Search filters

List of works by Brett G Olivier

A systematic assessment of current genome-scale metabolic reconstruction tools

scientific article published on 07 August 2019

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

scientific article

Comparing the regulatory behaviour of two cooperative, reversible enzyme mechanisms.

scientific article published in September 2006

Constraint-based stoichiometric modelling from single organisms to microbial communities.

scientific article published on November 2016

FAME, the Flux Analysis and Modeling Environment

scientific article

Fast flux module detection using matroid theory.

scientific article published on 7 January 2015

Harmonizing semantic annotations for computational models in biology

Harmonizing semantic annotations for computational models in biology

scientific article published on 01 March 2019

High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers

scientific article published on 05 May 2021

Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis

scientific article published on 08 September 2016

Interplay between constraints, objectives, and optimality for genome-scale stoichiometric models

scientific article published on 7 April 2015

JWS online cellular systems modelling and microbiology.

scientific article

MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 March 2020

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

article by Dagmar Waltemath et al published 15 March 2014 in Standards in genomic sciences

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Modeling and Simulation Tools: From Systems Biology to Systems Medicine.

scientific article published on January 2016

Probing the genome-scale metabolic landscape of Bordetella pertussis, the causative agent of whooping cough.

scientific article published on 25 August 2017

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 April 2020

SBML Level 3 Package Proposal: Flux

SBML Level 3 Package: Flux Balance Constraints version 2

scientific article published on 09 March 2018

SBML Level 3: an extensible format for the exchange and reuse of biological models

scientific article published on 01 August 2020

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). ⬇️

scientific article published on 19 March 2018

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

scientific article

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance Constraints.

scientific article published on 04 September 2015

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2

scientific article published on 20 June 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

scientific article published on 9 March 2018

Web-based kinetic modelling using JWS Online.

scientific article

What it takes to understand and cure a living system: computational systems biology and a systems biology-driven pharmacokinetics-pharmacodynamics platform

scientific article published on 8 December 2010

Paulina is supported by:

About Paulina

Help