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List of works by Jim Kent

28-way vertebrate alignment and conservation track in the UCSC Genome Browser

scientific article (publication date: December 2007)

A comparative encyclopedia of DNA elements in the mouse genome

scientific article

A distal enhancer and an ultraconserved exon are derived from a novel retroposon

scientific article (publication date: 4 May 2006)

A high-resolution map of human evolutionary constraint using 29 mammals

scientific article

A physical map of the human genome

scientific article

An encyclopedia of mouse DNA elements (Mouse ENCODE).

scientific article

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

scientific article published in June 2007

Analysis of the role of Caenorhabditis elegans GC-AG introns in regulated splicing

scientific article

Assembly of the working draft of the human genome with GigAssembler

scientific article

Assessing computational tools for the discovery of transcription factor binding sites

scientific article

BigWig and BigBed: enabling browsing of large distributed datasets

scientific article

Building a pan-genome reference for a population

scientific article published on 7 January 2015

Centromere reference models for human chromosomes X and Y satellite arrays.

scientific article published on 05 February 2014

Comparative Genomic Analysis Using the UCSC Genome Browser

Comparative genomic analysis using the UCSC genome browser

scientific article published in January 2007

Computational screening of conserved genomic DNA in search of functional noncoding elements

scientific article published in July 2005

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

scientific article

Defining functional DNA elements in the human genome

scientific article

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

scientific article

ENCODE data in the UCSC Genome Browser: year 5 update

scientific article

ENCODE whole-genome data in the UCSC Genome Browser

scientific article

ENCODE whole-genome data in the UCSC Genome Browser: update 2012.

scientific article

ENCODE whole-genome data in the UCSC genome browser (2011 update)

scientific article

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

scientific article

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

scientific article

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

scientific article

Exploring relationships and mining data with the UCSC Gene Sorter

scientific article

Forces shaping the fastest evolving regions in the human genome

scientific article

Galaxy: a platform for interactive large-scale genome analysis

scientific article

Hotspots of mammalian chromosomal evolution

scientific article

Human-mouse alignments with BLASTZ

scientific article

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Identification and classification of conserved RNA secondary structures in the human genome

scientific article

Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001

Initial sequencing and comparative analysis of the mouse genome

scientific article

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

scientific article

Navigating protected genomics data with UCSC Genome Browser in a Box.

scientific article

Ontology application and use at the ENCODE DCC

scientific article

Over 20% of human transcripts might form sense-antisense pairs

scientific article published in 2004

PhenCode: connecting ENCODE data with mutations and phenotype

scientific article

Reconstructing contiguous regions of an ancestral genome

scientific article

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease

scientific article published on August 2014

Retrocopy contributions to the evolution of the human genome

scientific article

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

scientific article

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex

scientific article

The DNA sequence of human chromosome 7

scientific article

The ENCODE Project at UC Santa Cruz

scientific article

The Human Epigenome Browser at Washington University

scientific article

The NIH BD2K center for big data in translational genomics

scientific article

The UCSC Cancer Genomics Browser

scientific article (publication date: April 2009)

The UCSC Cancer Genomics Browser: update 2011

scientific article

The UCSC Ebola Genome Portal

scientific article published on 7 November 2014

The UCSC Genome Browser

scientific article

The UCSC Genome Browser

The UCSC Genome Browser

The UCSC Genome Browser

The UCSC Genome Browser Database

scientific article (publication date: 2003)

The UCSC Genome Browser Database: 2008 update

scientific article (publication date: 2008)

The UCSC Genome Browser Database: update 2009

scientific article

The UCSC Genome Browser database: 2014 update

scientific article

The UCSC Genome Browser database: 2015 update

scientific article

The UCSC Genome Browser database: 2016 update

scientific article

The UCSC Genome Browser database: 2017 update

scientific article

The UCSC Genome Browser database: 2018 update

scientific article published on 2 November 2017

The UCSC Genome Browser database: 2019 update

scientific article published on 01 January 2019

The UCSC Genome Browser database: 2021 update

scientific article published on 22 November 2020

The UCSC Genome Browser database: extensions and updates 2011.

scientific article

The UCSC Genome Browser database: extensions and updates 2013.

scientific article

The UCSC Genome Browser database: update 2010

scientific article (publication date: 2010)

The UCSC Genome Browser database: update 2011

scientific article

The UCSC Known Genes

scientific article

The UCSC Proteome Browser

scientific article

The UCSC SARS-CoV-2 Genome Browser

scientific article published on 05 May 2020

The UCSC SARS-CoV-2 Genome Browser

scientific article published on 09 September 2020

The UCSC genome browser and associated tools ⬇️

scientific article published on August 20, 2012

The UCSC genome browser database: update 2007.

scientific article

The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families

scientific article published on 31 March 2020

The completion of the Mammalian Gene Collection (MGC).

scientific article published on 18 September 2009

The human genome browser at UCSC

scientific article

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)

scientific article

Toil enables reproducible, open source, big biomedical data analyses

scientific article

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser

scientific article

Transcriptome and genome conservation of alternative splicing events in humans and mice.

scientific article

UCSC Data Integrator and Variant Annotation Integrator

scientific article published on 6 January 2016

UCSC Genome Browser enters 20th year

scientific article published on 01 January 2020

UCSC genome browser tutorial

scientific article published on 02 June 2008

Understanding genome browsing

scientific article published in February 2009

Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false positive alignments

scientific article published on 10 July 2015

Variation resources at UC Santa Cruz

scientific article published on 6 December 2006

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