List of works - Guilherme J. M. Rosa

227 Leveraging on high-throughput phenotyping technologies to optimize livestock genetic improvement and husbandry ⬇️

scholarly article

A Bayesian approach for constructing genetic maps when markers are miscoded

scientific article published in May 2002

A Causality Perspective of Genomic Breed Composition for Composite Animals

scientific article published on 30 October 2020

A comprehensive genetic approach for improving prediction of skin cancer risk in humans

scientific article

A powerful and flexible linear mixed model framework for the analysis of relative quantification RT-PCR data

scientific article

A predictive assessment of genetic correlations between traits in chickens using markers.

scientific article

A primer on high-throughput computing for genomic selection

scientific article (publication date: 2011)

Accuracy of Genome-Enabled Prediction in a Dairy Cattle Population using Different Cross-Validation Layouts.

scientific article published on 28 February 2012

An ensemble-based approach to imputation of moderate-density genotypes for genomic selection with application to Angus cattle

scientific article

Application of support vector regression to genome-assisted prediction of quantitative traits

scientific article published on 8 July 2011

Bayesian and Machine Learning Models for Genomic Prediction of Anterior Cruciate Ligament Rupture in the Canine Model

scientific article published on 04 June 2020

Bayesian model averaging for evaluation of candidate gene effects.

scientific article published on 5 January 2010

Breeding and Genetics Symposium: inferring causal effects from observational data in livestock

scientific article

Comparison of classification methods for detecting associations between SNPs and chick mortality

scientific article published on 23 January 2009

Comparison of data analytics strategies in computer vision systems to predict pig body composition traits from 3D images

scientific article published on 08 August 2020

Comparison of models for the genetic evaluation of reproductive traits with censored data in Nellore cattle.

scientific article

Defining window-boundaries for genomic analyses using smoothing spline techniques

scientific article

Differential contribution of genomic regions to marked genetic variation and prediction of quantitative traits in broiler chickens.

scientific article published on 3 February 2016

Economic values of reproductive, growth, feed efficiency and carcass traits in Nellore cattle

scientific article published on 31 October 2021

Effect of genotype imputation on genome-enabled prediction of complex traits: an empirical study with mice data

scientific article

Enviromics in breeding: applications and perspectives on envirotypic-assisted selection

scientific article published on 22 September 2020

Estimation of Genomic Breed Composition for Purebred and Crossbred Animals Using Sparsely Regularized Admixture Models

scientific article published on 11 June 2020

Exploring biological relationships between calving traits in primiparous cattle with a Bayesian recursive model

scientific article

Exploring causal networks of bovine milk fatty acids in a multivariate mixed model context.

scientific article published on 17 January 2014

Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data

scientific article

Generalized additive mixed model on the analysis of total transport losses of market-weight pigs1

scientific article published on 01 April 2019

Genome-Enabled Prediction of Breeding Values for Feedlot Average Daily Weight Gain in Nelore Cattle.

scientific article

Genome-assisted prediction of a quantitative trait measured in parents and progeny: application to food conversion rate in chickens

scientific article published on 5 January 2009

Genome-wide association analysis in dogs implicates 99 loci as risk variants for anterior cruciate ligament rupture

scientific article

Genome-wide association study of milk production traits in a crossbred dairy sheep population using three statistical models

scientific article published on 08 June 2020

Genome-wide linkage analysis of global gene expression in loin muscle tissue identifies candidate genes in pigs

scientific article

Genome-wide scan highlights the role of candidate genes on phenotypic plasticity for age at first calving in Nellore heifers

scientific article published on 15 April 2020

Genomic mating as sustainable breeding for Chinese indigenous Ningxiang pigs

scientific article published on 14 August 2020

Genomic prediction for meat and carcass traits in Nellore cattle using a Markov blanket algorithm

scientific article published in 2022

Genomic prediction of breeding values for carcass traits in Nellore cattle

scientific article published on 29 January 2016

Humble Thanks to a Gentle Giant (an Obituary for James F. Crow).

