List of works - Tobin R. Sosnick

Random-coil behavior and the dimensions of chemically unfolded proteins

scholarly article

TULIPs: tunable, light-controlled interacting protein tags for cell biology

scientific article published on March 4, 2012

Statistical coil model of the unfolded state: resolving the reconciliation problem

scientific article published on 30 August 2005

Light-activated DNA binding in a designed allosteric protein

scholarly article

RNA folding during transcription

scientific article

Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response

scientific article published in March 2017

Rationally improving LOV domain-based photoswitches

scientific article published on 20 June 2010

Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins

scientific article

RNA folding: models and perspectives

scientific article

Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library

scientific article published in July 2005

The folding of single domain proteins—have we reached a consensus?

scientific article published on 06 December 2010

Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding

scientific article published in November 2002

Outcome of a workshop on applications of protein models in biomedical research

scientific article (publication date: 13 February 2009)

Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures

scholarly article

Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme

scientific article published on 2 January 2004

Thymosin beta 4 binds actin in an extended conformation and contacts both the barbed and pointed ends

scientific article (publication date: 13 May 1997)

The Highly Cooperative Folding of Small Naturally Occurring Proteins Is Likely the Result of Natural Selection

article by Alexander L. Watters et al published February 2007 in Cell

Early collapse is not an obligate step in protein folding

scientific article published in April 2004

Discerning the structure and energy of multiple transition states in protein folding using psi-analysis

scientific article

Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides

scientific article

Differences in the folding transition state of ubiquitin indicated by phi and psi analyses

scientific article

The Amino-Terminal Helix Modulates Light-Activated Conformational Changes in AsLOV2

scientific article published on March 7, 2012

Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch

scientific article published on February 13, 2012

Factors That Control the Chemistry of the LOV Domain Photocycle

scientific article published on January 27, 2014

Mimicking the folding pathway to improve homology-free protein structure prediction

scientific article

Small-Angle X-ray Scattering and Single-Molecule FRET Spectroscopy Produce Highly Divergent Views of the Low-Denaturant Unfolded State

scientific article published on January 27, 2012

Characterizing the protein folding transition state using psi analysis

scientific article

Folding of a large protein at high structural resolution

scientific article published on November 4, 2013

Modeling the Hydration Layer around Proteins: Applications to Small- and Wide-Angle X-Ray Scattering

scientific article published on October 19, 2011

Benchmarking all-atom simulations using hydrogen exchange

scientific article published on October 27, 2014

Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects

scientific article

Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations

scientific article published on October 13, 2014

Fast folding of a helical protein initiated by the collision of unstructured chains

scholarly article

Kinetic barriers and the role of topology in protein and RNA folding

scientific article published on 23 May 2008

Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water.

scientific article published in October 2017

De novo prediction of protein folding pathways and structure using the principle of sequential stabilization

scientific article (publication date: 23 October 2012)

Large-scale context in protein folding: villin headpiece

scientific article published on January 2003

Minimalist representations and the importance of nearest neighbor effects in protein folding simulations

scientific article published on 18 August 2006

Efficient fluorescence labeling of a large RNA through oligonucleotide hybridization

scientific article published on 21 December 2004

Modeling the hydration layer around proteins: HyPred

scientific article

On the precision of experimentally determined protein folding rates and phi-values

scientific article

Automated Real-Space Refinement of Protein Structures Using a Realistic Backbone Move Set

scientific article published on August 17, 2011

Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification

scientific article

Contribution of hydrogen bonding to protein stability estimated from isotope effects

scientific article

Quantifying the structural requirements of the folding transition state of protein A and other systems

scientific article published on July 2008

Protein vivisection reveals elusive intermediates in folding

scientific article

Ubiquitin is a novel substrate for human insulin-degrading enzyme

scientific article

Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA.

scholarly article

Discovering RNA-Protein Interactome by Using Chemical Context Profiling of the RNA-Protein Interface

scientific article (publication date: 30 May 2013)

Random coil negative control reproduces the discrepancy between scattering and FRET measurements of denatured protein dimensions

scientific article published on May 11, 2015

List of works by Tobin R. Sosnick

Random-coil behavior and the dimensions of chemically unfolded proteins

TULIPs: tunable, light-controlled interacting protein tags for cell biology

Statistical coil model of the unfolded state: resolving the reconciliation problem

Light-activated DNA binding in a designed allosteric protein

RNA folding during transcription

Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response

Rationally improving LOV domain-based photoswitches

Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins

RNA folding: models and perspectives

Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library

The folding of single domain proteins—have we reached a consensus?

Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding

Outcome of a workshop on applications of protein models in biomedical research

Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures

Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme

Thymosin beta 4 binds actin in an extended conformation and contacts both the barbed and pointed ends

The Highly Cooperative Folding of Small Naturally Occurring Proteins Is Likely the Result of Natural Selection

Early collapse is not an obligate step in protein folding

Discerning the structure and energy of multiple transition states in protein folding using psi-analysis

Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides

Differences in the folding transition state of ubiquitin indicated by phi and psi analyses

The Amino-Terminal Helix Modulates Light-Activated Conformational Changes in AsLOV2

Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch

Factors That Control the Chemistry of the LOV Domain Photocycle

Mimicking the folding pathway to improve homology-free protein structure prediction

Small-Angle X-ray Scattering and Single-Molecule FRET Spectroscopy Produce Highly Divergent Views of the Low-Denaturant Unfolded State

Characterizing the protein folding transition state using psi analysis

Folding of a large protein at high structural resolution

Modeling the Hydration Layer around Proteins: Applications to Small- and Wide-Angle X-Ray Scattering

Benchmarking all-atom simulations using hydrogen exchange

Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects

Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations

Fast folding of a helical protein initiated by the collision of unstructured chains

Kinetic barriers and the role of topology in protein and RNA folding

Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water.

De novo prediction of protein folding pathways and structure using the principle of sequential stabilization

Large-scale context in protein folding: villin headpiece

Minimalist representations and the importance of nearest neighbor effects in protein folding simulations

Efficient fluorescence labeling of a large RNA through oligonucleotide hybridization

Modeling the hydration layer around proteins: HyPred

On the precision of experimentally determined protein folding rates and phi-values

Automated Real-Space Refinement of Protein Structures Using a Realistic Backbone Move Set

Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification

Contribution of hydrogen bonding to protein stability estimated from isotope effects

Quantifying the structural requirements of the folding transition state of protein A and other systems

Protein vivisection reveals elusive intermediates in folding

Ubiquitin is a novel substrate for human insulin-degrading enzyme

Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA.

Discovering RNA-Protein Interactome by Using Chemical Context Profiling of the RNA-Protein Interface

Random coil negative control reproduces the discrepancy between scattering and FRET measurements of denatured protein dimensions