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List of works by Oksana Lukjancenko

A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds

scientific article published on 8 November 2016

Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries

scientific article published on 23 July 2018

Author Correction: Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries

scientific article published on 01 October 2018

Benchmarking of methods for genomic taxonomy

scientific article published on 26 February 2014

Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera

scientific article

Comparison of 61 sequenced Escherichia coli genomes

scientific article

Correction: MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

scientific article published on 12 June 2017

Erratum to: Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.

scientific article

Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.

scientific article

Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing

scientific article

Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart

scientific article published on 22 February 2013

Genomic signature of multidrug-resistant Salmonella enterica serovar typhi isolates related to a massive outbreak in Zambia between 2010 and 2012

scientific article

Genomic variation in Salmonella enterica core genes for epidemiological typing

scientific article

Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing

scientific article published on 2 January 2018

Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition

scientific article

Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition

article

In silico assessment of virulence factors in strains of Streptococcus oralis and Streptococcus mitis isolated from patients with Infective Endocarditis

scientific article

Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?

scientific article published on May 2016

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

scientific article

Metagenomic analysis of viruses in toilet waste from long distance flights-A new procedure for global infectious disease surveillance

scientific article published in PLoS ONE

PanFunPro: PAN-genome analysis based on FUNctional PROfiles

article

Quality scores for 32,000 genomes

scientific article

Veillonella, Firmicutes: Microbes disguised as Gram negatives

scientific article

Vibrio chromosome-specific families

scientific article published on 18 March 2014

Whole genome sequencing as a tool for phylogenetic analysis of clinical strains of Mitis group streptococci.

scientific article published on 20 June 2016

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