scientific article

Improving genomic prediction accuracy for meat tenderness in Nellore cattle using artificial neural networks

scientific article published on 05 February 2020

Including Phenotypic Causal Networks in Genome-Wide Association Studies Using Mixed Effects Structural Equation Models

scholarly article by Mehdi Momen et al published 2018 in Frontiers in Genetics

Incorporating parent-of-origin effects in whole-genome prediction of complex traits

scientific article published on 18 April 2016

Inferring causal phenotype networks using structural equation models

scientific article published on 10 February 2011

Inferring phenotypic causal structure among farrowing and weaning traits in pigs

scientific article published on 01 January 2020

Inferring quantitative trait pathways associated with bull fertility from a genome-wide association study.

scientific article published on January 2012

Integration of single nucleotide variants and whole-genome DNA methylation profiles for classification of rheumatoid arthritis cases from controls

scientific article published on 03 March 2020

Investigating causal biological relationships between reproductive performance traits in high-performing gilts and sows1

scientific article published on 01 May 2019

Is structural equation modeling advantageous for the genetic improvement of multiple traits?

scientific article published on 22 April 2013

L2-Boosting algorithm applied to high-dimensional problems in genomic selection.

scientific article

Long-term impacts of genome-enabled selection.

scientific article published on 17 May 2011

Marker-assisted prediction of non-additive genetic values

scientific article

Maternal nutrition induces gene expression changes in fetal muscle and adipose tissues in sheep

scientific article

Meta-analysis of candidate gene effects using bayesian parametric and non-parametric approaches

scientific article published on 2 January 2014

Modeling relationships between calving traits: a comparison between standard and recursive mixed models

scientific article

Multivariate genome-wide association analysis identifies novel and relevant variants associated with anterior cruciate ligament rupture risk in the dog model.

scientific article

Network analysis of swine movements in a multi-site pig production system in Iowa, USA

scientific article published on 20 November 2019

Nonparametric methods for incorporating genomic information into genetic evaluations: an application to mortality in broilers.

scientific article published on April 2008

PSXI-41 Investigating the relationship between life history factors, live animal auction price, and carcass quality of cull dairy cows ⬇️

scholarly article

Parallel Markov chain Monte Carlo - bridging the gap to high-performance Bayesian computation in animal breeding and genetics

scientific article (publication date: 25 September 2012)

Pattern of expression of the uterine milk protein gene and its association with productive life in dairy cattle

scientific article

Predicting complex quantitative traits with Bayesian neural networks: a case study with Jersey cows and wheat

scientific article

Predicting complex traits using a diffusion kernel on genetic markers with an application to dairy cattle and wheat data

scientific article

Predicting expected progeny difference for marbling score in Angus cattle using artificial neural networks and Bayesian regression models

scientific article published on 11 September 2013

Prediction of Plant Height in Arabidopsis thaliana Using DNA Methylation Data

scientific article

Prediction of body mass index in mice using dense molecular markers and a regularized neural network.

scientific article published on 12 April 2011

Predictive ability of genome-assisted statistical models under various forms of gene action

scientific article published in Scientific Reports

Predictive ability of subsets of single nucleotide polymorphisms with and without parent average in US Holsteins

scientific article published on December 2010

Radial basis function regression methods for predicting quantitative traits using SNP markers.

scientific article

Reassessing design and analysis of two-colour microarray experiments using mixed effects models

scientific article published on January 2005

Searching for phenotypic causal networks involving complex traits: an application to European quail

scientific article

Searching for recursive causal structures in multivariate quantitative genetics mixed models

scientific article

Selection signature analyses and genome-wide association reveal genomic hotspot regions that reflect differences between breeds of horse with contrasting risk of degenerative suspensory ligament desmitis

scientific article published in 2022

Selective transcriptional profiling and data analysis strategies for expression quantitative trait loci mapping in outbred F2 populations

scientific article

Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods.

