List of works - Paul L.E. Bodelier

A combination of host ecology and habitat but not evolutionary history explains differences in the microbiomes associated with rotifers

scientific article published in 2022

A nested PCR approach for improved recovery of archaeal 16S rRNA gene fragments from freshwater samples.

scientific article published on 10 July 2009

Abundance and δ13C values of fatty acids in lacustrine surface sediments: Relationships with in-lake methane concentrations

article

Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp.

scientific article published in February 2011

Ammonia-limited conditions cause of Thaumarchaeal dominance in volcanic grassland soil.

scientific article published on 5 February 2015

Animal-plant-microbe interactions: direct and indirect effects of swan foraging behaviour modulate methane cycling in temperate shallow wetlands.

scientific article published on 31 May 2006

Aquatic herbivores facilitate the emission of methane from wetlands

scientific article

Archaeal dominated ammonia-oxidizing communities in Icelandic grassland soils are moderately affected by long-term N fertilization and geothermal heating

scientific article

Biogeography of sulfate-reducing prokaryotes in river floodplains.

scientific article published in June 2008

Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

scientific article

Biphasic kinetics of a methanotrophic community is a combination of growth and increased activity per cell.

scientific article published in January 2010

Characterization of Methylobacterium strains isolated from the phyllosphere and description of Methylobacterium longum sp. nov.

scientific article

Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, using PCR, DGGE and oligonucleotide probe hybridisation

scientific article published in December 1998

Compositional and functional stability of aerobic methane consuming communities in drained and rewetted peat meadows.

scientific article published on 7 October 2015

Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies.

scientific article published on 13 August 2012

Contribution of methanotrophic and nitrifying bacteria to CH4 and NH4+ oxidation in the rhizosphere of rice plants as determined by new methods of discrimination

scientific article

Conventional methanotrophs are responsible for atmospheric methane oxidation in paddy soils.

scientific article published on June 2016

Differential effects of nitrogenous fertilizers on methane-consuming microbes in rice field and forest soils

scientific article published in February 2006

Distribution and diversity of Gallionella-like neutrophilic iron oxidizers in a tidal freshwater marsh.

scientific article published on 11 February 2011

Diversity of iron oxidizers in wetland soils revealed by novel 16S rRNA primers targeting Gallionella-related bacteria.

scientific article

Does microbial stoichiometry modulate eutrophication of aquatic ecosystems?

scientific article published on 11 December 2012

Dynamics of nitrification and denitrification in root-oxygenated sediments and adaptation of ammonia-oxidizing bacteria to low-oxygen or anoxic habitats.

scientific article published on November 1996

Effect of redox conditions on bacterial community structure in Baltic Sea sediments with contrasting phosphorus fluxes

scientific article published on 25 March 2014

Effect of salinity on temporal and spatial dynamics of ammonia-oxidising bacteria from intertidal freshwater sediment

scientific article published in August 2005

Effects of photoperiod on growth of and denitrification by Pseudomonas chlororaphis in the root zone of Glyceria maxima, studied in a gnotobiotic microcosm

scientific article published in 1997

Environmental legacy contributes to the resilience of methane consumption in a laboratory microcosm system.

scientific article published on 11 June 2018

Epiphyton as a niche for ammonia-oxidizing bacteria: detailed comparison with benthic and pelagic compartments in shallow freshwater lakes

scientific article published on 8 February 2008

Ethyl tert-butyl ether (EtBE) degradation by an algal-bacterial culture obtained from contaminated groundwater

article

Field-scale tracking of active methane-oxidizing communities in a landfill cover soil reveals spatial and seasonal variability.

scientific article published on 13 October 2014

Hydrology is reflected in the functioning and community composition of methanotrophs in the littoral wetland of a boreal lake.

scientific article

Impact of Peat Mining and Restoration on Methane Turnover Potential and Methane-Cycling Microorganisms in a Northern Bog.

scientific article published on 27 November 2017

Impacts of inter- and intralaboratory variations on the reproducibility of microbial community analyses

scientific article

Improved PCR-DGGE for high resolution diversity screening of complex sulfate-reducing prokaryotic communities in soils and sediments.

