List of works - Jeremy M. Berg

A Perspective on Implementing a Quantitative Systems Pharmacology Platform for Drug Discovery and the Advancement of Personalized Medicine.

scientific article published on 08 March 2016

A detailed study of the substrate specificity of a chimeric restriction enzyme.

scientific article published on January 1999

A direct comparison of the properties of natural and designed zinc-finger proteins

scientific article published on 01 February 1995

A family analysis

scientific article published in Science

A proteome-wide perspective on peroxisome targeting signal 1(PTS1)-Pex5p affinities

scientific article

A short presidential reading list

scientific article published in Science

Addendum to "Editorial Retraction of the Report 'Environmentally relevant concentrations of microplastic particles influence larval fish ecology,' by O. M. Lönnstedt and P. Eklöv".

scientific article published in December 2017

As others see us: accomplishments over 25 years reflect the symbiotic link between biology and chemistry.

scientific article published in April 2001

Awesome universal chirp

scientific article published in Science

Benefits of steady growth

scientific article published in Science

Binding assays get into the groove.

scientific article

Binding of two zinc finger nuclease monomers to two specific sites is required for effective double-strand DNA cleavage

scientific article

Building a metal binding domain, one half at a time.

scientific article

Cancer Yield and Patterns of Follow-up for BI-RADS Category 3 after Screening Mammography Recall in the National Mammography Database

scientific article published on 19 May 2020

Centrosymmetric crystals of biomolecules: the racemate method.

scientific article

DNA binding specificity of steroid receptors.

scientific article

DNA unwinding induced by zinc finger protein binding.

scientific article

Data in public health

scientific article published in February 2017

Design of single-stranded nucleic acid binding peptides based on nucleocapsid CCHC-box zinc-binding domains.

scientific article

Editor's note

scientific article published in Science

Editorial expression of concern

scientific article published in Science

Editorial expression of concern.

scientific article published on 14 September 2017

Electrostatic Interactions across a β-Sheet†

scientific article published on 01 May 1997

Entropy−Enthalpy Compensation in Ionic Interactions Probed in a Zinc Finger Peptide†

scientific article published on 01 August 2004

Erratum

scientific article published on 01 July 1992

Everyone should try

scientific article published in Science

Fibrillin domain folding and calcium binding: significance to Marfan syndrome

scientific article published on 01 February 1995

Fingering nucleic acids: the RNA did it

scientific article published on 01 December 2003

Gene-environment interplay.

scientific article

Gramicidin A crystals contain two cation binding sites per channel ⬇️

scientific article published on June 21, 1979

Identification and characterization of "zinc-finger" domains by the polymerase chain reaction.

scientific article published on January 1991

JIFfy Pop

scientific article published in Science

Length-encoded multiplex binding site determination: application to zinc finger proteins

scientific article published in November 1994

Lessons from zinc-binding peptides ⬇️

scientific article published on January 1, 1997

Looking inward at gender issues.

scientific article published in January 2017

March for science.

scientific article

Measuring and managing bias

scientific article published in September 2017

Metal and DNA binding properties of a two-domain fragment of neural zinc finger factor 1, a CCHC-type zinc binding protein

scientific journal article

Metal binding and folding properties of a minimalist Cys2His2 zinc finger peptide ⬇️

scientific article published on June 1, 1992

Metal ion affinities of the zinc finger domains of the metal responsive element-binding transcription factor-1 (MTF1).

scientific article

National Centers for Biomedical Computing: from the BISTI report to the future.

scientific article published on 18 January 2012

Needs Assessment for Research Use of High-Throughput Sequencing at a Large Academic Medical Center

scientific article published on 26 June 2015

Pex5p binding affinities for canonical and noncanonical PTS1 peptides.

scientific article

Preprint ecosystems

scientific article published in Science

Preprints for the life sciences ⬇️

scientific article

Progress on reproducibility

scientific article published in January 2018

Pushing the boundaries: Science Advances.

