List of works by A. Daniel Jones

A Feedback-Insensitive Isopropylmalate Synthase Affects Acylsugar Composition in Cultivated and Wild Tomato.

scientific article published on 18 May 2015

A depressant insect-selective toxin analog from the venom of the scorpion Leiurus quinquestriatus hebraeus--purification and structure/function characterization.

scientific article published in May 1998

A point mutation converts dihydroneopterin aldolase to a cofactor-independent oxygenase

scientific article published on 01 October 2006

A root-expressed L-phenylalanine:4-hydroxyphenylpyruvate aminotransferase is required for tropane alkaloid biosynthesis in Atropa belladonna

scientific article published on 16 September 2014

Acylsugar Acylhydrolases: Carboxylesterase-Catalyzed Hydrolysis of Acylsugars in Tomato Trichomes.

scientific article published on 25 January 2016

Alkaloids of the Genus Datura: Review of a Rich Resource for Natural Product Discovery

scientific article published on 30 April 2021

An Integrated Analytical Approach Reveals Trichome Acylsugar Metabolite Diversity in the Wild Tomato Solanum pennellii

scientific article published on 09 October 2020

An improved protocol for determining ratios of retinol-d4 to retinol isolated from human plasma.

scientific article published in August 1993

Analysis of apocarotenoids and retinoids by capillary gas chromatography-mass spectrometry

scientific article published on 01 January 1992

Analysis of mercapturic acid conjugates of xenobiotic compounds using negative ionization and tandem mass spectrometry

scientific article published on 01 January 1993

Analysis of natural and induced variation in tomato glandular trichome flavonoids identifies a gene not present in the reference genome.

scientific article published on 15 August 2014

Analysis of the stability of amino acids derivatized with naphthalene-2,3-dicarboxaldehyde using high-performance liquid chromatography and mass spectrometry.

scientific article

Antimicrobial Activity of Chestnut Extracts for Potential Use in Managing Soilborne Plant Pathogens

scientific article published on 01 March 2012

Aryl hydrocarbon receptor-mediated induction of Stearoyl-CoA desaturase 1 alters hepatic fatty acid composition in TCDD-elicited steatosis

scientific article published on 2 September 2011

Association of Metabolites, Nutrients, and Toxins in Maternal and Cord Serum with Asthma, IgE, SPT, FeNO, and Lung Function in Offspring

scientific article published in 2023

Atmospheric pressure femtosecond laser imaging mass spectrometry.

scientific article

Automated analysis of scanning electron microscopic images for assessment of hair surface damage

scientific article published on 15 January 2020

Beneficial effects of Lactobacillus reuteri 6475 on bone density in male mice is dependent on lymphocytes

scientific article published on 11 October 2019

Bioassay-directed fractionation for discovery of bioactive neutral lipids guided by relative mass defect filtering and multiplexed collision-induced dissociation.

scientific article

Biochemical evidence for multiple dimeric states of the Sinorhizobium meliloti DctD receiver domain

scientific article published on 01 September 2002

Bioengineering and Bioinformatics Summer Institutes: meeting modern challenges in undergraduate summer research.

scientific article

COR pulmonale is caused by monocrotaline and dehydromonocrotaline, but not by glutathione or cysteine conjugates of dihydropyrrolizine.

scientific article published on January 1993

Camptotheca acuminata 10-hydroxycamptothecin O-methyltransferase: an alkaloid biosynthetic enzyme co-opted from flavonoid metabolism

scientific article published on 19 May 2018

Cardiolipin-mediated mitochondrial dynamics and stress response in Arabidopsis

scientific article

Changes in myosin structure and function in response to glycation.

scientific article

Characterization of Trichome-Expressed BAHD Acyltransferases in Petunia axillaris Reveals Distinct Acylsugar Assembly Mechanisms within the Solanaceae

scientific article published on 12 July 2017

Characterization of smokeless powders using multiplexed collision-induced dissociation mass spectrometry and chemometric procedures.

