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List of works by Ghasem H Salekdeh

17th Chromosome-Centric Human Proteome Project (C-HPP) Symposium in Tehran.

scientific article published on 31 January 2018

200+ Protein Concentrations in Healthy Human Blood Plasma: Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y, and the Mitochondrial Chromosome Encoded Proteome

scientific article published on 11 December 2018

A Proteomics Approach to Discover Drought Tolerance Proteins in Wheat Pollen Grain at Meiosis Stage

scientific article published on 30 November 2016

A generalized machine-learning aided method for targeted identification of industrial enzymes from metagenome: a xylanase temperature dependence case study

scientific article published on 23 October 2020

A genomic catalog of Earth's microbiomes

scientific article published on 09 November 2020

A metagenomic analysis of the camel rumen's microbiome identifies the major microbes responsible for lignocellulose degradation and fermentation

scientific article published on 02 August 2018

A new efficient protocol for directed differentiation of retinal pigmented epithelial cells from normal and retinal disease induced pluripotent stem cells.

scientific article published on 3 February 2012

A novel high performance in-silico screened metagenome-derived alkali-thermostable endo-β-1,4-glucanase for lignocellulosic biomass hydrolysis in the harsh conditions

scientific article published on 19 October 2020

A proteomics approach to study the molecular basis of enhanced salt tolerance in barley (Hordeum vulgare L.) conferred by the root mutualistic fungus Piriformospora indica

scientific article published on 02 April 2013

A proteomics view on the role of drought-induced senescence and oxidative stress defense in enhanced stem reserves remobilization in wheat

scientific article

Advanced glycation end-products produced systemically and by macrophages: A common contributor to inflammation and degenerative diseases

scientific article published on 13 February 2017

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes.

scientific article published on 4 October 2017

Amyloid β Induces Early Changes in the Ribosomal Machinery, Cytoskeletal Organization and Oxidative Phosphorylation in Retinal Photoreceptor Cells

scientific article published on 22 February 2019

An efficient and easy-to-use cryopreservation protocol for human ES and iPS cells.

scientific article

An efficient nano-biocatalyst for lignocellulosic biomass hydrolysis: Xylanase immobilization on organically modified biogenic mesoporous silica nanoparticles

scientific article published on 01 September 2020

An integrated proteomic approach to decipher the effect of methyl jasmonate elicitation on the proteome of Silybum marianum L. hairy roots

scientific article

Application of the immobilized enzyme on magnetic graphene oxide nano-carrier as a versatile bi-functional tool for efficient removal of dye from water

scientific article published on 07 October 2020

Bi-functionalized aminoguanidine-PEGylated periodic mesoporous organosilica nanoparticles: a promising nanocarrier for delivery of Cas9-sgRNA ribonucleoproteine

scientific article published on 31 March 2021

Cellular and molecular characterization of human cardiac stem cells reveals key features essential for their function and safety.

scientific article

Co-abundance analysis reveals hidden players associated with high methane yield phenotype in sheep rumen microbiome

scientific article published on 19 March 2020

Cold acclimation proteome analysis reveals close link between the up-regulation of low-temperature associated proteins and vernalization fulfillment.

scientific article published on 6 October 2010

Comparative SRY incorporation on the regulatory regions of pluripotency/differentiation genes in human embryonic carcinoma cells after retinoic acid induction.

scientific article published on 30 January 2013

Comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance.

scientific article published on 5 November 2014

Comparative proteomic analysis of canola leaves under salinity stress

scientific article published on 08 April 2011

Comparative proteomic analysis of mouse embryonic stem cells and neonatal-derived cardiomyocytes

scientific article published on 5 September 2006

Comparative proteomic analysis of tobacco expressing cyanobacterial flavodoxin and its wild type under drought stress.

scientific article published on 20 November 2014

Complete genome sequence of Oceanimonas sp. GK1, a halotolerant bacterium from Gavkhouni Wetland in Iran.

scientific article published on April 2012

Complete nucleotide sequence of Iranian tomato yellow leaf curl virus isolate: further evidence for natural recombination amongst begomoviruses. Brief Report.

