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List of works by Shinji Saito

A novel method for analyzing energy relaxation in condensed phases using nonequilibrium molecular dynamics simulations: application to the energy relaxation of intermolecular motions in liquid water

scientific article published on 01 May 2011

A theoretical study on anomalous temperature dependence of pKw of water

scientific article published on 01 April 2005

Anisotropic cooperative structural rearrangements in sheared supercooled liquids

scientific article published on 09 January 2009

Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock

scientific article

Conformational Excitation and Nonequilibrium Transition Facilitate Enzymatic Reactions: Application to Pin1 Peptidyl-Prolyl Isomerase

scientific article published on 17 January 2019

Correction to "Site-Dependent Fluctuations Optimize Electronic Energy Transfer in the Fenna-Matthews-Olson Protein"

scientific article published on 16 December 2019

Couplings between hierarchical conformational dynamics from multi-time correlation functions and two-dimensional lifetime spectra: Application to adenylate kinase.

scientific article published in June 2015

Crucial role of fragmented and isolated defects in persistent relaxation of deeply supercooled water

scientific article published on 01 September 2018

Dynamic heterogeneity in the folding/unfolding transitions of FiP35.

scientific article published on April 2015

Dynamic length scales in glass-forming liquids: an inhomogeneous molecular dynamics simulation approach.

scientific article published on 24 July 2013

Effects of nonadditive interactions on ion solvation at the water/vapor interface: a molecular dynamics study

scientific article published on 15 November 2010

Energy relaxation of intermolecular motions in supercooled water and ice: A molecular dynamics study ⬇️

scientific article published on December 28, 2011

Fifth-order two-dimensional Raman spectroscopy of liquid water, crystalline ice Ih and amorphous ices: sensitivity to anharmonic dynamics and local hydrogen bond network structure

scientific article published on 01 August 2006

Fluctuations and relaxation dynamics of liquid water revealed by linear and nonlinear spectroscopy.

scientific article published on 05 December 2012

Frequency dependence of specific heat in supercooled liquid water and emergence of correlated dynamics.

scientific article published in March 2013

Intermolecular vibrational mode of the benzoic acid dimer in solution observed by terahertz time-domain spectroscopy

scientific article published on 11 July 2011

Mechanism of ion permeation in a model channel: Free energy surface and dynamics of K+ ion transport in an anion-doped carbon nanotube

scientific article published on 01 October 2006

Mechanism of ion permeation through a model channel: roles of energetic and entropic contributions

scientific article

Molecular Mechanism Behind the Fast Folding/Unfolding Transitions of Villin Headpiece Subdomain: Hierarchy and Heterogeneity.

scientific article

Molecular Mechanism of Acceleration and Retardation of Collective Orientation Relaxation of Water Molecules in Aqueous Solutions

scientific article published on 15 December 2020

Molecular dynamics simulation of the ice nucleation and growth process leading to water freezing

scientific article published in Nature

Molecular origin of the difference in the HOH bend of the IR spectra between liquid water and ice

scientific article published on 01 February 2013

Multi-time density correlation functions in glass-forming liquids: Probing dynamical heterogeneity and its lifetime

scientific article published on 01 July 2010

Multimeric structure enables the acceleration of KaiB-KaiC complex formation induced by ADP/ATP exchange inhibition

scientific article published on 07 March 2022

Multiple length and time scales of dynamic heterogeneities in model glass-forming liquids: a systematic analysis of multi-point and multi-time correlations.

scientific article published in March 2013

Multiple time scales hidden in heterogeneous dynamics of glass-forming liquids

scientific article published on 12 June 2009

Off-resonant fifth-order response function for two-dimensional Raman spectroscopy of liquids CS2 and H2O.

scientific article published on 30 April 2002

Proton transfer and associated molecular rearrangements in the photocycle of photoactive yellow protein: role of water molecular migration on the proton transfer reaction

scientific article published on 27 February 2007

Quantitative Evaluation of Site Energies and Their Fluctuations of Pigments in the Fenna-Matthews-Olson Complex with an Efficient Method for Generating a Potential Energy Surface

scientific article published on 6 July 2016

Reconsideration of the relaxational and vibrational line shapes of liquid water based on ultrabroadband dielectric spectroscopy

article

Relation between the conformational heterogeneity and reaction cycle of Ras: molecular simulation of Ras.

scientific article published on December 2010

Site-Dependent Fluctuations Optimize Electronic Energy Transfer in the Fenna-Matthews-Olson Protein

scientific article published on 12 November 2019

Structure and dynamics of solvent molecules inside the polytheonamide B channel in different environments: a molecular dynamics study.

scientific article

Temperature dependence of vibrational frequency fluctuation of N(3) (-) in D(2)O

scientific article published on 01 July 2010

Theoretical and experimental studies on vibrational energy relaxation of the CO stretching mode of acetone in alcohol solutions

scientific article published on 23 January 2013

Theoretical study on excited states of bacteriochlorophyll a in solutions with density functional assessment

scientific article published on 04 September 2014

Theory of coherent two-dimensional vibrational spectroscopy

scientific article published on 01 March 2019

Thermodynamic picture of vitrification of water through complex specific heat and entropy: A journey through "no man's land"

scientific article published on 01 February 2019

Ultrafast Dynamics of Liquid Water: Energy Relaxation and Transfer Processes of the OH Stretch and the HOH Bend.

scientific article published on 16 June 2015

Ultrafast dynamics of liquid water: frequency fluctuations of the OH stretch and the HOH bend

scientific article published on 01 July 2013

Ultrafast energy relaxation and anisotropy decay of the librational motion in liquid water: A molecular dynamics study

scientific article published on 01 October 2009

Ultrafast intermolecular dynamics of liquid water: a theoretical study on two-dimensional infrared spectroscopy

scientific article published on 01 April 2008

Vibrational Frequency Fluctuation of Ions in Aqueous Solutions Studied by Three-Pulse Infrared Photon Echo Method ⬇️

scientific article published on October 30, 2012

Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction

scientific article published on 29 June 2020

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