scientific article

Chemical Profiling of Volatile Organic Compounds in the Headspace of Algal Cultures as Early Biomarkers of Algal Pond Crashes

scientific article published on 25 September 2019

Chemical imaging of trichome specialized metabolites using contact printing and laser desorption/ionization mass spectrometry.

scientific article

Citramalate synthase yields a biosynthetic pathway for isoleucine and straight- and branched-chain ester formation in ripening apple fruit

scientific article published in 2021

Comparative functional genomic analysis of Solanum glandular trichome types ⬇️

scientific article published on November 19, 2010

Comparative lipidomic profiling of xylose-metabolizing S. cerevisiae and its parental strain in different media reveals correlations between membrane lipids and fermentation capacity.

scientific article published in January 2011

Comparative metabolic profiling revealed limitations in xylose-fermenting yeast during co-fermentation of glucose and xylose in the presence of inhibitors

scientific article published on 01 January 2014

Comparative structural profiling of trichome specialized metabolites in tomato (Solanum lycopersicum) and S. habrochaites: acylsugar profiles revealed by UHPLC/MS and NMR.

scientific article published on 19 September 2013

Constitutive activation of the jasmonate signaling pathway enhances the production of secondary metabolites in tomato

scientific article published on 07 April 2006

Contamination of fresh and ensiled maize by multiple penicillium mycotoxins.

scientific article

Copper (II) complexation in northern California rice field waters: an investigation using differential pulse anodic and cathodic stripping voltammetry.

scientific article published in March 1998

Dependence of negative-mode electrospray ionization response factors on mobile phase composition and molecular structure for newly-authenticated neutral acylsucrose metabolites

scientific article published on 01 October 2015

Desorption-ionization mass spectrometry using deposited nanostructured silicon films

scientific article published on 01 March 2001

Determination of betaine metabolites and dimethylsulfoniopropionate in coral tissues using liquid chromatography-time-of-flight mass spectrometry and stable isotope-labeled internal standards.

scientific article

Determination of blood folate using acid extraction and internally standardized gas chromatography-mass spectrometry detection.

scientific article published on August 2000

Determination of pyrrolizidine alkaloid metabolites from mouse liver microsomes using tandem mass spectrometry and gas chromatography/mass spectrometry.

scientific article published in March 1988

Development of a class-selective enzyme-linked immunosorbent assay for mercapturic acids in human urine.

scientific article published in December 2000

Di(2-ethylhexyl) phthalate is a highly potent agonist for the human constitutive androstane receptor splice variant CAR2.

scientific article published on 11 February 2009

Differences in the Oxylipid Profiles of Bovine Milk and Plasma at Different Stages of Lactation

scientific article published on June 2017

Differential cellular responses to protein adducts of naphthoquinone and monocrotaline pyrrole.

scientific article published on September 2010

Direct characterization of protein adducts of the lipid peroxidation product 4-hydroxy-2-nonenal using electrospray mass spectrometry

scientific article published on 01 June 1995

Distortion of trichome morphology by the hairless mutation of tomato affects leaf surface chemistry.

scientific article

DnaC traps DnaB as an open ring and remodels the domain that binds primase.

scientific article

Evidence of Quinone Metabolites of Naphthalene Covalently Bound to Sulfur Nucleophiles of Proteins of Murine Clara Cells after Exposure to Naphthalene ⬇️

scientific article published on September 1, 1997

Evolution of a flipped pathway creates metabolic innovation in tomato trichomes through BAHD enzyme promiscuity

scientific article published on 12 December 2017

Evolutionary routes to biochemical innovation revealed by integrative analysis of a plant-defense related specialized metabolic pathway.

scientific article published on 30 August 2017

Exposure Assessment of Acetamide in Milk, Beef, and Coffee Using Xanthydrol Derivatization and Gas Chromatography/Mass Spectrometry.

scientific article published on 30 November 2017

Femtosecond laser-induced ionization/dissociation of protonated peptides.