scientific article published on 25 March 2004

Comprehensive gene expression analysis of human embryonic stem cells during differentiation into neural cells

scientific article

Concise review: alchemy of biology: generating desired cell types from abundant and accessible cells

scientific article

Concise review: trends in stem cell proteomics

scientific article published on 10 May 2007

Crop proteomics: aim at sustainable agriculture of tomorrow.

scientific article published on August 2007

DDX3Y, a Male-Specific Region of Y Chromosome Gene, May Modulate Neuronal Differentiation

scientific article

Data in support of comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance

scientific article

Defining microRNA signatures of hair follicular stem and progenitor cells in healthy and androgenic alopecia patients

scientific article published on 06 November 2020

Defining pluripotent stem cells through quantitative proteomic analysis.

scientific article published on February 2011

Direct conversion of human fibroblasts into dopaminergic neural progenitor-like cells using TAT-mediated protein transduction of recombinant factors.

scientific article

Discovery of Novel Cell Surface Markers for Purification of Embryonic Dopamine Progenitors for Transplantation in Parkinson's Disease Animal Models

scientific article published on 29 May 2018

Distinct changes in the proteome profile of endometrial tissues in polycystic ovary syndrome compared with healthy fertile women

scientific article published on 21 April 2018

Distribution and development of molecularly distinct perineuronal nets in visual thalamus

article

Down-Regulation of a Male-Specific H3K4 Demethylase, KDM5D, Impairs Cardiomyocyte Differentiation

scientific article published on 09 October 2019

Draft genome sequence of Nesterenkonia sp. strain F, isolated from Aran-Bidgol Salt Lake in Iran.

scientific article published on October 2011

Draft genome sequence of Ureibacillus thermosphaericus strain thermo-BF, isolated from Ramsar hot springs in Iran.

scientific article published on August 2012

Drought responsive microRNAs in two barley cultivars differing in their level of sensitivity to drought stress

scientific article published on 07 June 2017

Effects of salinity levels on proteome of Suaeda aegyptiaca leaves

scientific article published on 01 April 2006

Effects of selenite and tellurite on growth, physiology, and proteome of a moderately halophilic bacterium.

scientific article

Effects of synbiotic supplementation on breast milk levels of IgA, TGF-β1, and TGF-β2.

scientific article

Efficient differentiation of human embryonic stem cells toward dopaminergic neurons using recombinant LMX1A factor.

scientific article

Elucidation of salt stress defense and tolerance mechanisms of crop plants using proteomics-Current achievements and perspectives ⬇️

scientific article published on June 1, 2013

Ethology of Sunn-pest oviposition in interaction with deltamethrin loaded on mesoporous silica nanoparticles as a nanopesticide

scientific article published on 26 April 2022

Generation of liver disease-specific induced pluripotent stem cells along with efficient differentiation to functional hepatocyte-like cells

scientific article published on December 2010

Guidelines for the use and interpretation of assays for monitoring autophagy

scientific article

Human Proteome Project and Human Pluripotent Stem Cells: Odd Bedfellows or a Perfect Match?

scientific article published on 30 October 2020

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

scientific article published on 30 October 2016

ISL1 protein transduction promotes cardiomyocyte differentiation from human embryonic stem cells

scientific article

Identification and characterization of a novel thermostable xylanase from camel rumen metagenome

scientific article published on 04 December 2018

Identification and validation of Asteraceae miRNAs by the expressed sequence tag analysis

scientific article

Identification of cytoplasmic and membrane-associated complexes in human embryonic stem cells using blue native PAGE.

scientific article published on 5 July 2011

Identification of genes differentially expressed during interaction of Mexican lime tree infected with "Candidatus Phytoplasma aurantifolia".

scientific article published on January 2011

Identification of mouse embryonic stem cell-associated proteins

scientific article published on 30 November 2007

Identification of squamous cell carcinoma associated proteins by proteomics and loss of beta tropomyosin expression in esophageal cancer

scientific article

In-Depth Transcriptome Sequencing of Mexican Lime Trees Infected with Candidatus Phytoplasma aurantifolia.