scientific article

Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil

scientific article published on 23 May 2014

Interactions between nitrifying and denitrifying bacteria in gnotobiotic microcosms planted with the emergent macrophyte Glyceria maxima

scientific article published in January 1998

Living apart together-bacterial volatiles influence methanotrophic growth and activity.

scientific article published on 30 January 2018

Methane as a carbon source for the food web in raised bog pools

Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia.

scientific article

Methane-derived carbon flows through methane-oxidizing bacteria to higher trophic levels in aquatic systems.

scientific article published in May 2007

Methanotroph Ecology, Environmental Distribution and Functioning

Methanotrophs dominate methanogens and act as a methane sink in a subterranean karst cave

scientific article published in 2023

Methylocystis bryophila sp. nov., a facultatively methanotrophic bacterium from acidic Sphagnum peat, and emended description of the genus Methylocystis (ex Whittenbury et al. 1970) Bowman et al. 1993.

scientific article

Methylocystis heyeri sp. nov., a novel type II methanotrophic bacterium possessing 'signature' fatty acids of type I methanotrophs.

scientific article

Methylomonas paludis sp. nov., the first acid-tolerant member of the genus Methylomonas, from an acidic wetland.

scientific article

Methylotetracoccus oryzae Strain C50C1 Is a Novel Type Ib Gammaproteobacterial Methanotroph Adapted to Freshwater Environments

scientific article published on 05 June 2019

Microbial minorities modulate methane consumption through niche partitioning

scientific article

Microbiology of wetlands.

scientific article published on 5 April 2013

Modulation of Litter Decomposition by the Soil Microbial Food Web Under Influence of Land Use Change

scientific article published on 26 November 2018

New DGGE strategies for the analyses of methanotrophic microbial communities using different combinations of existing 16S rRNA-based primers

scientific article published in April 2005

Niche differentiation of atmospheric methane‐oxidizing bacteria and their community assembly in subsurface karst caves

scientific article published in 2022

Nitrogen as a regulatory factor of methane oxidation in soils and sediments.

scientific article published on March 2004

Organic Residue Amendments to Modulate Greenhouse Gas Emissions From Agricultural Soils

article

Oxygen consumption kinetics of Nitrosomonas europaea and Nitrobacter hamburgensis grown in mixed continuous cultures at different oxygen concentrations

scientific article published in 1994

Peatland vascular plant functional types affect methane dynamics by altering microbial community structure

article

Phylogenetic Characterization of Phosphatase-Expressing Bacterial Communities in Baltic Sea Sediments

scientific article published on 28 March 2015

Plant community flood resilience in intensively managed grasslands and the role of the plant economic spectrum

scientific article published on 16 May 2020

Positive diversity-functioning relationships in model communities of methanotrophic bacteria.

scientific article published on 11 January 2018

Quantitative assessment of ammonia-oxidizing bacterial communities in the epiphyton of submerged macrophytes in shallow lakes

scientific article published on 22 January 2010

Recurrence and Frequency of Disturbance have Cumulative Effect on Methanotrophic Activity, Abundance, and Community Structure

scientific article published on January 2015

Remarkable recovery and colonization behaviour of methane oxidizing bacteria in soil after disturbance is controlled by methane source only.

scientific article

Resistance and Recovery of Methane-Oxidizing Communities Depends on Stress Regime and History; A Microcosm Study

scientific article published on 31 July 2018

Response of the sulfate-reducing community to the re-establishment of estuarine conditions in two contrasting soils: a mesocosm approach.

scientific article published in January 2010

Revisiting life strategy concepts in environmental microbial ecology.

scientific article published on 22 January 2017

Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake.

scientific article published on 23 November 2012

Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil

scientific article published in April 2017

Spatial patterns of iron- and methane-oxidizing bacterial communities in an irregularly flooded, riparian wetland

scientific article published on 23 February 2012

Spatial patterns of methanotrophic communities along a hydrological gradient in a riparian wetland.

scientific article published on 11 March 2013

Stimulation by ammonium-based fertilizers of methane oxidation in soil around rice roots

scientific article

Structural and functional response of methane-consuming microbial communities to different flooding regimes in riparian soils.

scientific article

Sustainability: Bypassing the methane cycle.

scientific article published on 22 July 2015

Temporal and spatial coexistence of archaeal and bacterial amoA genes and gene transcripts in Lake Lucerne.