scientific article

Formation of cyclic products from the diepoxide of long-chain fatty esters by cytosolic epoxide hydrolase

scientific article published on May 1, 1992

Functional identification of valerena-1,10-diene synthase, a terpene synthase catalyzing a unique chemical cascade in the biosynthesis of biologically active sesquiterpenes in Valeriana officinalis. ⬇️

scientific article published on 14 December 2012

Functionally divergent alleles and duplicated Loci encoding an acyltransferase contribute to acylsugar metabolite diversity in Solanum trichomes

scientific article published on 10 April 2015

Gas chromatographic retention index as a basis for predicting evaporation rates of complex mixtures

scientific article published on 08 September 2014

Gas chromatography of retinol and alpha-tocopherol without derivatization

scientific article published on 01 December 1988

Genetic manipulation of carotenoid biosynthesis in the green sulfur bacterium Chlorobium tepidum

scientific article published on August 2004

Glutathione conjugation with the pyrrolizidine alkaloid, jacobine.

scientific article published in January 1994

Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification

scientific article published on 21 May 2019

Hopanoid lipids compose the Frankia vesicle envelope, presumptive barrier of oxygen diffusion to nitrogenase

scientific article

Human breath analysis: methods for sample collection and reduction of localized background effects.

scientific article published on 22 October 2009

In vitro reconstruction and analysis of evolutionary variation of the tomato acylsucrose metabolic network

scientific article

Inhibition of microbial biofuel production in drought-stressed switchgrass hydrolysate

scientific article (publication date: 2016)

Introducing the USA Plant, Algae and Microbial Metabolomics Research Coordination Network (PAMM-NET)

scientific article published on 20 December 2014

It happened again: Convergent evolution of acylglucose specialized metabolism in black nightshade and wild tomato

scientific article published on 10 November 2021

Large-scale profiling of diterpenoid glycosides from Stevia rebaudiana using ultrahigh performance liquid chromatography/tandem mass spectrometry

scientific article published on 12 May 2012

Laser desorption/ionization time-of-flight mass spectrometry of nitrated polycyclic aromatic hydrocarbons.

scientific article published on July 1996

Lipoyl synthase requires two equivalents of S-adenosyl-L-methionine to synthesize one equivalent of lipoic acid.

scientific article

Liver-specific loss of Perilipin 2 alleviates diet-induced hepatic steatosis, inflammation, and fibrosis.

scientific article published on 11 March 2016

Mealtime, temporal, and daily variability of the human urinary and plasma metabolomes in a tightly controlled environment

scientific article published on 24 January 2014

Medicinal plants: a public resource for metabolomics and hypothesis development.

scientific article

Metabolism of N-nitroso-1,3-thiazolidine in the rat.

scientific article

Metabolism of a sea lamprey pesticide by fish liver enzymes part A: identification and synthesis of TFM metabolites

scientific article published on 28 December 2017

Metabolite Diversity in Alkaloid Biosynthesis: A Multilane (Diastereomer) Highway for Camptothecin Synthesis in Camptotheca acuminata.

scientific article published on 18 July 2016

Metabolomic signatures of coral bleaching history

scientific article published on 09 February 2021

Mining Public Mass Spectrometry Data to Characterize the Diversity and Ubiquity of P. aeruginosa Specialized Metabolites

scientific article published on 05 November 2020

Molecular and biochemical basis for stress-induced accumulation of free and bound p-coumaraldehyde in cucumber

scientific article published on 22 September 2011

Molecular cloning of the tomato Hairless gene implicates actin dynamics in trichome-mediated defense and mechanical properties of stem tissue

scientific article published on 31 July 2016

Multifaceted characterization of cell wall decomposition products formed during ammonia fiber expansion (AFEX) and dilute acid based pretreatments.

scientific article published on 2 July 2010

Mushroom spent straw: a potential substrate for an ethanol-based biorefinery.

