April 2015

SVM-BALSA: remote homology detection based on Bayesian sequence alignment.

scientific article published on 10 November 2005

SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.

scientific article

Sequential projection pursuit principal component analysis--dealing with missing data associated with new -omics technologies

scientific article

Serum Proteome Profiles in Stricturing Crohn's Disease: A Pilot Study

scientific article published in August 2015

Silymarin Suppresses Cellular Inflammation By Inducing Reparative Stress Signaling

scientific article

Smoking, COPD, and 3-nitrotyrosine levels of plasma proteins.

scientific article published on 6 June 2011

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice

scientific article

Spectral signatures for the classification of microbial species using Raman spectra.

scientific article

Statistically Driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network

scientific article published on 05 December 2019

Support vector machines for improved peptide identification from tandem mass spectrometry database search.

scientific article

Temporal expression profiling of plasma proteins reveals oxidative stress in early stages of Type 1 Diabetes progression.

scientific article published on 6 October 2017

Temporal profiles of plasma proteome during childhood development

scientific article published on 23 November 2016

The effects of low-dose irradiation on inflammatory response proteins in a 3D reconstituted human skin tissue model.

scientific article published on 3 October 2012

The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates

scientific article

The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation

scientific article

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data

scientific article

VIBE 2.0: visual integration for bayesian evaluation

scientific article

pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data

scientific article published on 28 January 2019

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