scientific article published on 5 March 2013

The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration.

scientific article

Toward understanding, managing, and protecting microbial ecosystems.

scientific article

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning.

scientific article

Trophic state changes can affect the importance of methane-derived carbon in aquatic food webs

scientific article published in June 2017

USC<i>γ</i> Dominated Community Composition and Cooccurrence Network of Methanotrophs and Bacteria in Subterranean Karst Caves

scientific article published on 18 August 2021

Unexpected role of canonical aerobic methanotrophs in upland agricultural soils

scientific article published in 2019

Unexpected stimulation of soil methane uptake as emergent property of agricultural soils following bio-based residue application.

scientific article published on 13 May 2015

Weak phylogenetic signal in physiological traits of methane-oxidizing bacteria.

scientific article

Whole-community genome amplification (WCGA) leads to compositional bias in methane-oxidizing communities as assessed by pmoA-based microarray analyses and QPCR.

scientific article published on 13 August 2009

Zwartia hollandica gen. nov., sp. nov., Jezberella montanilacus gen. nov., sp. nov. and Sheuella amnicola gen. nov., comb. nov., representing the environmental GKS98 (betIII) cluster ⬇️

scientific article published on 7 September 2022

List of works by Paul L.E. Bodelier

A combination of host ecology and habitat but not evolutionary history explains differences in the microbiomes associated with rotifers

A nested PCR approach for improved recovery of archaeal 16S rRNA gene fragments from freshwater samples.

Abundance and δ13C values of fatty acids in lacustrine surface sediments: Relationships with in-lake methane concentrations

Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp.

Ammonia-limited conditions cause of Thaumarchaeal dominance in volcanic grassland soil.

Animal-plant-microbe interactions: direct and indirect effects of swan foraging behaviour modulate methane cycling in temperate shallow wetlands.

Aquatic herbivores facilitate the emission of methane from wetlands

Archaeal dominated ammonia-oxidizing communities in Icelandic grassland soils are moderately affected by long-term N fertilization and geothermal heating

Biogeography of sulfate-reducing prokaryotes in river floodplains.

Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

Biphasic kinetics of a methanotrophic community is a combination of growth and increased activity per cell.

Characterization of Methylobacterium strains isolated from the phyllosphere and description of Methylobacterium longum sp. nov.

Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, using PCR, DGGE and oligonucleotide probe hybridisation

Compositional and functional stability of aerobic methane consuming communities in drained and rewetted peat meadows.

Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies.

Contribution of methanotrophic and nitrifying bacteria to CH4 and NH4+ oxidation in the rhizosphere of rice plants as determined by new methods of discrimination

Conventional methanotrophs are responsible for atmospheric methane oxidation in paddy soils.

Differential effects of nitrogenous fertilizers on methane-consuming microbes in rice field and forest soils

Distribution and diversity of Gallionella-like neutrophilic iron oxidizers in a tidal freshwater marsh.

Diversity of iron oxidizers in wetland soils revealed by novel 16S rRNA primers targeting Gallionella-related bacteria.

Does microbial stoichiometry modulate eutrophication of aquatic ecosystems?

Dynamics of nitrification and denitrification in root-oxygenated sediments and adaptation of ammonia-oxidizing bacteria to low-oxygen or anoxic habitats.

Effect of redox conditions on bacterial community structure in Baltic Sea sediments with contrasting phosphorus fluxes

Effect of salinity on temporal and spatial dynamics of ammonia-oxidising bacteria from intertidal freshwater sediment

Effects of photoperiod on growth of and denitrification by Pseudomonas chlororaphis in the root zone of Glyceria maxima, studied in a gnotobiotic microcosm

Environmental legacy contributes to the resilience of methane consumption in a laboratory microcosm system.

Epiphyton as a niche for ammonia-oxidizing bacteria: detailed comparison with benthic and pelagic compartments in shallow freshwater lakes

Ethyl tert-butyl ether (EtBE) degradation by an algal-bacterial culture obtained from contaminated groundwater

Field-scale tracking of active methane-oxidizing communities in a landfill cover soil reveals spatial and seasonal variability.

Hydrology is reflected in the functioning and community composition of methanotrophs in the littoral wetland of a boreal lake.

Impact of Peat Mining and Restoration on Methane Turnover Potential and Methane-Cycling Microorganisms in a Northern Bog.

