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List of works by Mang Shi

A Divergent Hepatitis D-Like Agent in Birds

scientific article published on 17 December 2018

A Diverse Range of Novel RNA Viruses in Geographically Distinct Honey Bee Populations.

scientific article published on 17 May 2017

A Novel Hepadnavirus Identified in an Immunocompromised Domestic Cat in Australia.

scientific article published on 17 May 2018

A comprehensive evolutionary and epidemiological characterization of insertion and deletion mutations in SARS-CoV-2 genomes

publication published on 13 December 2021

A divergent hepatitis D-like agent in birds

scientific article published on 23 September 2018

A new lineage of segmented RNA viruses infecting animals

scientific article published on 17 January 2020

A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors

scientific article published on 21 April 2014

A time-series meta-transcriptomic analysis reveals the seasonal, host, and gender structure of mosquito viromes

scientific article published on 02 February 2022

Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)

scientific article published in 2023

Author Correction: The evolutionary history of vertebrate RNA viruses

scientific article published in Nature

Characterisation of the faecal virome of captive and wild Tasmanian devils using virus-like particles metagenomics and meta-transcriptomics

scientific article published on 15 October 2018

Characterization of the Gut Microbiome and Resistomes of Wild and Zoo-Captive Macaques

scientific article published on 01 January 2021

Characterizing the virome of Ixodes ricinus ticks from northern Europe.

scientific article published on 7 September 2017

Comparative analysis of RNA virome composition in rabbits and associated ectoparasites

scientific article published on 18 March 2020

Complete genome of Aedes aegypti anphevirus in the Aag2 mosquito cell line.

scientific article

Dinucleotide Composition in Animal RNA Viruses Is Shaped More by Virus Family than by Host Species

scientific article published in February 2017

Discovery and Prevalence of Divergent RNA Viruses in European Field Voles and Rabbits

scientific article published on 31 December 2019

Discovery of diverse polyomaviruses in bats and the evolutionary history of the Polyomaviridae

scientific article published on 12 December 2012

Discovery, diversity and evolution of novel coronaviruses sampled from rodents in China

scientific article published on 9 November 2014

Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses

scientific article published in January 2016

Diversity and Evolution of Novel Invertebrate DNA Viruses Revealed by Meta-Transcriptomics

scientific article published on 25 November 2019

Diversity and evolution of avian influenza viruses in live poultry markets, free-range poultry and wild wetland birds in China.

scientific article published on 12 January 2016

Diversity, evolution and population dynamics of avian influenza viruses circulating in the live poultry markets in China

scientific article published on 18 February 2017

Evolution of Termite Symbiosis Informed by Transcriptome-Based Phylogenies

scientific article published on 17 October 2019

Evolutionary conservation of the PA-X open reading frame in segment 3 of influenza A virus

scientific article published on 5 September 2012

Evolutionary diversification of type 2 porcine reproductive and respiratory syndrome virus

scientific article

Evolutionary history and phylogeography of rabies viruses associated with outbreaks in Trinidad

scientific article

Extensive Diversity of RNA Viruses in Australian Ticks

scientific article published on 7 August 2018

Extensive Diversity of RNA Viruses in Australian Ticks

scholarly article by Erin Harvey et al published 7 November 2018 in Journal of Virology

Extensive diversity of Rickettsiales bacteria in two species of ticks from China and the evolution of the Rickettsiales

scientific article published on 30 July 2014

Fecal Viral Diversity of Captive and Wild Tasmanian Devils Characterized Using Virion-Enriched Metagenomics and Metatranscriptomics

scientific article published on 15 May 2019

Feline Calicivirus Virulent Systemic Disease: Clinical Epidemiology, Analysis of Viral Isolates and In Vitro Efficacy of Novel Antivirals in Australian Outbreaks

scientific article published on 11 October 2021

Fourteen types of co-circulating recombinant enterovirus were associated with hand, foot, and mouth disease in children from Wenzhou, China

scientific article published on 2 July 2015

Francisella tularensis ssp. holarctica in Ringtail Possums, Australia

scientific article

Genetic characterization and evolutionary analysis of 4 Newcastle disease virus isolate full genomes from waterbirds in South China during 2003-2007.

scientific article published on 22 April 2011

Genomic characterization of emergent pseudorabies virus in China reveals marked sequence divergence: Evidence for the existence of two major genotypes

scientific article published on 15 May 2015

Genomic characterization of seven distinct bat coronaviruses in Kenya

scientific article

Genomic evolution of porcine reproductive and respiratory syndrome virus (PRRSV) isolates revealed by deep sequencing

scientific article

Hidden diversity and evolution of viruses in market fish

scientific article published on 01 July 2018

High levels of antibiotic resistance gene expression among birds living in a wastewater treatment plant

scholarly article published 5 November 2018

High resolution metagenomic characterization of complex infectomes in paediatric acute respiratory infection

scientific article published on 03 March 2020

High-Resolution Metatranscriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia

scientific article published on 21 June 2017

Identification of A Novel Papillomavirus Associated with Squamous Cell Carcinoma in A Domestic Cat