scientific article published on 7 June 2017

Quantitative Analysis of Peroxisomal Targeting Signal Type-1 Binding to Wild-type and Pathogenic Mutants of Pex5p Supports an Affinity Threshold for Peroxisomal Protein Targeting

article

Racemic macromolecules for use in X-ray crystallography.

scientific article published on August 1994

Reduction in DNA-binding affinity of Cys2His2 zinc finger proteins by linker phosphorylation.

scholarly article

Research in academic medical centers: two threats to sustainable support.

scientific article published in May 2015

Response to: "Rescuing the NIH before it is too late".

scientific article published on June 2006

Retraction: The protein LEM promotes CD8⁺ T cell immunity through effects on mitochondrial respiration

retraction notice

Reunifying America

scientific article published in Science

Science of preparedness.

scientific article

Science policy: Well-funded investigators should receive extra scrutiny.

scientific article published on September 2012

Science's rightful place

scientific article

Science, big and small

scientific article

Scientific approaches to science policy.

scientific article

Secondary interactions involving zinc-bound ligands: Roles in structural stabilization and macromolecular interactions ⬇️

scientific article published on December 1, 2011

Selective RNA Binding by a Single CCCH Zinc-Binding Domain from Nup475 (Tristetraprolin) ⬇️

scientific article published on April 29, 2003

Sequential Metal Binding by the RING Finger Domain of BRCA1†

scientific article published on 01 August 1997

Serine at Position 2 in the DNA Recognition Helix of a Cys2-His2Zinc Finger Peptide is Not, in General, Responsible for Base Recognition

scientific article published on 01 September 1995

Shortsighted priorities

scientific article

Site selection in tandem arrays of metal-binding domains.

scientific article published in December 2004

Site-specific cleavage of DNA–RNA hybrids by zinc finger/FokI cleavage domain fusions

scientific article published on 01 December 1997

Sp1 and the subfamily of zinc finger proteins with guanine-rich binding sites ⬇️

scientific article published on December 1, 1992

Structure-based thermodynamic analysis of a coupled metal binding-protein folding reaction involving a zinc finger peptide.

scientific article published in December 2002

Systems biology and pharmacology

scientific article published in July 2010

TCGA Expedition: A Data Acquisition and Management System for TCGA Data

scientific article

Tax plans and science.

scientific article published on 7 December 2017

The center for causal discovery of biomedical knowledge from big data

scientific article

The communities of Science

scientific article

The design of functional DNA-binding proteins based on zinc finger domains.

scientific article published on February 2004

Thermodynamic beta-sheet propensities measured using a zinc-finger host peptide.

scientific article published in March 1993

Toward Ligand Identification within a CCHHC Zinc-Binding Domain from the NZF/MyT1 Family

scientific article published on 01 January 2000

Toward a sustainable biomedical research enterprise: Finding consensus and implementing recommendations

scientific article

Training the Workforce for 21st-Century Science.

scientific article

What to Expect From the Pharmacogenomics Research Network

scientific article published on 01 March 2011

Zinc Fingers in Caenorhabditis elegans: Finding Families and Probing Pathways

scientific article

List of works by Jeremy M. Berg

A Perspective on Implementing a Quantitative Systems Pharmacology Platform for Drug Discovery and the Advancement of Personalized Medicine.

A detailed study of the substrate specificity of a chimeric restriction enzyme.

A direct comparison of the properties of natural and designed zinc-finger proteins

A family analysis

A proteome-wide perspective on peroxisome targeting signal 1(PTS1)-Pex5p affinities

A short presidential reading list

Addendum to "Editorial Retraction of the Report 'Environmentally relevant concentrations of microplastic particles influence larval fish ecology,' by O. M. Lönnstedt and P. Eklöv".

As others see us: accomplishments over 25 years reflect the symbiotic link between biology and chemistry.

Awesome universal chirp

Benefits of steady growth

Binding assays get into the groove.

Binding of two zinc finger nuclease monomers to two specific sites is required for effective double-strand DNA cleavage

Building a metal binding domain, one half at a time.