Impacts of inter- and intralaboratory variations on the reproducibility of microbial community analyses

Improved PCR-DGGE for high resolution diversity screening of complex sulfate-reducing prokaryotic communities in soils and sediments.

Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil

Interactions between nitrifying and denitrifying bacteria in gnotobiotic microcosms planted with the emergent macrophyte Glyceria maxima

Living apart together-bacterial volatiles influence methanotrophic growth and activity.

Methane as a carbon source for the food web in raised bog pools

Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia.

Methane-derived carbon flows through methane-oxidizing bacteria to higher trophic levels in aquatic systems.

Methanotroph Ecology, Environmental Distribution and Functioning

Methanotrophs dominate methanogens and act as a methane sink in a subterranean karst cave

Methylocystis bryophila sp. nov., a facultatively methanotrophic bacterium from acidic Sphagnum peat, and emended description of the genus Methylocystis (ex Whittenbury et al. 1970) Bowman et al. 1993.

Methylocystis heyeri sp. nov., a novel type II methanotrophic bacterium possessing 'signature' fatty acids of type I methanotrophs.

Methylomonas paludis sp. nov., the first acid-tolerant member of the genus Methylomonas, from an acidic wetland.

Methylotetracoccus oryzae Strain C50C1 Is a Novel Type Ib Gammaproteobacterial Methanotroph Adapted to Freshwater Environments

Microbial minorities modulate methane consumption through niche partitioning

Microbiology of wetlands.

Modulation of Litter Decomposition by the Soil Microbial Food Web Under Influence of Land Use Change

New DGGE strategies for the analyses of methanotrophic microbial communities using different combinations of existing 16S rRNA-based primers

Niche differentiation of atmospheric methane‐oxidizing bacteria and their community assembly in subsurface karst caves

Nitrogen as a regulatory factor of methane oxidation in soils and sediments.

Organic Residue Amendments to Modulate Greenhouse Gas Emissions From Agricultural Soils

Oxygen consumption kinetics of Nitrosomonas europaea and Nitrobacter hamburgensis grown in mixed continuous cultures at different oxygen concentrations

Peatland vascular plant functional types affect methane dynamics by altering microbial community structure

Phylogenetic Characterization of Phosphatase-Expressing Bacterial Communities in Baltic Sea Sediments

Plant community flood resilience in intensively managed grasslands and the role of the plant economic spectrum

Positive diversity-functioning relationships in model communities of methanotrophic bacteria.

Quantitative assessment of ammonia-oxidizing bacterial communities in the epiphyton of submerged macrophytes in shallow lakes

Recurrence and Frequency of Disturbance have Cumulative Effect on Methanotrophic Activity, Abundance, and Community Structure

Remarkable recovery and colonization behaviour of methane oxidizing bacteria in soil after disturbance is controlled by methane source only.

Resistance and Recovery of Methane-Oxidizing Communities Depends on Stress Regime and History; A Microcosm Study

Response of the sulfate-reducing community to the re-establishment of estuarine conditions in two contrasting soils: a mesocosm approach.

Revisiting life strategy concepts in environmental microbial ecology.

Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake.

Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil

Spatial patterns of iron- and methane-oxidizing bacterial communities in an irregularly flooded, riparian wetland

Spatial patterns of methanotrophic communities along a hydrological gradient in a riparian wetland.

Stimulation by ammonium-based fertilizers of methane oxidation in soil around rice roots

Structural and functional response of methane-consuming microbial communities to different flooding regimes in riparian soils.

Sustainability: Bypassing the methane cycle.

Temporal and spatial coexistence of archaeal and bacterial amoA genes and gene transcripts in Lake Lucerne.

The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration.

Toward understanding, managing, and protecting microbial ecosystems.

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning.

Trophic state changes can affect the importance of methane-derived carbon in aquatic food webs

USC<i>γ</i> Dominated Community Composition and Cooccurrence Network of Methanotrophs and Bacteria in Subterranean Karst Caves

Unexpected role of canonical aerobic methanotrophs in upland agricultural soils

Unexpected stimulation of soil methane uptake as emergent property of agricultural soils following bio-based residue application.

Weak phylogenetic signal in physiological traits of methane-oxidizing bacteria.