Search filters

List of works by Philippe Roumagnac

A Novel Divergent Geminivirus Identified in Asymptomatic New World Cactaceae Plants

scientific article published on 03 April 2020

A Novel Itera-Like Densovirus Isolated by Viral Metagenomics from the Sea Barley Hordeum marinum

scientific article

A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A.

scientific article published on 28 May 2010

Alfalfa Leaf Curl Virus: an Aphid-Transmitted Geminivirus

scientific article

Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites

Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context

scientific article

Capulavirus and Grablovirus: two new genera in the family Geminiviridae

scientific article

Characterization of alfalfa virus F, a new member of the genus Marafivirus

scientific article published in PLoS ONE

Comparison of loop-mediated isothermal amplification, polymerase chain reaction, and selective isolation assays for detection of Xanthomonas albilineans from sugarcane

Complete genome sequences of cowpea polerovirus 1 and cowpea polerovirus 2 infecting cowpea plants in Burkina Faso

scientific article published on 23 March 2017

Discovery of parvovirus-related sequences in an unexpected broad range of animals

scientific article

Diverse and variable virus communities in wild plant populations revealed by metagenomic tools

article

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem

scientific article published on 9 February 2016

Establishment of five new genera in the family Geminiviridae: Citlodavirus, Maldovirus, Mulcrilevirus, Opunvirus, and Topilevirus

scientific article published in 2021

Evolution and ecology of plant viruses

scientific article published on 16 July 2019

Evolution and population structure of Salmonella enterica serovar Newport

scientific article

Exploiting Genetic Information to Trace Plant Virus Dispersal in Landscapes

scientific article

Exploring the diversity of Poaceae-infecting mastreviruses on Reunion Island using a viral metagenomics-based approach

scientific article published on 03 September 2019

First Report of Acidovorax avenae subsp. avenae Causing Sugarcane Red Stripe in Gabon

scientific article published on 01 May 2014

First Report of Alfalfa Leaf Curl Virus Affecting Alfalfa (Medicago sativa) in Jordan, Lebanon, Syria, and Tunisia

First Report of Alfalfa Leaf Curl Virus from Alfalfa in Iran

First Report of Sugarcane Leaf Scald in Gabon Caused by a Highly Virulent and Aggressive Strain of Xanthomonas albilineans

scientific article published on 01 July 2013

First report of Maize yellow mosaic virus infecting maize in Burkina Faso

scholarly article by E. Palanga et al published 11 May 2017 in New disease reports

Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus

scholarly article

From Spatial Metagenomics to Molecular Characterization of Plant Viruses: A Geminivirus Case Study

Genome sequences of a capulavirus infecting Plantago lanceolata in the Åland archipelago of Finland

scientific article published on 10 March 2017

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale

scientific article published on 20 October 2017

High-throughput genotyping of Salmonella enterica serovar Typhi allowing geographical assignment of haplotypes and pathotypes within an urban District of Jakarta, Indonesia

scientific article published on 5 March 2008

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

scientific article published on 27 July 2008

ICTV Virus Taxonomy Profile: Geminiviridae

scientific article

Identification and characterisation of a highly divergent geminivirus: evolutionary and taxonomic implications

scientific article

Identification of novel Bromus- and Trifolium-associated circular DNA viruses

scientific article published on 21 February 2015

Identification of the Begomoviruses Squash Leaf Curl Virus and Watermelon Chlorotic Stunt Virus in Various Plant Samples in North America

scientific article published on 30 April 2021

Increase in taxonomic assignment efficiency of viral reads in metagenomic studies

scientific article published on 14 November 2017

Metagenomic-Based Screening and Molecular Characterization of Cowpea-Infecting Viruses in Burkina Faso

scientific article (publication date: 2016)

Metagenomics Approaches Based on Virion-Associated Nucleic Acids (VANA): An Innovative Tool for Assessing Without A Priori Viral Diversity of Plants

scientific article published on January 2015

Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa

scientific article

Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams

scientific article published on 10 September 2014

Nanopore-based detection and characterization of yam viruses

scientific article published in Scientific Reports

Nanovirus-alphasatellite complex identified in Vicia cracca in the Rhône delta region of France

scientific article

New World Cactaceae Plants Harbor Diverse Geminiviruses

scientific article published on 16 April 2021

New media for the semiselective isolation and enumeration of Xanthomonas campestris pv. mangiferaeindicae, the causal agent of mango bacterial black spot.

scientific article

Notes on recombination and reassortment in multipartite/segmented viruses

Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand

article by Cécile Richet et al published 15 September 2018 in Archives of Virology

Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion

scientific article

Old Foe, New Host: Epidemiology, Genetic Diversity, and Pathogenic Characterization of Maize Streak Virus in Rice Fields from Burkina Faso

scientific article published in 2024

Pathology and viral metagenomics, a recent history

scientific article published on 28 May 2013

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar

scientific article published on 13 September 2011

Plant Virus Metagenomics: Advances in Virus Discovery

scientific article

Polyphasic characterization of Xanthomonas axonopodis pv. allii associated with outbreaks of bacterial blight on three Allium species in the Mascarene archipelago

scientific article published on August 2008

Prevalence of Sugarcane yellow leaf virus in Sugarcane-Producing Regions in Kenya Revealed by Reverse-Transcription Loop-Mediated Isothermal Amplification Method

scientific article published on 25 November 2015

Quantitative and molecular epidemiology of bacterial blight of onion in seed production fields.

scientific article published in December 2006

Recombination in eukaryotic single stranded DNA viruses

scientific article

Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize, and wheat

scientific article (publication date: December 2012)

SNaPshot and CE-SSCP: Two Simple and Cost-Effective Methods to Reveal Genetic Variability Within a Virus Species

scientific article published on January 2015

Salmonella enterica Serotype Typhi with nonclassical quinolone resistance phenotype.

scientific article

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics.

scientific article

Spatial and Temporal Analyses of Bacterial Blight of Onion Caused by Xanthomonas axonopodis pv. allii

scientific article published on 01 February 2004

The Westward Journey of Alfalfa Leaf Curl Virus

scientific article published on 04 October 2018

The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct Badnavirus species.

scientific article published on 15 April 2014

The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed

scientific article

Two novel Alphaflexiviridae members revealed by deep sequencing of the Vanilla (Orchidaceae) virome

scientific article published on September 2017

Viral Metagenomic-Based Screening of Sugarcane from Florida Reveals Occurrence of Six Sugarcane-Infecting Viruses and High Prevalence of Sugarcane yellow leaf virus

article by D. Filloux et al published November 2018 in Plant Disease

Viral Metagenomics Approaches for High-Resolution Screening of Multiplexed Arthropod and Plant Viral Communities.

scientific article

Viral metagenomics and sugarcane pathogens

Virome release of an invasive exotic plant species in southern France

scientific article published in 2024

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

scientific article published in December 2010

Paulina is supported by:

About Paulina

Help