Cancer Yield and Patterns of Follow-up for BI-RADS Category 3 after Screening Mammography Recall in the National Mammography Database

Centrosymmetric crystals of biomolecules: the racemate method.

DNA binding specificity of steroid receptors.

DNA unwinding induced by zinc finger protein binding.

Data in public health

Design of single-stranded nucleic acid binding peptides based on nucleocapsid CCHC-box zinc-binding domains.

Editor's note

Editorial expression of concern

Editorial expression of concern.

Electrostatic Interactions across a β-Sheet†

Entropy−Enthalpy Compensation in Ionic Interactions Probed in a Zinc Finger Peptide†

Erratum

Everyone should try

Fibrillin domain folding and calcium binding: significance to Marfan syndrome

Fingering nucleic acids: the RNA did it

Gene-environment interplay.

Gramicidin A crystals contain two cation binding sites per channel ⬇️

Identification and characterization of "zinc-finger" domains by the polymerase chain reaction.

JIFfy Pop

Length-encoded multiplex binding site determination: application to zinc finger proteins

Lessons from zinc-binding peptides ⬇️

Looking inward at gender issues.

March for science.

Measuring and managing bias

Metal and DNA binding properties of a two-domain fragment of neural zinc finger factor 1, a CCHC-type zinc binding protein

Metal binding and folding properties of a minimalist Cys2His2 zinc finger peptide ⬇️

Metal ion affinities of the zinc finger domains of the metal responsive element-binding transcription factor-1 (MTF1).

National Centers for Biomedical Computing: from the BISTI report to the future.

Needs Assessment for Research Use of High-Throughput Sequencing at a Large Academic Medical Center

Pex5p binding affinities for canonical and noncanonical PTS1 peptides.

Preprint ecosystems

Preprints for the life sciences ⬇️

Progress on reproducibility

Pushing the boundaries: Science Advances.

Quantitative Analysis of Peroxisomal Targeting Signal Type-1 Binding to Wild-type and Pathogenic Mutants of Pex5p Supports an Affinity Threshold for Peroxisomal Protein Targeting

Racemic macromolecules for use in X-ray crystallography.

Reduction in DNA-binding affinity of Cys2His2 zinc finger proteins by linker phosphorylation.

Research in academic medical centers: two threats to sustainable support.

Response to: "Rescuing the NIH before it is too late".

Retraction: The protein LEM promotes CD8⁺ T cell immunity through effects on mitochondrial respiration

Reunifying America

Science of preparedness.

Science policy: Well-funded investigators should receive extra scrutiny.

Science's rightful place

Science, big and small

Scientific approaches to science policy.

Secondary interactions involving zinc-bound ligands: Roles in structural stabilization and macromolecular interactions ⬇️

Selective RNA Binding by a Single CCCH Zinc-Binding Domain from Nup475 (Tristetraprolin) ⬇️

Sequential Metal Binding by the RING Finger Domain of BRCA1†

Serine at Position 2 in the DNA Recognition Helix of a Cys2-His2Zinc Finger Peptide is Not, in General, Responsible for Base Recognition

Shortsighted priorities

Site selection in tandem arrays of metal-binding domains.

Site-specific cleavage of DNA–RNA hybrids by zinc finger/FokI cleavage domain fusions

Sp1 and the subfamily of zinc finger proteins with guanine-rich binding sites ⬇️

Structure-based thermodynamic analysis of a coupled metal binding-protein folding reaction involving a zinc finger peptide.

Systems biology and pharmacology

TCGA Expedition: A Data Acquisition and Management System for TCGA Data

Tax plans and science.

The center for causal discovery of biomedical knowledge from big data

The communities of Science

The design of functional DNA-binding proteins based on zinc finger domains.

Thermodynamic beta-sheet propensities measured using a zinc-finger host peptide.

Toward Ligand Identification within a CCHHC Zinc-Binding Domain from the NZF/MyT1 Family

Toward a sustainable biomedical research enterprise: Finding consensus and implementing recommendations

Training the Workforce for 21st-Century Science.

What to Expect From the Pharmacogenomics Research Network