List of works - Alan F Rubin

A Combined Approach Reveals a Regulatory Mechanism Coupling Src's Kinase Activity, Localization, and Phosphotransferase-Independent Functions

scientific article published on 04 April 2019

A statistical framework for analyzing deep mutational scanning data

scientific article published on 07 August 2017

An Atlas of Variant Effects to understand the genome at nucleotide resolution

An open-source platform to distribute and interpret data from multiplexed assays of variant effect

BET inhibitor resistance emerges from leukaemia stem cells

scientific article published on 14 September 2015

Closing the gap: Systematic integration of multiplexed functional data resolves variants of uncertain significance in BRCA1, TP53, and PTEN

Collateral fitness effects of mutations

scientific article published on 08 May 2020

Collateral fitness effects of mutations

Comment on "The consensus coding sequences of human breast and colorectal cancers"

scientific article

Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae

scientific article published on 2 March 2016

Enrich2: a statistical framework for analyzing deep mutational scanning data

scientific article published on 25 September 2016

Expression-based segmentation of the Drosophila genome

scientific article

GA4GH: International policies and standards for data sharing across genomic research and healthcare

scientific article published on 10 November 2021

Genomics 2 Proteins portal: A resource and discovery tool for linking genetic screening outputs to protein sequences and structures

scientific article published on 2 January 2024

Genomics 2 Proteins portal: a resource and discovery tool for linking genetic screening outputs to protein sequences and structures

scientific article published in October 2024

Human and viral membrane–associated E3 ubiquitin ligases MARCH1 and MIR2 recognize different features of CD86 to downregulate surface expression

scientific article published in 2021

Identifying New Hybrid Insulin Peptides (HIPs) in Type 1 Diabetes

Integrating deep mutational scanning and low-throughput mutagenesis data to predict the impact of amino acid variants

MaveDB v2: a curated community database with over three million variant effects from multiplexed functional assays

MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect

scientific article published on 04 November 2019

MaveRegistry: a collaboration platform for multiplexed assays of variant effect

scientific article published in 2021

MaveRegistry: a collaboration platform for multiplexed assays of variant effect

Minimum information and guidelines for reporting a multiplexed assay of variant effect

scientific article published in 2024

Mutation patterns in cancer genomes

scientific article

Novel drivers and modifiers of MPL-dependent oncogenic transformation identified by deep mutational scanning

scientific article published on 01 January 2020

Recommendations for the collection and use of multiplexed functional data for clinical variant interpretation

scientific article published on 20 December 2019

Two of a kind: transmissible Schwann cell cancers in the endangered Tasmanian devil (Sarcophilus harrisii)

scientific article published on 02 August 2019

fqfa: A pure Python package for genomic sequence files

scientific article published on 01 March 2020

List of works by Alan F Rubin

A Combined Approach Reveals a Regulatory Mechanism Coupling Src's Kinase Activity, Localization, and Phosphotransferase-Independent Functions

A statistical framework for analyzing deep mutational scanning data

An Atlas of Variant Effects to understand the genome at nucleotide resolution

An open-source platform to distribute and interpret data from multiplexed assays of variant effect

BET inhibitor resistance emerges from leukaemia stem cells

Closing the gap: Systematic integration of multiplexed functional data resolves variants of uncertain significance in BRCA1, TP53, and PTEN

Collateral fitness effects of mutations

Collateral fitness effects of mutations

Comment on "The consensus coding sequences of human breast and colorectal cancers"

Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae

Enrich2: a statistical framework for analyzing deep mutational scanning data

Expression-based segmentation of the Drosophila genome

GA4GH: International policies and standards for data sharing across genomic research and healthcare

Genomics 2 Proteins portal: A resource and discovery tool for linking genetic screening outputs to protein sequences and structures

Genomics 2 Proteins portal: a resource and discovery tool for linking genetic screening outputs to protein sequences and structures

Human and viral membrane–associated E3 ubiquitin ligases MARCH1 and MIR2 recognize different features of CD86 to downregulate surface expression

Identifying New Hybrid Insulin Peptides (HIPs) in Type 1 Diabetes

Integrating deep mutational scanning and low-throughput mutagenesis data to predict the impact of amino acid variants

MaveDB v2: a curated community database with over three million variant effects from multiplexed functional assays

MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect

MaveRegistry: a collaboration platform for multiplexed assays of variant effect

MaveRegistry: a collaboration platform for multiplexed assays of variant effect

Minimum information and guidelines for reporting a multiplexed assay of variant effect

Mutation patterns in cancer genomes

Novel drivers and modifiers of MPL-dependent oncogenic transformation identified by deep mutational scanning

Recommendations for the collection and use of multiplexed functional data for clinical variant interpretation

Two of a kind: transmissible Schwann cell cancers in the endangered Tasmanian devil (Sarcophilus harrisii)

fqfa: A pure Python package for genomic sequence files