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List of works by Bertram Ludäscher

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Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data

scientific article
Scientific workflow management and the Kepler system

article by Bertram Ludäscher et al published 2006 in Concurrency and Computation: Practice and Experience
A cell-centered database for electron tomographic data

scientific article
Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease

scientific article published on January 2005
Introducing W.A.T.E.R.S.: a workflow for the alignment, taxonomy, and ecology of ribosomal sequences

scientific article
Controlling the taxonomic variable: Taxonomic concept resolution for a southeastern United States herbarium portal

scientific article published on 30 September 2016
AutoDrug: fully automated macromolecular crystallography workflows for fragment-based drug discovery

scientific article published on April 11, 2013
Merging taxonomies under RCC-5 algebraic articulations

Reasoning over Taxonomic Change: Exploring Alignments for the Perelleschus Use Case

scientific article published on February 20, 2015
Two Influential Primate Classifications Logically Aligned

scientific article published on March 22, 2016
Special Issue: The First Provenance Challenge

article
Cultural Dynamics, Deep Time, and Data

article
Towards a formalization of disease-specific ontologies for neuroinformatics

scientific article
Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

scientific article
Semantic annotation of mutable data

scientific article (publication date: 2013)
A knowledge environment for the biodiversity and ecological sciences

article
Workflows for microarray data processing in the Kepler environment

scientific article
YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts

A Model-Based Mediator System for Scientific Data Management

article
Ecological Niche Modeling Using the Kepler Workflow System

Scientific Process Automation and Workflow Management

Managing semistructured data with florid: a deductive object-oriented perspective

Managing semistructured data with florid: a deductive object-oriented perspective (scientific paper)
Linking multiple workflow provenance traces for interoperable collaborative science

The PBase Scientific Workflow Provenance Repository

Scientific Workflows and Provenance: Introduction and Research Opportunities

Data Integration and Workflow Solutions for Ecology

article
Computing environments for reproducibility: Capturing the “Whole Tale”

scientific article published on 10 February 2018
Guest editors' introduction to the special section on scientific workflows

Towards a federated neuroscientific knowledge management system using brain atlases

The many faces of process interaction graphs: a data management perspective

scientific article
Efficient Provenance Storage over Nested Data Collections

2009 scientific article
Understanding Collaborative Studies through Interoperable Workflow Provenance

Data Mining Research with In-copyright and Use-limited Text Datasets: Preliminary Findings from a Systematic Literature Review and Stakeholder Interviews

scientific article
Semantic Mediation to Improve Reproducibility for Biomolecular NMR Analysis

article published in 2018
Provenance-Based Searching and Ranking for Scientific Workflows

Context, Composition, Automation, and Communication: The C <sup>2</sup> AC Roadmap for Modeling and Simulation

scientific article published on 19 June 2024
Provenance for Lattice QCD workflows

scientific article published on 28 April 2023
On implementing provenance-aware regular path queries with relational query engines

Golden Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository

scientific article published on 12 March 2012
A Hybrid Diagnosis Approach Combining Black-Box and White-Box Reasoning

Merging Sets of Taxonomically Organized Data Using Concept Mappings under Uncertainty

Modeling and Querying Scientific Workflow Provenance in the D-OPM

Towards best-effort merge of taxonomically organized data

Automatic Module Detection in Data Cleaning Workflows: Enabling Transparency and Recipe Reuse

journal article from 'International Journal of Digital Curation' published in 2021
Using YesWorkflow hybrid queries to reveal data lineage from data curation activities

scientific article published in 2017
Logic-Based Schema Alignment for Natural History Museum Databases

Revealing the Detailed Lineage of Script Outputs Using Hybrid Provenance

Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion

Darwin Cloud: Mapping real-world data to Darwin Core

scientific article published in 2017
Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion

scientific article published on 15 February 2019

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