List of works by Thomas Wicker

454 sequencing put to the test using the complex genome of barley

scientific article

A chromosome conformation capture ordered sequence of the barley genome

scientific article

A chromosome-scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew

scientific article published on 14 November 2018

A detailed look at 7 million years of genome evolution in a 439 kb contiguous sequence at the barley Hv-eIF4E locus: recombination, rearrangements and repeats

scientific article

A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block

scientific article

A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome

scientific article

A membrane-bound ankyrin repeat protein confers race-specific leaf rust disease resistance in wheat

scientific article published on 11 February 2021

A physical map of the short arm of wheat chromosome 1A.

scientific article

A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley

scientific article published on 12 May 2009

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

scientific article

Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid triticeae gene pools

scientific article published on 14 November 2008

Avirulence Genes in Cereal Powdery Mildews: The Gene-for-Gene Hypothesis 2.0.

scientific article published on March 2016

AvrPm2 encodes an RNase-like avirulence effector which is conserved in the two different specialized forms of wheat and rye powdery mildew fungus

scientific article published on 09 December 2016

Characterization of Lr75: a partial, broad-spectrum leaf rust resistance gene in wheat

scientific article published on 22 September 2016

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

scientific article published on 18 March 2021

Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity.

scientific article

Comparative sequence analysis of wheat and barley powdery mildew fungi reveals gene colinearity, dates divergence and indicates host-pathogen co-evolution

scientific article published on 16 October 2010

Comparative transcriptomics reveals how wheat responds to infection by Zymoseptoria tritici

scientific article published in November 2017

Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation

scientific article published on 18 January 2007

Computational analysis and characterization of UCE-like elements (ULEs) in plant genomes

scientific article (publication date: December 2012)

Contrasting rates of evolution in Pm3 loci from three wheat species and rice

scientific article

DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses

scientific article published on 07 September 2016

Differentiation Among Blumeria graminis f. sp. tritici Isolates Originating from Wild Versus Domesticated Triticum Species in Israel

scientific article published on 28 March 2016

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

scientific article published on 12 June 2013

Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon

scientific article published on 10 November 2015

Evolution of the Grain Dispersal System in Barley

scientific article published on July 2015

Evolutionary dynamics of retrotransposons assessed by high-throughput sequencing in wild relatives of wheat

scientific article

Fine mapping of powdery mildew resistance genes PmTb7A.1 and PmTb7A.2 in Triticum boeoticum (Boiss.) using the shotgun sequence assembly of chromosome 7AL.

scientific article published on 10 July 2015

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

scientific article published on 27 May 2011

Gene content and virtual gene order of barley chromosome 1H.

scientific article published on 19 August 2009

Genetic and molecular characterization of a locus involved in avirulence of Blumeria graminis f. sp. tritici on wheat Pm3 resistance alleles.

scientific article published on 9 July 2015

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

scientific article published in Science

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

scientific article

Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families

scientific article

Genome-wide comparison of Asian and African rice reveals high recent activity of DNA transposons

scientific article published on 28 April 2015

Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno

scientific article published on 10 October 2012

High-copy sequences reveal distinct evolution of the rye B chromosome

scientific article published on 24 April 2013

High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval

scientific article published on 4 December 2013

Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species

scientific article published on 11 January 2016

Illegitimate recombination is a major evolutionary mechanism for initiating size variation in plant resistance genes

scientific article published on 15 June 2007

Impact of transposable elements on genome structure and evolution in bread wheat

Inter-species sequence comparison of Brachypodium reveals how transposon activity corrodes genome colinearity

scientific article published on 18 June 2012

Leaf rust resistance gene Lr1, isolated from bread wheat (Triticum aestivum L.) is a member of the large psr567 gene family

scientific article

Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment

scientific article published on 6 June 2017

Long-read sequence assembly: a technical evaluation in barley

scientific article published on 01 July 2021

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

scientific article

Lr34 multi-pathogen resistance ABC transporter: molecular analysis of homoeologous and orthologous genes in hexaploid wheat and other grass species

scientific article published on 30 December 2010

Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat

scientific article published on 18 July 2015

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

scientific article published on 25 June 2010

Molecular mapping of an adult plant stem rust resistance gene Sr56 in winter wheat cultivar Arina

scientific article published on 4 May 2014

Multiple Avirulence Loci and Allele-Specific Effector Recognition Control the Pm3 Race-Specific Resistance of Wheat to Powdery Mildew.

scientific article published on 9 October 2015

Multiple wheat genomes reveal global variation in modern breeding

scientific article published on 25 November 2020

Patching gaps in plant genomes results in gene movement and erosion of colinearity

scientific article

Phytochelatin-metal(loid) transport into vacuoles shows different substrate preferences in barley and Arabidopsis

scientific article

Plant TOR signaling components

scientific article published in November 2011

Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

scholarly article published in Nature Genetics

Rapid Identification of Rust Resistance Genes Through Cultivar-Specific De Novo Chromosome Assemblies

scientific article published in January 2017

Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly

scientific article

Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat

scientific article published in May 2003

Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the Mediterranean grass Brachypodium distachyon

scientific article

Reconstructing the Evolutionary History of Powdery Mildew Lineages (Blumeria graminis) at Different Evolutionary Time Scales with NGS Data

scientific article

Recurrent sequence exchange between homeologous grass chromosomes

scientific article

RiTE database: a resource database for genus-wide rice genomics and evolutionary biology

scientific article published on 22 July 2015

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

scientific article

Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe

scientific article (publication date: 2014)

Shifting the limits in wheat research and breeding using a fully annotated reference genome

scientific article

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

scientific article published on 18 December 2019

The AvrPm3-Pm3 effector-NLR interactions control both race-specific resistance and host-specificity of cereal mildews on wheat

scientific article published on 23 May 2019

The Sorghum bicolor genome and the diversification of grasses

scientific article

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

scientific article

The evolution of functional complexity within the β-amylase gene family in land plants

scientific article published on 28 February 2019

The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants

scientific article published on 17 December 2015

The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution

scientific article

The repetitive landscape of the 5100 Mbp barley genome

scientific article published on 20 December 2017

The repetitive landscape of the chicken genome

scientific article

The wheat powdery mildew genome shows the unique evolution of an obligate biotroph

scientific article published on 14 July 2013

Two different CC-NBS-LRR genes are required for Lr10-mediated leaf rust resistance in tetraploid and hexaploid wheat

scientific article published in December 2009

Updated Genome Assembly and Annotation for Metrosideros polymorpha, an Emerging Model Tree Species of Ecological Divergence

scientific article published on 05 November 2019

Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations

scientific article published in September 2005

Wheat Pm4 resistance to powdery mildew is controlled by alternative splice variants encoding chimeric proteins

scientific article published on 11 March 2021

Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain

scientific article

Wheat gene bank accessions as a source of new alleles of the powdery mildew resistance gene Pm3: a large scale allele mining project

scientific article

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