scientific article published on 8 January 2008

N-acetylcysteine-conjugated pyrrole identified in rat urine following administration of two pyrrolizidine alkaloids, monocrotaline and senecionine.

scientific article published in November 1990

NMR studies of the thermal degradation of a perfluoropolyether on the surfaces of gamma-alumina and kaolinite

scientific article published on 18 July 2007

Newborn tissue concentrations of bupivacaine following maternal epidural administration during labor in guinea pigs.

scientific article published in October 1998

Nicotine and Its Downstream Metabolites in Maternal and Cord Sera: Biomarkers of Prenatal Smoking Exposure Associated with Offspring DNA Methylation

scientific article published on 20 December 2020

Nuclear factor-kappaB mediated inhibition of cytokine production by imidazoline scaffolds.

scientific article published in March 2009

Obesity, adipokines, and C-peptide are associated with distinct plasma phospholipid profiles in adult males, an untargeted lipidomic approach.

scientific article

Oxidation of a tetrameric nonphenolic lignin model compound by lignin peroxidase.

scientific article published on 13 April 2001

Oxidative damage to plasma constituents by ozone

scientific article published on 01 February 1992

Plastochromanol-8 and tocopherols are essential lipid-soluble antioxidants during seed desiccation and quiescence in Arabidopsis ⬇️

scientific article (publication date: 12 October 2010)

Polymethylated myricetin in trichomes of the wild tomato species Solanum habrochaites and characterization of trichome-specific 3'/5'- and 7/4'-myricetin O-methyltransferases.

scientific article published on 22 February 2011

Presence of Acetamide in Milk and Beef from Cattle Consuming AFEX-Treated Crop Residues

scientific article published on 11 September 2019

Probing the nature of AFEX-pretreated corn stover derived decomposition products that inhibit cellulase activity.

scientific article published in November 2013

Production of bacterial cellulose with controlled deuterium-hydrogen substitution for neutron scattering studies.

scientific article published on 23 October 2015

Profiling of diferulates (plant cell wall cross-linkers) using ultrahigh-performance liquid chromatography-tandem mass spectrometry.

scientific article published in November 2013

Profiling of soluble neutral oligosaccharides from treated biomass using solid phase extraction and LC-TOF MS.

scientific article published on 13 February 2013

Profiling of stable isotope enrichment in specialized metabolites using liquid chromatography and multiplexed nonselective collision-induced dissociation

scientific article published on 23 October 2014

Protease domain glycans affect oligomerization, disulfide bond formation, and stability of the meprin A metalloprotease homo-oligomer.

scientific article published on 13 October 2006

Protein targets of 1,4-benzoquinone and 1,4-naphthoquinone in human bronchial epithelial cells.

scientific article

Purification, mass spectrometric characterization, and covalent modification of murine glutathione S-transferases.

scientific article

Pyruvate Kinase Isoform Switching and Hepatic Metabolic Reprogramming by the Environmental Contaminant 2,3,7,8-Tetrachlorodibenzo-p-Dioxin

scientific article published on 17 November 2015

Quantitative profiling of tissue- and gender-related expression of glutathione S-transferase isoenzymes in the mouse.

scientific article published on July 1997

Rapid LC-MS/MS profiling of protein amino acids and metabolically related compounds for large-scale assessment of metabolic phenotypes

scientific article published on 01 January 2012

Rapid quantification of major reaction products formed during thermochemical pretreatment of lignocellulosic biomass using GC-MS

scientific article published on 09 March 2011

Rapid screening of fentanyl (China White) powder samples by solid-phase radioimmunoassay.

scientific article published in May 1990

Recruitment of a foreign quinone into the A1 site of photosystem I. In vivo replacement of plastoquinone-9 by media-supplemented naphthoquinones in phylloquinone biosynthetic pathway mutants of Synechocystis sp. PCC 6803.

scientific article published on 24 July 2001

Regulation and function of Arabidopsis JASMONATE ZIM-domain genes in response to wounding and herbivory.

