List of works - Bertram Ludäscher

A Hybrid Diagnosis Approach Combining Black-Box and White-Box Reasoning

A Model-Based Mediator System for Scientific Data Management

article

A cell-centered database for electron tomographic data

scientific article

A knowledge environment for the biodiversity and ecological sciences

article

Agreeing to disagree: Reconciling conflicting taxonomic views using a logic-based approach

AutoDrug: fully automated macromolecular crystallography workflows for fragment-based drug discovery

scientific article published on 11 April 2013

Automatic Module Detection in Data Cleaning Workflows: Enabling Transparency and Recipe Reuse

journal article from 'International Journal of Digital Curation' published in 2021

Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease

scientific article published on January 2005

Computing environments for reproducibility: Capturing the “Whole Tale”

scientific article published on 10 February 2018

Context, Composition, Automation, and Communication: The C <sup>2</sup> AC Roadmap for Modeling and Simulation

scientific article published on 19 June 2024

Controlling the taxonomic variable: Taxonomic concept resolution for a southeastern United States herbarium portal

scientific article published on 30 September 2016

Cultural Dynamics, Deep Time, and Data

article

Darwin Cloud: Mapping real-world data to Darwin Core

scientific article published in 2017

Data Integration and Workflow Solutions for Ecology

article

Data Mining Research with In-copyright and Use-limited Text Datasets: Preliminary Findings from a Systematic Literature Review and Stakeholder Interviews

scientific article

DataONE: A Data Federation with Provenance Support

Ecological Niche Modeling Using the Kepler Workflow System

Efficient Provenance Storage over Nested Data Collections ⬇️

2009 scientific article

Fitness-for-Use-Framework-aware Data Quality workflows in Kurator

scientific article published in 2017

Golden Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository

scientific article published on 12 March 2012

Guest editors' introduction to the special section on scientific workflows

Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

scientific article

Introducing W.A.T.E.R.S.: a workflow for the alignment, taxonomy, and ecology of ribosomal sequences

scientific article

Kurator: Tools for Improving Fitness for Use of Biodiversity Data.

scientific article published in 2018

Linking multiple workflow provenance traces for interoperable collaborative science

Logic-Based Schema Alignment for Natural History Museum Databases

Managing semistructured data with florid: a deductive object-oriented perspective

Managing semistructured data with florid: a deductive object-oriented perspective (scientific paper)

Merging Sets of Taxonomically Organized Data Using Concept Mappings under Uncertainty

Merging taxonomies under RCC-5 algebraic articulations

Modeling and Querying Scientific Workflow Provenance in the D-OPM

Names are not good enough: Reasoning over taxonomic change in the Andropogon complex1

scientific article published on 11 October 2016

On implementing provenance-aware regular path queries with relational query engines

Provenance Storage, Querying, and Visualization in PBase

scholarly article by Víctor Cuevas-Vicenttín et al published 2015 in Lecture Notes in Computer Science

Provenance for Lattice QCD workflows

scientific article published on 28 April 2023

Provenance-Based Searching and Ranking for Scientific Workflows

Reasoning over taxonomic change: exploring alignments for the Perelleschus use case

scientific article published on 20 February 2015

Report on the EDBT'02 panel on scientific data integration

Revealing the Detailed Lineage of Script Outputs Using Hybrid Provenance

Scientific Process Automation and Workflow Management

Scientific Workflows and Provenance: Introduction and Research Opportunities

Scientific workflow management and the Kepler system

article by Bertram Ludäscher et al published 2006 in Concurrency and Computation: Practice and Experience

Semantic Mediation to Improve Reproducibility for Biomolecular NMR Analysis

article published in 2018

Semantic annotation of mutable data

scientific article (publication date: 2013)

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data

scientific article

Special Issue: The First Provenance Challenge

article

The PBase Scientific Workflow Provenance Repository

The many faces of process interaction graphs: a data management perspective

scientific article

Through the magnifying glass: Exploring aggregations of COVID-19 datasets by county, state, and taxonomies of U.S. regions

scientific article published on 22 October 2020

Towards a federated neuroscientific knowledge management system using brain atlases