scientific article published in August 2010

Structural equation modeling for investigating multi-trait genetic architecture of udder health in dairy cattle

scientific article published on 08 May 2020

The Causal Meaning of Genomic Predictors and How It Affects Construction and Comparison of Genome-Enabled Selection Models

scientific article published on 23 April 2015

The effect of life history events on carcass merit and price of cull dairy cows

scientific article published on 19 December 2020

The transcriptome of human oocytes

scholarly article

Upregulation of imprinted genes in mice: an insight into the intensity of gene expression and the evolution of genomic imprinting

scientific article

Using dorsal surface for individual identification of dairy calves through 3D deep learning algorithms

scientific article published in 2022

Using multiple regression, Bayesian networks and artificial neural networks for prediction of total egg production in European quails based on earlier expressed phenotypes

scientific article published on 22 February 2015

Would large dataset sample size unveil the potential of deep neural networks for improved genome-enabled prediction of complex traits? The case for body weight in broilers

scientific article published on 09 November 2020

Zero-inflated Poisson regression models for QTL mapping applied to tick-resistance in a Gyr × Holstein F2 population

scientific article published on October 2011

List of works by Guilherme J. M. Rosa

227 Leveraging on high-throughput phenotyping technologies to optimize livestock genetic improvement and husbandry ⬇️

A Bayesian approach for constructing genetic maps when markers are miscoded

A Causality Perspective of Genomic Breed Composition for Composite Animals

A comprehensive genetic approach for improving prediction of skin cancer risk in humans

A powerful and flexible linear mixed model framework for the analysis of relative quantification RT-PCR data

A predictive assessment of genetic correlations between traits in chickens using markers.

A primer on high-throughput computing for genomic selection

Accuracy of Genome-Enabled Prediction in a Dairy Cattle Population using Different Cross-Validation Layouts.

An ensemble-based approach to imputation of moderate-density genotypes for genomic selection with application to Angus cattle

Application of support vector regression to genome-assisted prediction of quantitative traits

Bayesian and Machine Learning Models for Genomic Prediction of Anterior Cruciate Ligament Rupture in the Canine Model

Bayesian model averaging for evaluation of candidate gene effects.

Breeding and Genetics Symposium: inferring causal effects from observational data in livestock

Comparison of classification methods for detecting associations between SNPs and chick mortality

Comparison of data analytics strategies in computer vision systems to predict pig body composition traits from 3D images

Comparison of models for the genetic evaluation of reproductive traits with censored data in Nellore cattle.

Defining window-boundaries for genomic analyses using smoothing spline techniques

Differential contribution of genomic regions to marked genetic variation and prediction of quantitative traits in broiler chickens.

Economic values of reproductive, growth, feed efficiency and carcass traits in Nellore cattle

Effect of genotype imputation on genome-enabled prediction of complex traits: an empirical study with mice data

Enviromics in breeding: applications and perspectives on envirotypic-assisted selection

Estimation of Genomic Breed Composition for Purebred and Crossbred Animals Using Sparsely Regularized Admixture Models

Exploring biological relationships between calving traits in primiparous cattle with a Bayesian recursive model

Exploring causal networks of bovine milk fatty acids in a multivariate mixed model context.

Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data

Generalized additive mixed model on the analysis of total transport losses of market-weight pigs1

Genome-Enabled Prediction of Breeding Values for Feedlot Average Daily Weight Gain in Nelore Cattle.

Genome-assisted prediction of a quantitative trait measured in parents and progeny: application to food conversion rate in chickens

Genome-wide association analysis in dogs implicates 99 loci as risk variants for anterior cruciate ligament rupture

Genome-wide association study of milk production traits in a crossbred dairy sheep population using three statistical models

Genome-wide linkage analysis of global gene expression in loin muscle tissue identifies candidate genes in pigs

Genome-wide scan highlights the role of candidate genes on phenotypic plasticity for age at first calving in Nellore heifers

Genomic mating as sustainable breeding for Chinese indigenous Ningxiang pigs

Genomic prediction for meat and carcass traits in Nellore cattle using a Markov blanket algorithm

Genomic prediction of breeding values for carcass traits in Nellore cattle

Humble Thanks to a Gentle Giant (an Obituary for James F. Crow).