scientific article published on 25 January 2008

Relationship of sphinganine analog mycotoxin contamination in maize silage to seasonal weather conditions and to agronomic and ensiling practices.

scientific article

Relative mass defect filtering of mass spectra: a path to discovery of plant specialized metabolites.

scientific article published on 6 February 2015

Roles for jasmonate- and ethylene-induced transcription factors in the ability of Arabidopsis to respond differentially to damage caused by two insect herbivores.

scientific article

Sesquiterpenoid glycosides from glandular trichomes of the wild tomato relative Solanum habrochaites.

scientific article published on 12 December 2013

Solute attributes and molecular interactions contributing to "U-shape" retention on a fluorinated high-performance liquid chromatography stationary phase.

scientific article published in May 2005

Speciation of arsenic oxides using laser desorption/ionization time-of-flight mass spectrometry.

scientific article published on November 1996

Spermidine/spermine-N1-acetyltransferase-2 (SSAT2) acetylates thialysine and is not involved in polyamine metabolism

scientific article

Stable isotope dilution mass spectrometry to assess vitamin A status

scientific article published on 01 January 1990

Stable isotope methods for the study of beta-carotene-d8 metabolism in humans utilizing tandem mass spectrometry and high-performance liquid chromatography.

scientific article

Structural requirements for the biosynthesis of backbone cyclic peptide libraries.

scientific article

Structure elucidation and characterization of polychlorinated biphenyl carboxylic acids as major constituents of chromophoric dissolved organic matter in seawater.

scientific article published in October 2004

Sulindac metabolism and synergy with tumor necrosis factor-alpha in a drug-inflammation interaction model of idiosyncratic liver injury.

scientific article published on 28 July 2009

Switchgrass Metabolomics Reveals Striking Genotypic and Developmental Differences in Specialized Metabolic Phenotypes

scientific article published in 2022

The flavonoid biosynthetic enzyme chalcone isomerase modulates terpenoid production in glandular trichomes of tomato.

scientific article published on 14 January 2014

The non-destructive identification of solid over-the-counter medications using single particle aerosol mass spectrometry

scientific article (publication date: 2007)

The tomato odorless-2 mutant is defective in trichome-based production of diverse specialized metabolites and broad-spectrum resistance to insect herbivores.

scientific article published on 28 July 2010

The use of phenylalanine to detect hydroxyl radical production in vivo: a cautionary note

scientific article published on 01 December 1999

Towards the plant metabolome and beyond.

scientific article published on 10 January 2007

Transcriptional and metabolic signatures of Arabidopsis responses to chewing damage by an insect herbivore and bacterial infection and the consequences of their interaction

scientific article published on 17 September 2014

Transcriptomic and metabolomic analyses of cucumber fruit peels reveal a developmental increase in terpenoid glycosides associated with age-related resistance to Phytophthora capsici

scientific article

Triacylglycerol profiling of microalgae Chlamydomonas reinhardtii and Nannochloropsis oceanica.

scientific article published on 25 July 2013

Tropinone synthesis via an atypical polyketide synthase and P450-mediated cyclization

scientific article published in Nature Communications

Unusual negative charge-directed fragmentation: collision-induced dissociation of cyclopentenone oxylipins in negative ion mode

scientific article published on 01 March 2014

Use of deuterium labelled glucose in evaluating the pathway of hepatic glycogen synthesis

scientific article published on 01 March 1989

Use of single particle aerosol mass spectrometry for the automated nondestructive identification of drugs in multicomponent samples.

scientific article

Using19F NMR Spectroscopy to Determine Trifluralin Binding to Soil

scientific article published in December 2004

Volatile profiling reveals intracellular metabolic changes in Aspergillus parasiticus: veA regulates branched chain amino acid and ethanol metabolism

scientific article

Water-soluble phenolic compounds produced from extractive ammonia pretreatment exerted binary inhibitory effects on yeast fermentation using synthetic hydrolysate.

scientific article published on 15 March 2018

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