scientific article published on July 2015

In-depth diversity analysis of the bacterial community resident in the camel rumen

scientific article

Induced neural lineage cells as repair kits: so close, yet so far away.

scientific article published on June 2014

Induced pluripotent stem cells: a new era for hepatology.

scientific article published on 22 June 2010

Induction of Neural Progenitor-Like Cells from Human Fibroblasts via a Genetic Material-Free Approach

scientific article

Inhibition of Human Y Chromosome Gene, SRY, Promotes Naïve State of Human Pluripotent Stem Cells

scientific article published on 15 October 2019

Isoform-Level Gene Expression Profiles of Human Y Chromosome Azoospermia Factor Genes and Their X Chromosome Paralogs in the Testicular Tissue of Non-Obstructive Azoospermia Patients.

scientific article published on 10 July 2015

Launching the C-HPP pilot project for functional characterization of identified proteins with no known function

scientific article published on 29 November 2018

Loss of Shp2 Rescues BDNF/TrkB Signaling and Contributes to Improved Retinal Ganglion Cell Neuroprotection

scientific article published on 04 October 2018

Low Focal Adhesion Signaling Promotes Ground State Pluripotency of Mouse Embryonic Stem Cells.

scientific article published on 29 August 2017

MCIC: Automated Identification of Cellulases From Metagenomic Data and Characterization Based on Temperature and pH Dependence

scientific article published on 23 October 2020

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase.

scientific article

Manipulating root water supply elicits major shifts in the shoot proteome.

scientific article

Metabolic and transcriptional response of central metabolism affected by root endophytic fungus Piriformospora indica under salinity in barley.

scientific article published on 7 March 2016

Metagenomic analysis reveals a dynamic microbiome with diversified adaptive functions to utilize high lignocellulosic forages in the cattle rumen

scientific article published on 01 December 2020

MicroRNA Signatures of Drought Signaling in Rice Root.

scientific article

MicroRNA-340 inhibits the proliferation and promotes the apoptosis of colon cancer cells by modulating REV3L.

scientific article published on 26 December 2017

MicroRNAs regulate the main events in rice drought stress response by manipulating the water supply to shoots.

scientific article published on 5 September 2017

Mining of camel rumen metagenome to identify novel alkali-thermostable xylanase capable of enhancing the recalcitrant lignocellulosic biomass conversion

scientific article published on 12 February 2019

Nesterenkonia sp. strain F, a halophilic bacterium producing acetone, butanol, and ethanol under aerobic conditions

scientific article

Nuclear proteome analysis of monkey embryonic stem cells during differentiation.

scientific article published on 21 January 2010

Physiology and proteome responses of two contrasting rice mutants and their wild type parent under salt stress conditions at the vegetative stage.

scientific article published on 3 October 2013

Phytoplasma-Responsive microRNAs Modulate Hormonal, Nutritional, and Stress Signalling Pathways in Mexican Lime Trees

scientific article

Plant-Microbe Symbiosis: What Has Proteomics Taught Us?

scientific article published on 01 August 2019

PlantPReS: A database for plant proteome response to stress

scientific article published on 03 March 2016

Preconditioning of sperm with sublethal nitrosative stress: a novel approach to improve frozen-thawed sperm function

scientific article published on 08 January 2019

Prospective Isolation of ISL1+ Cardiac Progenitors from Human ESCs for Myocardial Infarction Therapy.

scientific article published on 23 February 2018

Proteome Analysis of Ground State Pluripotency.

scientific article

Proteome analysis of endometrial tissue from patients with PCOS reveals proteins predicted to impact the disease

scientific article published on 24 October 2020

Proteome analysis of post-transplantation recovery mechanisms of an EAE model of multiple sclerosis treated with embryonic stem cell-derived neural precursors.

scientific article

Proteome analysis of sugar beet leaves under drought stress.

scientific article published on March 2005

Proteomic analysis of epithelium-denuded human amniotic membrane as a limbal stem cell niche

scientific article

Proteomic analysis of monkey embryonic stem cell during differentiation.

scientific article

Proteomic analysis of rice anthers under salt stress

article

Proteomic analysis of the Mexican lime tree response to "Candidatus Phytoplasma aurantifolia" infection.

scientific article published on 19 August 2011

Proteomic and metabolomic analysis of desiccation tolerance in wheat young seedlings

scientific article published on 15 November 2019

Proteomic responses of rice young panicles to salinity

scientific article published on 01 December 2006

Proteomic signature of human embryonic stem cells.

scientific article published on June 2006

Proteomics of Important Food Crops in the Asia Oceania Region: Current Status and Future Perspectives

scientific article

Proteomics reveals new salt responsive proteins associated with rice plasma membrane

scientific article

Proteomics study reveals the molecular mechanisms underlying water stress tolerance induced by Piriformospora indica in barley

scientific article published on 11 October 2013

Quantitative proteomic analysis of human embryonic stem cell differentiation by 8-plex iTRAQ labelling

scientific article

Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia.

scientific article published on 14 February 2017

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project

scientific article published on 15 June 2015

Recent Advances of Functional Proteomics in Gastrointestinal Cancers- a Path towards the Identification of Candidate Diagnostic, Prognostic, and Therapeutic Molecular Biomarkers

scientific article published on 12 November 2020

Red/ox states of human protein disulfide isomerase regulate binding affinity of 17 beta-estradiol

scientific article

Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication

scientific article published on 5 June 2015

Salinity-associated microRNAs and their potential roles in mediating salt tolerance in rice colonized by the endophytic root fungus Piriformospora indica

scientific article published on 22 March 2019

Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage

scientific article

Shotgun proteomic analysis of long-distance drought signaling in rice roots.

scientific article

Shotgun proteomic analysis of the Mexican lime tree infected with "CandidatusPhytoplasma aurantifolia".

scientific article published on 7 January 2013

Small RNA Sequencing Reveals Dlk1-Dio3 Locus-Embedded MicroRNAs as Major Drivers of Ground-State Pluripotency.

scientific article published on 7 November 2017

Standard guidelines for the chromosome-centric human proteome project

scientific article published on 26 March 2012

Study of sperm protein profile in men with and without varicocele using two-dimensional gel electrophoresis

scientific article

Subcellular Proteome Landscape of Human Embryonic Stem Cells Revealed Missing Membrane Proteins

scientific article published on 24 September 2018

The Art of validating quantitative proteomics data

scientific article published on 25 November 2018

The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard

scientific article

The Dynamic Proteome of Oligodendrocyte Lineage Differentiation Features Planar Cell Polarity and Macroautophagy Pathways

scientific article published on 01 October 2020

The Quest for Missing Proteins in Rice

scientific article published on 11 December 2018

The contrasting microRNA content of a drought tolerant and a drought susceptible wheat cultivar

scientific article published on 21 May 2017

The effect of Rho-associated kinase inhibition on the proteome pattern of dissociated human embryonic stem cells.

scientific article published on 15 January 2014

The human proteome project: Current state and future direction

scientific article published on 29 April 2011

The quest of cell surface markers for stem cell therapy

scientific article published on 24 July 2020

Transcriptomic analysis of Aegilops tauschii during long-term salinity stress

scientific article published on 21 June 2018

Two Splice Variants of Y Chromosome-Located Lysine-Specific Demethylase 5D Have Distinct Function in Prostate Cancer Cell Line (DU-145).

scientific article published on 28 July 2015

Two-dimensional blue native/SDS-PAGE analysis of whole cell lysate protein complexes of rice in response to salt stress

scientific article published on 22 June 2016

Upregulation of Proteolytic Pathways and Altered Protein Biosynthesis Underlie Retinal Pathology in a Mouse Model of Alzheimer's Disease

scientific article published on 01 February 2019

Whole genome re-sequencing reveals adaptation prior to the divergence of buffalo subspecies

scientific article published on 12 November 2020

Zeolite-based nanocomposite as a smart pH-sensitive nanovehicle for release of xylanase as poultry feed supplement

scientific article published in November 2021

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