Improving genomic prediction accuracy for meat tenderness in Nellore cattle using artificial neural networks

Including Phenotypic Causal Networks in Genome-Wide Association Studies Using Mixed Effects Structural Equation Models

Incorporating parent-of-origin effects in whole-genome prediction of complex traits

Inferring causal phenotype networks using structural equation models

Inferring phenotypic causal structure among farrowing and weaning traits in pigs

Inferring quantitative trait pathways associated with bull fertility from a genome-wide association study.

Integration of single nucleotide variants and whole-genome DNA methylation profiles for classification of rheumatoid arthritis cases from controls

Investigating causal biological relationships between reproductive performance traits in high-performing gilts and sows1

Is structural equation modeling advantageous for the genetic improvement of multiple traits?

L2-Boosting algorithm applied to high-dimensional problems in genomic selection.

Long-term impacts of genome-enabled selection.

Marker-assisted prediction of non-additive genetic values

Maternal nutrition induces gene expression changes in fetal muscle and adipose tissues in sheep

Meta-analysis of candidate gene effects using bayesian parametric and non-parametric approaches

Modeling relationships between calving traits: a comparison between standard and recursive mixed models

Multivariate genome-wide association analysis identifies novel and relevant variants associated with anterior cruciate ligament rupture risk in the dog model.

Network analysis of swine movements in a multi-site pig production system in Iowa, USA

Nonparametric methods for incorporating genomic information into genetic evaluations: an application to mortality in broilers.

PSXI-41 Investigating the relationship between life history factors, live animal auction price, and carcass quality of cull dairy cows ⬇️

Parallel Markov chain Monte Carlo - bridging the gap to high-performance Bayesian computation in animal breeding and genetics

Pattern of expression of the uterine milk protein gene and its association with productive life in dairy cattle

Predicting complex quantitative traits with Bayesian neural networks: a case study with Jersey cows and wheat

Predicting complex traits using a diffusion kernel on genetic markers with an application to dairy cattle and wheat data

Predicting expected progeny difference for marbling score in Angus cattle using artificial neural networks and Bayesian regression models

Prediction of Plant Height in Arabidopsis thaliana Using DNA Methylation Data

Prediction of body mass index in mice using dense molecular markers and a regularized neural network.

Predictive ability of genome-assisted statistical models under various forms of gene action

Predictive ability of subsets of single nucleotide polymorphisms with and without parent average in US Holsteins

Radial basis function regression methods for predicting quantitative traits using SNP markers.

Reassessing design and analysis of two-colour microarray experiments using mixed effects models

Searching for phenotypic causal networks involving complex traits: an application to European quail

Searching for recursive causal structures in multivariate quantitative genetics mixed models

Selection signature analyses and genome-wide association reveal genomic hotspot regions that reflect differences between breeds of horse with contrasting risk of degenerative suspensory ligament desmitis

Selective transcriptional profiling and data analysis strategies for expression quantitative trait loci mapping in outbred F2 populations

Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods.

Structural equation modeling for investigating multi-trait genetic architecture of udder health in dairy cattle

The Causal Meaning of Genomic Predictors and How It Affects Construction and Comparison of Genome-Enabled Selection Models

The effect of life history events on carcass merit and price of cull dairy cows

The transcriptome of human oocytes

Upregulation of imprinted genes in mice: an insight into the intensity of gene expression and the evolution of genomic imprinting

Using dorsal surface for individual identification of dairy calves through 3D deep learning algorithms

Using multiple regression, Bayesian networks and artificial neural networks for prediction of total egg production in European quails based on earlier expressed phenotypes

Would large dataset sample size unveil the potential of deep neural networks for improved genome-enabled prediction of complex traits? The case for body weight in broilers