scientific article published on 20 January 2020

Identification of Novel Astroviruses in the Gastrointestinal Tract of Domestic Cats

scientific article published on 12 November 2020

Identification of novel and diverse rotaviruses in rodents and insectivores, and evidence of cross-species transmission into humans

scientific article published on 22 April 2016

Importation and Recombination Are Responsible for the Latest Emergence of Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus in China

scientific article

Isolation and characterization of a novel arenavirus harbored by Rodents and Shrews in Zhejiang province, China

scientific article published on 12 December 2014

Meta-Transcriptomic Comparison of the RNA Viromes of the Mosquito Vectors Culex pipiens and Culex torrentium in Northern Europe

scientific article published on 06 November 2019

Meta-Transcriptomic Identification of Divergent Amnoonviridae in Fish

scientific article published on 04 November 2020

Meta-transcriptomic analysis of virus diversity in urban wild birds with paretic disease

scientific article published on 24 June 2020

Meta-transcriptomics and the evolutionary biology of RNA viruses

scientific article published on 27 October 2017

Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes

article

Metagenomic discovery and co-infection of diverse wobbly possum disease viruses and a novel hepacivirus in Australian brushtail possums

scientific article published on 01 January 2019

Molecular epidemiology of PRRSV: a phylogenetic perspective

scientific article published on 15 September 2010

New world bats harbor diverse influenza A viruses

scientific article published in 2013

No detectable effect of Mel on the prevalence and abundance of the RNA virome of

scientific article published on 25 July 2018

Novel hepaci- and pegi-like viruses in native Australian wildlife and non-human primates

scientific article published on 01 July 2020

Novel hepatitis D-like agents in vertebrates and invertebrates

Novel hepatitis D-like agents in vertebrates and invertebrates

scientific article published on 15 July 2019

Phylodynamics of H5N1 avian influenza virus in Indonesia

scientific article published on 11 May 2012

Phylogenetic evidence for homologous recombination within the family Birnaviridae

scientific article published in December 2008

Phylogenetic perspectives on the epidemiology and origins of SARS and SARS-like coronaviruses

scientific article published on 30 September 2009

Phylogeny-based evolutionary, demographical, and geographical dissection of North American type 2 porcine reproductive and respiratory syndrome viruses

scientific article published on 16 June 2010

Porcine reproductive and respiratory syndrome virus in Ontario, Canada 1999 to 2010: genetic diversity and restriction fragment length polymorphisms.

scientific article published on 23 February 2011

Recombination is associated with an outbreak of novel highly pathogenic porcine reproductive and respiratory syndrome viruses in China

scientific article published on 24 July 2013

Redefining the invertebrate RNA virosphere

scientific article published on 23 November 2016

Second-pandemic strain of Vibrio cholerae from the Philadelphia cholera outbreak of 1849.

scientific article published on 8 January 2014

Successful strategies implemented towards the elimination of canine rabies in the Western Hemisphere.

scientific article

Surveillance of Bat Coronaviruses in Kenya Identifies Relatives of Human Coronaviruses NL63 and 229E and Their Recombination History

scientific article published on 11 January 2017

Sustained RNA virome diversity in Antarctic penguins and their ticks

scientific article published on 14 April 2020

Sustained virome diversity in Antarctic penguins and their ticks: geographical connectedness and no evidence for low pathogen pressure

scientific article published on 12 December 2019

Systematic phylogenetic analysis of influenza A virus reveals many novel mosaic genome segments

scientific article published on 30 March 2013

Taxonomy of the order Mononegavirales: update 2016

scientific article published in August 2016

The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus

scientific article published on 01 January 2019

The diversity, evolution and origins of vertebrate RNA viruses

scientific article published on 13 August 2018

The evolutionary history of vertebrate RNA viruses

scientific article published on 4 April 2018

The history of rabies in the Western Hemisphere

scientific article

The spread of type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) in North America: a phylogeographic approach

scientific article published on 27 September 2013

Transcriptome Analysis and In Situ Hybridization for FcaGHV1 in Feline Lymphoma

scientific article published on 30 August 2018

Unmapped RNA Virus Diversity in Termites and their Symbionts

scientific article published on 09 October 2020

Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses

scientific article (publication date: 29 January 2015)

Use of partial N-gene sequences as a tool to monitor progress on rabies control and elimination efforts in Ethiopia

scientific article published on 20 June 2021

Using Metagenomics to Characterize an Expanding Virosphere

scientific article published in March 2018

Using artificial intelligence to document the hidden RNA virosphere

scientific article published in October 2024

Viral Discovery in the Invasive Australian Cane Toad (Rhinella marina) Using Metatranscriptomic and Genomic Approaches ⬇️

scientific article published in September 2018

Virome heterogeneity and connectivity in waterfowl and shorebird communities

scholarly article published 29 January 2019

Virome heterogeneity and connectivity in waterfowl and shorebird communities

scientific article published on 25 June 2019

Virus-virus interactions and host ecology are associated with RNA virome structure in wild birds

article by Michelle Wille et al published 29 October 2018 in Molecular Ecology

Zoonotic origin and transmission of Middle East respiratory syndrome coronavirus in the UAE.

scientific article published on 13 December 2017

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