List of works - Maksim Kouza

A numerical investigation into possible mechanisms by that the A629P mutant of ATP7A causes Menkes Disease

scientific article published on 16 August 2010

A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain

scientific article published in August 2013

A topological order parameter for describing folding free energy landscapes of proteins

scientific article published on 01 November 2018

Coarse-Grained Modeling of Protein Dynamics

scientific article published in 2014

Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics.

scientific article published on 10 May 2013

Dependence of protein mechanical unfolding pathways on pulling speeds.

scientific article published in April 2009

Effect of finite size on cooperativity and rates of protein folding.

scientific article published in January 2006

Explicit-Solvent All-Atom Molecular Dynamics of Peptide Aggregation

scientific article published on 29 November 2018

Fast and Accurate Accessible Surface Area Prediction Without a Sequence Profile

scientific article

Folding of the protein domain hbSBD

scientific article

From coarse-grained to atomic-level characterization of protein dynamics: transition state for the folding of B domain of protein A

scientific article published on 19 April 2012

Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational study

scientific article published on 01 June 2018

Mechanical unfolding of acylphosphatase studied by single-molecule force spectroscopy and MD simulations.

scientific article published on July 2010

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models ⬇️

scientific article published on 06 November 2018

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-grained Simulations and Elastic Network Models

scientific article published on 15 October 2018

Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.

scientific article published on 9 July 2015

Oligomerization of FVFLM peptides and their ability to inhibit beta amyloid peptides aggregation: consideration as a possible model.

scientific article published on 12 January 2017

Preformed template fluctuations promote fibril formation: insights from lattice and all-atom models.

scientific article

Protein Dynamics Simulations Using Coarse-Grained Models

scientific article published on 29 November 2018

Protein mechanical unfolding: Importance of non-native interactions

article

Role of Resultant Dipole Moment in Mechanical Dissociation of Biological Complexes

scientific article published on 10 August 2018

Switch from thermal to force-driven pathways of protein refolding.

scientific article published on April 2017

The GOR Method of Protein Secondary Structure Prediction and Its Application as a Protein Aggregation Prediction Tool.

scientific article published in January 2017

List of works by Maksim Kouza

A numerical investigation into possible mechanisms by that the A629P mutant of ATP7A causes Menkes Disease

A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain

A topological order parameter for describing folding free energy landscapes of proteins

Coarse-Grained Modeling of Protein Dynamics

Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics.

Dependence of protein mechanical unfolding pathways on pulling speeds.

Effect of finite size on cooperativity and rates of protein folding.

Explicit-Solvent All-Atom Molecular Dynamics of Peptide Aggregation

Fast and Accurate Accessible Surface Area Prediction Without a Sequence Profile

Folding of the protein domain hbSBD

From coarse-grained to atomic-level characterization of protein dynamics: transition state for the folding of B domain of protein A

Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational study

Mechanical unfolding of acylphosphatase studied by single-molecule force spectroscopy and MD simulations.

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models ⬇️

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-grained Simulations and Elastic Network Models

Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.

Oligomerization of FVFLM peptides and their ability to inhibit beta amyloid peptides aggregation: consideration as a possible model.

Preformed template fluctuations promote fibril formation: insights from lattice and all-atom models.

Protein Dynamics Simulations Using Coarse-Grained Models

Protein mechanical unfolding: Importance of non-native interactions

Role of Resultant Dipole Moment in Mechanical Dissociation of Biological Complexes

Switch from thermal to force-driven pathways of protein refolding.

The GOR Method of Protein Secondary Structure Prediction and Its Application as a Protein Aggregation Prediction Tool.

Universal geometrical factor of protein conformations as a consequence of energy minimization