Towards a formalization of disease-specific ontologies for neuroinformatics

scientific article

Towards best-effort merge of taxonomically organized data

Trends in Use of Scientific Workflows: Insights from a Public Repository and Recommendations for Best Practice

scientific article published on 23 October 2012

Two Influential Primate Classifications Logically Aligned

scientific article

Understanding Collaborative Studies through Interoperable Workflow Provenance

Using YesWorkflow hybrid queries to reveal data lineage from data curation activities

scientific article published in 2017

Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion

scientific article published on 15 February 2019

Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion

Workflows and Provenance: Toward Information Science Solutions for the Natural Sciences.

scientific article published in January 2017

Workflows for microarray data processing in the Kepler environment

scientific article

List of works by Bertram Ludäscher

A Hybrid Diagnosis Approach Combining Black-Box and White-Box Reasoning

A Model-Based Mediator System for Scientific Data Management

A cell-centered database for electron tomographic data

A knowledge environment for the biodiversity and ecological sciences

Agreeing to disagree: Reconciling conflicting taxonomic views using a logic-based approach

AutoDrug: fully automated macromolecular crystallography workflows for fragment-based drug discovery

Automatic Module Detection in Data Cleaning Workflows: Enabling Transparency and Recipe Reuse

Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease

Computing environments for reproducibility: Capturing the “Whole Tale”

Context, Composition, Automation, and Communication: The C <sup>2</sup> AC Roadmap for Modeling and Simulation

Controlling the taxonomic variable: Taxonomic concept resolution for a southeastern United States herbarium portal

Cultural Dynamics, Deep Time, and Data

Darwin Cloud: Mapping real-world data to Darwin Core

Data Integration and Workflow Solutions for Ecology

Data Mining Research with In-copyright and Use-limited Text Datasets: Preliminary Findings from a Systematic Literature Review and Stakeholder Interviews

DataONE: A Data Federation with Provenance Support

Ecological Niche Modeling Using the Kepler Workflow System

Efficient Provenance Storage over Nested Data Collections ⬇️

Fitness-for-Use-Framework-aware Data Quality workflows in Kurator

Golden Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository

Guest editors' introduction to the special section on scientific workflows

Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

Introducing W.A.T.E.R.S.: a workflow for the alignment, taxonomy, and ecology of ribosomal sequences

Kurator: Tools for Improving Fitness for Use of Biodiversity Data.

Linking multiple workflow provenance traces for interoperable collaborative science

Logic-Based Schema Alignment for Natural History Museum Databases

Managing semistructured data with florid: a deductive object-oriented perspective

Merging Sets of Taxonomically Organized Data Using Concept Mappings under Uncertainty

Merging taxonomies under RCC-5 algebraic articulations

Modeling and Querying Scientific Workflow Provenance in the D-OPM

Names are not good enough: Reasoning over taxonomic change in the Andropogon complex1

On implementing provenance-aware regular path queries with relational query engines

Provenance Storage, Querying, and Visualization in PBase

Provenance for Lattice QCD workflows

Provenance-Based Searching and Ranking for Scientific Workflows

Reasoning over taxonomic change: exploring alignments for the Perelleschus use case

Report on the EDBT'02 panel on scientific data integration

Revealing the Detailed Lineage of Script Outputs Using Hybrid Provenance

Scientific Process Automation and Workflow Management

Scientific Workflows and Provenance: Introduction and Research Opportunities

Scientific workflow management and the Kepler system

Semantic Mediation to Improve Reproducibility for Biomolecular NMR Analysis

Semantic annotation of mutable data

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data

Special Issue: The First Provenance Challenge

The PBase Scientific Workflow Provenance Repository

The many faces of process interaction graphs: a data management perspective

Through the magnifying glass: Exploring aggregations of COVID-19 datasets by county, state, and taxonomies of U.S. regions

Towards a federated neuroscientific knowledge management system using brain atlases

Towards a formalization of disease-specific ontologies for neuroinformatics

Towards best-effort merge of taxonomically organized data

Trends in Use of Scientific Workflows: Insights from a Public Repository and Recommendations for Best Practice

Two Influential Primate Classifications Logically Aligned

Understanding Collaborative Studies through Interoperable Workflow Provenance

Using YesWorkflow hybrid queries to reveal data lineage from data curation activities

Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion

Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion

Workflows and Provenance: Toward Information Science Solutions for the Natural Sciences.

Workflows for microarray data processing in the Kepler environment

YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts