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List of works by Jason H. Moore

A General Feature Engineering Wrapper for Machine Learning Using $$\epsilon $$ -Lexicase Survival

article

A High-Density Admixture Map for Disease Gene Discovery in African Americans

scientific article

A Locus at 5q33.3 Confers Resistance to Tuberculosis in Highly Susceptible Individuals.

scientific article

A Model Free Method to Generate Human Genetics Datasets with Complex Gene-Disease Relationships

article

A Multi-Core Parallelization Strategy for Statistical Significance Testing in Learning Classifier Systems

scientific article

A Novel Structure-Aware Sparse Learning Algorithm for Brain Imaging Genetics

article

A Pilot Characterization of the Human Chronobiome

scientific article published on 7 December 2017

A Simple and Computationally Efficient Approach to Multifactor Dimensionality Reduction Analysis of Gene-Gene Interactions for Quantitative Traits

scientific article

A Systems Genetics Approach to Dyslipidemia in Children and Adolescents

article

A balanced accuracy function for epistasis modeling in imbalanced datasets using multifactor dimensionality reduction.

scientific article

A call for biological data mining approaches in epidemiology

scientific article

A classification and characterization of two-locus, pure, strict, epistatic models for simulation and detection

scientific article published on 9 June 2014

A comparison of combinatorial partitioning and linear regression for the detection of epistatic effects of the ACE I/D and PAI-1 4G/5G polymorphisms on plasma PAI-1 levels

scientific article published on 01 July 2002

A comparison of two workflows for regulome and transcriptome-based prioritization of genetic variants associated with myocardial mass

scientific article published on 30 May 2019

A computationally efficient hypothesis testing method for epistasis analysis using multifactor dimensionality reduction

scientific article

A dietary-wide association study (DWAS) of environmental metal exposure in US children and adults

scientific article

A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility

scientific article

A gene expression fingerprint of C. elegans embryonic motor neurons

scientific article

A gene expression signature for recent onset rheumatoid arthritis in peripheral blood mononuclear cells

scientific article published on November 2004

A global test for gene-gene interactions based on random matrix theory

scientific article published on 07 July 2016

A global view of epistasis

A heuristic method for simulating open-data of arbitrary complexity that can be used to compare and evaluate machine learning methods.

scientific article published in January 2018

A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry

scientific article

A novel method to identify gene-gene effects in nuclear families: the MDR-PDT.

scientific article

A novel survival multifactor dimensionality reduction method for detecting gene-gene interactions with application to bladder cancer prognosis

scientific article

A robust multifactor dimensionality reduction method for detecting gene-gene interactions with application to the genetic analysis of bladder cancer susceptibility

scientific article

A role for CETP TaqIB polymorphism in determining susceptibility to atrial fibrillation: a nested case control study

scientific article published on 19 April 2006

A screening-testing approach for detecting gene-environment interactions using sequential penalized and unpenalized multiple logistic regression

scientific article

A simple and computationally efficient sampling approach to covariate adjustment for multifactor dimensionality reduction analysis of epistasis

scientific article

A simple multi-core parallelization strategy for learning classifier system evaluation

A system-level pathway-phenotype association analysis using synthetic feature random forest

scientific article

ABCB1 and GST polymorphisms associated with TP53 status in breast cancer

article published in 2007

Ability of epistatic interactions of cytokine single‐nucleotide polymorphisms to predict susceptibility to disease subsets in systemic sclerosis patients

scientific article published on 01 July 2008

Accelerating epistasis analysis in human genetics with consumer graphics hardware

scientific article

Acceleration of cardiovascular disease by a dysfunctional prostacyclin receptor mutation: potential implications for cyclooxygenase-2 inhibition

scientific article published on 06 March 2008

Activation of cryptic 3' splice sites within introns of cellular genes following gene entrapment

scientific article published on 20 May 2004

Adapting bioinformatics curricula for big data

scientific article

Additive functions in boolean models of gene regulatory network modules

scientific article

Addressing the Challenges of Detecting Epistasis in Genome-Wide Association Studies of Common Human Diseases Using Biological Expert Knowledge

Addressing the Challenges of Detecting Epistasis in Genome-Wide Association Studies of Common Human Diseases Using Biological Expert Knowledge

Admixture mapping in lupus identifies multiple functional variants within IFIH1 associated with apoptosis, inflammation, and autoantibody production

scientific article

Alzheimer's Disease Neuroimaging Initiative biomarkers as quantitative phenotypes: Genetics core aims, progress, and plans

scientific article

Amplification and over-expression of theEGFR anderbB-2 genes in human esophageal adenocarcinomas

article

An Analysis Pipeline with Statistical and Visualization-Guided Knowledge Discovery for Michigan-Style Learning Classifier Systems

scientific article

An Analysis of New Expert Knowledge Scaling Methods for Biologically Inspired Computing

An Independent Filter for Gene Set Testing Based on Spectral Enrichment

scientific article

An Open-Ended Computational Evolution Strategy for Evolving Parsimonious Solutions to Human Genetics Problems

article

An application of conditional logistic regression and multifactor dimensionality reduction for detecting gene-gene interactions on risk of myocardial infarction: the importance of model validation

scientific article

An augmented estimation procedure for EHR-based association studies accounting for differential misclassification

scientific article published on 01 February 2020

An information-gain approach to detecting three-way epistatic interactions in genetic association studies

scientific article published on 08 February 2013

Analysis of Complex Datasets

Analysis of Gene-Gene Interactions

scientific article published on 18 October 2017

Analysis of Gene-Gene Interactions

article

Analysis of gene-gene interactions

scientific article

Analysis validation has been neglected in the Age of Reproducibility

scientific article published on 10 December 2018

Ant Colony Optimization for Genome-Wide Genetic Analysis

article

Application of HapMap data to the evaluation of 8 candidate genes for pediatric slow transit constipation.

scientific article

Applications of bioinformatics to non-coding RNAs in the era of next-generation sequencing

scientific article published on January 2014

Artificial Immune Systems Perform Valuable Work When Detecting Epistasis in Human Genetic Datasets

Artificial intelligence programming with LabVIEW: genetic algorithms for instrumentation control and optimization

scientific article published in June 1995

Association of Cesarean Delivery and Formula Supplementation With the Intestinal Microbiome of 6-Week-Old Infants

scientific article published on 11 January 2016

Association of homozygous wild-type glutathione S-transferase M1 genotype with increased breast cancer risk

scientific article published in February 2004

Associations between Gut Microbial Colonization in Early Life and Respiratory Outcomes in Cystic Fibrosis

scientific article published on 26 March 2015

Automated discovery of test statistics using genetic programming

scientific article published on 10 October 2018

Automating Biomedical Data Science Through Tree-Based Pipeline Optimization

scholarly article by Randal S. Olson et al published 2016 in Lecture Notes in Computer Science

Bases, bits and disease: a mathematical theory of human genetics

scientific article published on 31 October 2007

Benchmarking relief-based feature selection methods for bioinformatics data mining

scientific article published on 17 July 2018

Bicliques in Graphs with Correlated Edges: From Artificial to Biological Networks

Big Data analysis on autopilot?

scientific article

Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm

scientific article

Big data bioinformatics.

scientific article

Bioinformatics

Bioinformatics

Bioinformatics

chapter of 'Molecular Epidemiology of Chronic Diseases' (2008)

Bioinformatics

scientific article (2007)

Bioinformatics challenges for genome-wide association studies

scientific article

Bioinformatics challenges in genome-wide association studies (GWAS).

scientific article published on January 2014

Bioinformatics: what the clinical laboratorian needs to know and prepare for.

scientific article published on 30 May 2013

Bipartite networks to study the genotype-to-phenotype relationship in cellular automata models

Bladder cancer SNP panel predicts susceptibility and survival

scientific article published on March 2009

Bootstrapping, permutation testing and the method of surrogate data

scientific article published on 01 June 1999

Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression

scientific article

Building the next generation of quantitative biologists

scientific article published on January 2014

CLCNKB-T481S and essential hypertension in a Ghanaian population

scientific article published on February 2009

COMT Val158Met Genotype and Individual Differences in Executive Function in Healthy Adults

scientific article

Cancer heterogeneity: origins and implications for genetic association studies

scientific article published on 31 July 2012

Cardiovascular disease risk factors in Ghana during the rural-to-urban transition: A cross-sectional study

scientific article

Cardiovascular risk associated with interactions among polymorphisms in genes from the renin-angiotensin, bradykinin, and fibrinolytic systems

scientific article

Cell-Based Metrics Improve the Detection of Gene-Gene Interactions Using Multifactor Dimensionality Reduction

article

Chapter 11: Genome-Wide Association Studies ⬇️

scientific article published on December 27, 2012

Characterization of microRNA expression levels and their biological correlates in human cancer cell lines

scientific article published on March 2007

Characterizing and Managing Missing Structured Data in Electronic Health Records: Data Analysis.

scientific article

Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity

scientific article

Characterizing genetic interactions in human disease association studies using statistical epistasis networks

scientific article

Co-localization of differentially expressed genes and shared susceptibility loci in human autoimmunity

article

Coevolution of rules and topology in cellular automata

Combinatorial pharmacogenetics

scientific article published in November 2005

Combining functional genomics strategies identifies modular heterogeneity of breast cancer intrinsic subtypes

scientific article

Common single nucleotide polymorphisms in the promoter region of the human factor XI gene

article

Comparing drug safety of hepatitis C therapies using post-market data

scientific article published on 08 August 2019

Complex and dynamic population structures: synthesis, open questions, and future directions

Complex systems analysis of bladder cancer susceptibility reveals a role for decarboxylase activity in two genome-wide association studies

scientific article

Computational analysis of gene-gene interactions using multifactor dimensionality reduction

scientific article

Computational genetics analysis of grey matter density in Alzheimer's disease

scientific article

Concordance of multiple analytical approaches demonstrates a complex relationship between DNA repair gene SNPs, smoking and bladder cancer susceptibility.

scientific article

Confronting complexity in late-onset Alzheimer disease: application of two-stage analysis approach addressing heterogeneity and epistasis

scientific article

Connecting the dots between genes, biochemistry, and disease susceptibility: systems biology modeling in human genetics

scientific article

Considerations for higher efficiency and productivity in research activities

scientific article published on 9 November 2016

Continuous Endpoint Data Mining with ExSTraCS

Continuous correction of differential path length factor in near-infrared spectroscopy

scientific article published on May 2013

Correlation between genetic variations in Hox clusters and Hirschsprung's disease.

scientific article published on 2 February 2007

Corrigendum to: Recommendations to enhance rigor and reproducibility in biomedical research

scientific article published on 01 September 2020

Critical properties of cellular automata with evolving network topologies

Cytokine expression patterns associated with systemic adverse events following smallpox immunization

scientific article

DATA SYNTHESIS AND METHOD EVALUATION FOR BRAIN IMAGING GENETICS.

scientific article

DNA repair polymorphisms modify bladder cancer risk: a multi-factor analytic strategy

scientific article

Data mining and the evolution of biological complexity

scientific article

Data-driven advice for applying machine learning to bioinformatics problems.

scientific article published in January 2018

Delay-tolerant networks and network coding: Comparative studies on simulated and real-device experiments

Delay-tolerant networks with network coding: How well can we simulate real devices?

Detecting gene-gene interactions using a permutation-based random forest method

scientific article published on 6 April 2016

Detecting pathway-based gene-gene and gene-environment interactions in pancreatic cancer

scientific article

Detecting, Characterizing, and Interpreting Nonlinear Gene–Gene Interactions Using Multifactor Dimensionality Reduction

scientific article published on January 1, 2010

Detection of linear and nonlinear dependencies in time series using the method of surrogate data in S-PLUS.

scientific article

Development and Evaluation of an Open-Ended Computational Evolution System for the Genetic Analysis of Susceptibility to Common Human Diseases

article

Development and evaluation of an open-ended computational evolution system for the creation of digital organisms with complex genetic architecture

article

Diabetic nephropathy is associated with gene expression levels of oxidative phosphorylation and related pathways

scientific article published in June 2006

Differential Gene Expression in Diabetic Nephropathy in Individuals With Type 1 Diabetes

scientific article

Differential Response to High Glucose in Skin Fibroblasts of Monozygotic Twins Discordant for Type 1 Diabetes

scientific article

Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals

scientific article published on 24 July 2017

Dissecting the obesity disease landscape: Identifying gene-gene interactions that are highly associated with body mass index

article

Dissecting trait heterogeneity: a comparison of three clustering methods applied to genotypic data

scientific article

Distinct patterns of DNA methylation in conventional adenomas involving the right and left colon

scientific article published on 19 July 2013

Diverse convergent evidence in the genetic analysis of complex disease: coordinating omic, informatic, and experimental evidence to better identify and validate risk factors

scientific article

Drinking-water arsenic exposure modulates gene expression in human lymphocytes from a U.S. population

scientific article published on April 2008

E-cadherin expression in primary and metastatic thoracic neoplasms and in Barrett's oesophagus

scientific article published on January 1995

EBIC

EVE: Cloud-Based Annotation of Human Genetic Variants

Ecogeographic genetic epidemiology

scientific article published on May 2009

Effect of Genetic Variants, Especially CYP2C9 and VKORC1, on the Pharmacology of Warfarin

scholarly article by Nikolaos A. Patsopoulos et al published 31 December 2012 in Seminars in Thrombosis and Hemostasis

Effect of cardiopulmonary bypass on urea cycle intermediates and nitric oxide levels after congenital heart surgery

scientific article

Effect of genetic variants, especially CYP2C9 and VKORC1, on the pharmacology of warfarin

scientific article

Effect of time of day on intraindividual variability in ambulatory blood pressure

scientific article published on 01 November 2000

Elevated male European and female African contributions to the genomes of African American individuals

scientific article published on 28 September 2006

Embedding covariate adjustments in tree-based automated machine learning for biomedical big data analyses

scientific article published on 01 October 2020

Embracing Complex Associations in Common Traits: Critical Considerations for Precision Medicine

scientific article

Embracing study heterogeneity for finding genetic interactions in large-scale research consortia

scientific article published on 04 October 2019

Embryonic-endometrial interactions at implantation in humans

scientific article

Employing Publically Available Biological Expert Knowledge from Protein-Protein Interaction Information

Enabling personal genomics with an explicit test of epistasis

scientific article published on January 2010

Entropy-based information gain approaches to detect and to characterize gene-gene and gene-environment interactions/correlations of complex diseases

scientific article

Environmental noise improves epistasis models of genetic data discovered using a computational evolution system

Epigenomic enhancer profiling defines a signature of colon cancer

scientific article

Epiregulin (EREG) and human V-ATPase (TCIRG1): genetic variation, ethnicity and pulmonary tuberculosis susceptibility in Guinea-Bissau and The Gambia.

scientific article published on 5 June 2014

Epistasis analysis using ReliefF.

scientific article

Epistasis analysis using artificial intelligence

scientific article published in January 2015

Epistasis analysis using information theory

scientific article

Epistasis analysis using multifactor dimensionality reduction

scientific article

Epistasis and its implications for personal genetics.

scientific article published on September 2009

Epistatic effects of polymorphisms in genes from the renin-angiotensin, bradykinin, and fibrinolytic systems on plasma t-PA and PAI-1 levels.

scientific article published on 5 January 2007

Epistatic interactions in genetic regulation of t-PA and PAI-1 levels in a Ghanaian population.

scientific article

Erratum to: Evolving hard problems: generating human genetics datasets with a complex etiology

scientific article published on 3 February 2016

Erratum to: The future of genomic medicine education in Africa

scientific article published on 3 August 2015

Erratum to: Why epistasis is important for tackling complex human disease genetics

scientific article published on 7 September 2015

Evaluating recommender systems for AI-driven biomedical informatics

scientific article published on 07 August 2020

Evaluation of a Tree-based Pipeline Optimization Tool for Automating Data Science

scholarly article published 2016

Evidence for epistasis between SLC6A4 and ITGB3 in autism etiology and in the determination of platelet serotonin levels.

scientific article published on 3 January 2007

Evidence for epistatic interactions in antiepileptic drug resistance

article

Evolution of Active Categorical Image Classification via Saccadic Eye Movement

Evolutionary computation: the next major transition of artificial intelligence?

scientific article published on 29 July 2017

Evolutionary dynamics on multiple scales: a quantitative analysis of the interplay between genotype, phenotype, and fitness in linear genetic programming

article

Evolutionary triangulation: informing genetic association studies with evolutionary evidence.

scientific article published on 2 April 2016

Evolving hard problems: Generating human genetics datasets with a complex etiology ⬇️

scientific article (publication date: 7 July 2011)

ExSTraCS 2.0: Description and Evaluation of a Scalable Learning Classifier System

scientific article

Examination of polymorphic glutathione S-transferase (GST) genes, tobacco smoking and prostate cancer risk among men of African descent: a case-control study

scientific article

Exploiting graphics processing units for computational biology and bioinformatics

scientific article

Exploiting the proteome to improve the genome-wide genetic analysis of epistasis in common human diseases

scientific article published on 13 June 2008

Exploration of a diversity of computational and statistical measures of association for genome-wide genetic studies

scientific article published on 09 July 2019

Expression of tumor suppressive microRNA-34a is associated with a reduced risk of bladder cancer recurrence

scientific article published on 29 December 2014

Extending Tree-Based Automated Machine Learning to Biomedical Image and Text Data Using Custom Feature Extractors

scientific article published on 24 July 2023

Failure to replicate a genetic association may provide important clues about genetic architecture

scientific article

Fast genome-wide epistasis analysis using ant colony optimization for multifactor dimensionality reduction analysis on graphics processing units

Feature Selection using a Random Forests Classifier for the Integrated Analysis of Multiple Data Types

Fetal exposures and perinatal influences on the stool microbiota of premature infants

scientific article

First complex, then simple

scientific article

From genotypes to genometypes: putting the genome back in genome-wide association studies

scientific article published on 11 March 2009

Functional dyadicity and heterophilicity of gene-gene interactions in statistical epistasis networks

scientific article

Functional genomics annotation of a statistical epistasis network associated with bladder cancer susceptibility

scientific article published on 11 April 2014

GAMETES: a fast, direct algorithm for generating pure, strict, epistatic models with random architectures

scientific article

GN-SCCA: GraphNet Based Sparse Canonical Correlation Analysis for Brain Imaging Genetics

article

GPU Accelerated Browser for Neuroimaging Genomics

scientific article published on 25 April 2018

Gender-specific correlations of plasminogen activator inhibitor-1 and tissue plasminogen activator levels with cardiovascular disease-related traits

scientific article published on 09 November 2006

Gene expression differences in skin fibroblasts in identical twins discordant for type 1 diabetes

scientific article

Gene expression profiles in human autoimmune disease

scientific article

Gene ontology analysis of pairwise genetic associations in two genome-wide studies of sporadic ALS

scientific article

Gene-gene interactions in folate and adenosine biosynthesis pathways affect methotrexate efficacy and tolerability in rheumatoid arthritis

scientific article published in December 2009

Generative and reproducible benchmarks for comprehensive evaluation of machine learning classifiers

scientific article published in 2022

Genes in the insulin and insulin-like growth factor pathway and odds of metachronous colorectal neoplasia

article

Genetic Effects on the Correlation Structure of CVD Risk Factors: Exome-Wide Data From a Ghanaian Population

scientific article

Genetic Programming Neural Networks: A Powerful Bioinformatics Tool for Human Genetics

scientific article

Genetic Programming Representations for Multi-dimensional Feature Learning in Biomedical Classification

article

Genetic analysis of quantitative phenotypes in AD and MCI: imaging, cognition and biomarkers

scientific article (publication date: June 2014)

Genetic architecture of tissue-type plasminogen activator and plasminogen activator inhibitor-1.

scientific article published on September 2008

Genetic basis for adverse events after smallpox vaccination

scientific article published on July 2008

Genetic interactions model among Eotaxin gene polymorphisms in asthma.

scientific article published on 20 August 2008

Genetic pathway-based hierarchical clustering analysis of older adults with cognitive complaints and amnestic mild cognitive impairment using clinical and neuroimaging phenotypes

scientific article

Genetic polymorphisms modify bladder cancer recurrence and survival in a USA population-based prognostic study.

scientific article

Genetic population structure analysis in New Hampshire reveals Eastern European ancestry

scientific article

Genetic simulation tools for post-genome wide association studies of complex diseases

scientific article

Genetic variation in complement component 2 of the classical complement pathway is associated with increased mortality and infection: a study of 627 patients with trauma

scientific article published on May 2009

Genetic variation in the autonomic nervous system affects mortality: a study of 1,095 trauma patients

scientific article published on 26 March 2009

Genetics of Plasminogen Activator Inhibitor-1 (PAI-1) in a Ghanaian Population

scientific article published on 31 August 2015

Genetics, statistics and human disease: analytical retooling for complexity

scientific article

Genome-Wide Analysis of Epistasis Using Multifactor Dimensionality Reduction

Genome-Wide Analysis of Epistasis Using Multifactor Dimensionality Reduction

article

Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations

scientific article

Genome-wide association studies for the identification of biomarkers in metabolic diseases

scientific article published on January 2010

Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation

scientific article

Genome-wide association study for circulating tissue plasminogen activator levels and functional follow-up implicates endothelial STXBP5 and STX2.

scientific article

Genome-wide epistasis and pleiotropy characterized by the bipartite human phenotype network

scientific article published in January 2015

Genomic mining for complex disease traits with “random chemistry”

article

Genomics and proteomics of lung disease: conference summary

scientific article

Global identifiability of latent class models with applications to diagnostic test accuracy studies: A Gröbner basis approach

scientific article published on 06 November 2019

Gut microbial colonisation in premature neonates predicts neonatal sepsis

scientific article published on 06 May 2012

HSD3B and gene-gene interactions in a pathway-based analysis of genetic susceptibility to bladder cancer

scientific article

Harnessing publicly available genetic data to prioritize lipid modifying therapeutic targets for prevention of coronary heart disease based on dysglycemic risk

scientific article

Heuristic identification of biological architectures for simulating complex hierarchical genetic interactions

scientific article published on 13 November 2014

Hippocampal transcriptome-guided genetic analysis of correlated episodic memory phenotypes in Alzheimer's disease

scientific article

How Computational Experiments Can Improve Our Understanding of the Genetic Architecture of Common Human Diseases

scientific article published on 06 February 2020

Hybrid grammar-based approach to nonlinear dynamical system identification from biological time series

scientific article

Ideas for how informaticians can get involved with COVID-19 research

scientific article published on 12 May 2020

Identification of SNPs associated with variola virus virulence

scientific article published on 14 February 2013

Identification of a two-loci epistatic interaction associated with susceptibility to rheumatoid arthritis through reverse engineering and multifactor dimensionality reduction

scientific article published on 4 May 2007

Identifying gene-gene interactions that are highly associated with Body Mass Index using Quantitative Multifactor Dimensionality Reduction (QMDR)

scientific article

Identifying gene-gene interactions that are highly associated with four quantitative lipid traits across multiple cohorts

scientific article

Identifying significant gene-environment interactions using a combination of screening testing and hierarchical false discovery rate control

scientific article published on 31 August 2016

Improved Power of Sib-Pair Linkage Analysis Using Measures of Complex Trait Dynamics

article

Improving the Reproducibility of Genetic Association Results Using Genotype Resampling Methods

Indoor and Outdoor Air Pollution and Lung Cancer in New Hampshire and Vermont

scientific article published on January 2012

Inferring Human Phenotype Networks from Genome-Wide Genetic Associations

Influence networks based on coexpression improve drug target discovery for the development of novel cancer therapeutics

scientific article published on 5 February 2014

Innovation is often unnerving: the door into summer

scientific article

Instance-linked attribute tracking and feedback for michigan-style supervised learning classifier systems

scholarly article published 2012

Integrated analysis of genetic and proteomic data identifies biomarkers associated with adverse events following smallpox vaccination

scientific article

Integrated analysis of genetic, genomic and proteomic data

scientific article

Integration of Molecular and Cellular Pathogenesis

Integration of Molecular and Cellular Pathogenesis: A Bioinformatics Approach

Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus

scientific article published on 4 June 2012

Interaction among apoptosis-associated sequence variants and joint effects on aggressive prostate cancer.

scientific article

Interaction among variant vascular endothelial growth factor (VEGF) and its receptor in relation to prostate cancer risk

scientific article published on March 2010

Interaction between allelic variations in vitamin D receptor and retinoid X receptor genes on metabolic traits

scientific article

Interleukin-1 gene complex single nucleotide polymorphisms in systemic sclerosis: a further step ahead

scientific article published on 4 March 2008

Interpretation of machine learning predictions for patient outcomes in electronic health records

scientific article published on 01 January 2019

Intestinal differentiation and p53 gene alterations in Barrett's esophagus and esophageal adenocarcinoma.

scientific article published in February 1994

Ion channels and schizophrenia: a gene set-based analytic approach to GWAS data for biological hypothesis testing

scientific article

JOINT IDENTIFICATION OF IMAGING AND PROTEOMICS BIOMARKERS OF ALZHEIMER'S DISEASE USING NETWORK-GUIDED SPARSE LEARNING.

scientific article published on May 2014

Key genes for modulating information flow play a temporal role as breast tumor coexpression networks are dynamically rewired by letrozole

scientific article

Layers of epistasis: genome-wide regulatory networks and network approaches to genome-wide association studies

scientific article published on 31 December 2010

Learning Classifier Systems: A Complete Introduction, Review, and Roadmap

scientific article

Learning Classifier Systems: The Rise of Genetics-Based Machine Learning in Biomedical Data Mining

article

Learning feature spaces for regression with genetic programming

scientific article published on 11 March 2020

Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm

scientific article published on 01 March 2020

Learning from local to global: An efficient distributed algorithm for modeling time-to-event data

scientific article published on 06 July 2020

Leveraging epigenomics and contactomics data to investigate SNP pairs in GWAS

scientific article published on 24 May 2018

Leveraging putative enhancer-promoter interactions to investigate two-way epistasis in Type 2 Diabetes GWAS.

scientific article published in January 2018

Linear dynamic features of ambulatory blood pressure in a population-based study.

scientific article

Longitudinal assessment of cognitive changes associated with adjuvant treatment for breast cancer: the impact of APOE and smoking

scientific article

Lumping versus splitting: the need for biological data mining in precision medicine

scientific article

Lévy-Flight Genetic Programming: Towards a New Mutation Paradigm

Machine learning for detecting gene-gene interactions: a review

scientific article

Male-female differences in the genetic regulation of t-PA and PAI-1 levels in a Ghanaian population

scientific article published on 25 October 2008

Mask Functions for the Symbolic Modeling of Epistasis Using Genetic Programming

scholarly article published 1 July 2008

Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life

scientific article

Message prioritization of epidemic forwarding in delay-tolerant networks

Meta-analysis of Complex Diseases at Gene Level with Generalized Functional Linear Models

scientific article published on 29 December 2015

Meta-analysis of Randomized Controlled Trials of Genotype-Guided vs Standard Dosing of Warfarin

scientific article

Meta-dimensional data integration identifies critical pathways for susceptibility, tumorigenesis and progression of endometrial cancer

scientific article

Microarray analysis of cytoplasmic versus whole cell RNA reveals a considerable number of missed and false positive mRNAs

scientific article published on 24 August 2009

Mining Regional Imaging Genetic Associations via Voxel-wise Enrichment Analysis

scientific article published on 01 May 2019

Mining beyond the exome

scientific article published on 13 June 2011

Mining the diseasome

scientific article published on 09 September 2011

Missing heritability and strategies for finding the underlying causes of complex disease

scientific article (publication date: June 2010)

MnSOD polymorphism and breast cancer in a population-based case-control study

scientific article published in September 2003

Models of Gene Regulation: Integrating Modern Knowledge into the Random Boolean Network Framework

article

Multi-class computational evolution: development, benchmark evaluation and application to RNA-Seq biomarker discovery

scientific article

Multifactor dimensionality reduction analysis identifies specific nucleotide patterns promoting genetic polymorphisms

scientific article published on 30 March 2009

Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS.

scientific article

Multifactor dimensionality reduction reveals a three-locus epistatic interaction associated with susceptibility to pulmonary tuberculosis

scientific article

Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions

scientific article published in February 2003

Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer

scientific article

Multifactor-dimensionality reduction shows a two-locus interaction associated with Type 2 diabetes mellitus.

scientific article

Multilocus analysis of hypertension: A hierarchical approach

scientific article published in January 2004

Multiple Threshold Spatially Uniform ReliefF for the Genetic Analysis of Complex Human Diseases

article

NETWORK-BASED GENOME WIDE STUDY OF HIPPOCAMPAL IMAGING PHENOTYPE IN ALZHEIMER'S DISEASE TO IDENTIFY FUNCTIONAL INTERACTION MODULES.

scientific article published on 19 June 2017

NO-BOUNDARY THINKING IN BIOINFORMATICS.

scientific article

Nature-inspired algorithms for the genetic analysis of epistasis in common human diseases: Theoretical assessment of wrapper vs. filter approaches

Network-Guided Sparse Learning for Predicting Cognitive Outcomes from MRI Measures

New strategies for identifying gene-gene interactions in hypertension

scientific article

Next generation analytic tools for large scale genetic epidemiology studies of complex diseases

scientific article

No association between variant DNA repair genes and prostate cancer risk among men of African descent

scientific article

No-boundary thinking in bioinformatics research

scientific article

O brave new world that has such machines in it

scientific article

ODAL: A one-shot distributed algorithm to perform logistic regressions on electronic health records data from multiple clinical sites

scientific article published on 01 January 2019

Obesity is mediated by differential aryl hydrocarbon receptor signaling in mice fed a Western diet

scientific article

On meta- and mega-analyses for gene-environment interactions.

scientific article published on 7 November 2017

Optimal Use of Biological Expert Knowledge from Literature Mining in Ant Colony Optimization for Analysis of Epistasis in Human Disease

Optimal Use of Expert Knowledge in Ant Colony Optimization for the Analysis of Epistasis in Human Disease

article

Optimization of gene set annotations via entropy minimization over variable clusters (EMVC).

scientific article

Optimization of neural network architecture using genetic programming improves detection and modeling of gene-gene interactions in studies of human diseases

scientific article

PMLB v1.0: an open-source dataset collection for benchmarking machine learning methods

scientific article published in 2021

Pareto Inspired Multi-objective Rule Fitness for Noise-Adaptive Rule-Based Machine Learning

scholarly article by Ryan J. Urbanowicz et al published 2016 in Lecture Notes in Computer Science

Pathway analysis of genomic data: concepts, methods, and prospects for future development

scientific article

Pathways-based analyses of whole-genome association study data in bipolar disorder reveal genes mediating ion channel activity and synaptic neurotransmission

scientific article

Personalized medicine: genetic variation and loss of physiologic complexity are associated with mortality in 644 trauma patients

scientific article published in October 2009

Petri net modeling of high-order genetic systems using grammatical evolution

scientific article published in November 2003

Phenotypic robustness and the assortativity signature of human transcription factor networks

scientific article

Plasminogen Activator Inhibitor-1 and Diagnosis of the Metabolic Syndrome in a West African Population.

scientific article published on 03 October 2016

Polymorphisms in the brain-derived neurotrophic factor gene influence memory and processing speed one month after brain injury

scientific article published on 2 March 2012

Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity

scientific article

Predicting targeted drug combinations based on Pareto optimal patterns of coexpression network connectivity

scientific article

Predicting the difficulty of pure, strict, epistatic models: metrics for simulated model selection

scientific article published on 26 September 2012

Prediction of relevant biomedical documents: a human microbiome case study

scientific article

Predictors of interindividual variation in ambulatory blood pressure and their time or activity dependence

scientific article published on 01 January 2000

Principal component gene set enrichment (PCGSE). ⬇️

scientific article

Proteomic patterns of tumour subsets in non-small-cell lung cancer

scientific article

Proteomic-based prognosis of brain tumor patients using direct-tissue matrix-assisted laser desorption ionization mass spectrometry

scientific article published in September 2005

Quantitative Trait Linkage Analysis

REGENS: an open source Python package for simulating realistic autosomal genotypes

scientific article published on 04 March 2021

Radio Frequency Pulse Designs for Magnetic Resonance at High Field ⬇️

doctoral dissertation

Random artificial incorporation of noise in a learning classifier system environment

Recommendations to enhance rigor and reproducibility in biomedical research

scientific article published on 01 June 2020

Recurrent tissue-specific mtDNA mutations are common in humans

scientific article

Regional imaging genetic enrichment analysis

scientific article published on 20 December 2019

Relief-based feature selection: Introduction and review

scientific article published on 18 July 2018

Renin-angiotensin system gene polymorphisms and atrial fibrillation

scientific article

Renin–angiotensin system gene polymorphisms and coronary artery disease in a large angiographic cohort: Detection of high order gene–gene interaction

article

Reporting of model validation procedures in human studies of genetic interactions

scientific article published on January 2004

Retooling Fitness for Noisy Problems in a Supervised Michigan-style Learning Classifier System

article published in 2015

Risk estimation using probability machines.

scientific article

Robust-ODAL: Learning from heterogeneous health systems without sharing patient-level data

scientific article published on 01 January 2020

Robustness and Evolvability of Recombination in Linear Genetic Programming

Robustness, Evolvability, and Accessibility in Linear Genetic Programming

article published in 2011

Robustness, evolvability, and the logic of genetic regulation

scientific article

Role for protein-protein interaction databases in human genetics

scientific article

Role of genetic heterogeneity and epistasis in bladder cancer susceptibility and outcome: a learning classifier system approach

scientific article published on 26 February 2013

Routine Discovery of Complex Genetic Models using Genetic Algorithms

scientific article

SLC39A2 and FSIP1 polymorphisms as potential modifiers of arsenic-related bladder cancer

scientific article published on 25 September 2011

SMAD4-dependent polysome RNA recruitment in human pancreatic cancer cells

scientific article published on 30 August 2011

SNCA and mTOR Pathway Single Nucleotide Polymorphisms Interact to Modulate the Age at Onset of Parkinson's Disease

scientific article published on 24 June 2019

SNP characteristics predict replication success in association studies

scientific article

SPARCoC: a new framework for molecular pattern discovery and cancer gene identification

scientific article

Selective repression of retinoic acid target genes by RIP140 during induced tumor cell differentiation of pluripotent human embryonal carcinoma cells

scientific article

Sensible Initialization Using Expert Knowledge for Genome-Wide Analysis of Epistasis Using Genetic Programming

article

Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: interaction between intestinal and respiratory tracts and impact of nutritional exposures

scientific article

Sex, Adiposity, and Hypertension Status Modify the Inverse Effect of Marine Food Intake on Blood Pressure in Alaska Native (Yup'ik) People

scientific article published on 18 March 2015

Shadows of complexity: what biological networks reveal about epistasis and pleiotropy

scientific article

Single nucleotide polymorphisms in ANKK1 and the dopamine D2 receptor gene affect cognitive outcome shortly after traumatic brain injury: a replication and extension study

scientific article

Single-nucleotide polymorphisms for diagnosis of salt-sensitive hypertension

scientific article

Solving Complex Problems in Human Genetics using Nature-Inspired Algorithms Requires Strategies which Exploit Domain-Specific Knowledge

article

Solving complex problems in human genetics using GP

article

Spatially uniform relieff (SURF) for computationally-efficient filtering of gene-gene interactions

scientific article published on 22 September 2009

Specific polymorphic variation in the mitochondrial genome and increased in-hospital mortality after severe trauma

scientific article published on September 2007

Spectral gene set enrichment (SGSE). ⬇️

scientific article

Statistical epistasis networks reduce the computational complexity of searching three-locus genetic models ⬇️

scientific article published on January 1, 2013

Structured sparse CCA for brain imaging genetics via graph OSCAR

scientific article

Structured sparse canonical correlation analysis for brain imaging genetics: an improved GraphNet method

scientific article published on 21 January 2016

Studying the Genetics of Complex Disease With Ancestry-Specific Human Phenotype Networks: The Case of Type 2 Diabetes in East Asian Populations

scientific article published on 07 April 2016

Supervising Random Forest Using Attribute Interaction Networks

Survival-LCS: A Rule-Based Machine Learning Approach to Survival Analysis

scientific article published on 08 July 2024

Symbolic discriminant analysis of microarray data in autoimmune disease

scientific article

Symbolic modeling of epistasis

scientific article published on 2 February 2007

Systems genetics for drug target discovery

scientific article

THE TRAINING OF NEXT GENERATION DATA SCIENTISTS IN BIOMEDICINE

scientific article

Ten simple rules for writing a paper about scientific software

scientific article published on 12 November 2020

Testing multiple hypotheses through IMP weighted FDR based on a genetic functional network with application to a new zebrafish transcriptome study

scientific article published on 17 June 2015

Testing multiple hypotheses through IMP weighted FDR based on a genetic functional network with application to a new zebrafish transcriptome study

Testing the assumptions of parametric linear models: the need for biological data mining in disciplines such as human genetics

article

The Application of Pittsburgh-Style Learning Classifier Systems to Address Genetic Heterogeneity and Epistasis in Association Studies

The Association of the Metabolic Syndrome with PAI-1 and t-PA Levels

scientific article

The Challenges of Whole-Genome Approaches to Common Diseases

scientific article published in The Journal of the American Medical Association

The ENCODE project and perspectives on pathways

scientific article published on 10 April 2014

The Informative Extremes: Using Both Nearest and Farthest Individuals Can Improve Relief Algorithms in the Domain of Human Genetics

article

The Role of Genetic Interactions in Neurodevelopmental Disorders

The Role of Mutations in Whole Genome Duplication

The Ubiquitous Nature of Epistasis in Determining Susceptibility to Common Human Diseases ⬇️

scientific article published on January 1, 2003

The application of michigan-style learning classifiersystems to address genetic heterogeneity and epistasisin association studies

The central role of biological data mining in connecting diverse disciplines

scientific article

The critical need for computational methods and software for simulating complex genetic and genomic data

scientific article

The disconnect between classical biostatistics and the biological data mining community

scientific article

The effects of polymorphisms in genes from the renin–angiotensin, bradykinin, and fibrinolytic systems on plasma t-PA and PAI-1 levels are dependent on environmental context

article

The effects of recombination on phenotypic exploration and robustness in evolution

scientific article published on 22 August 2014

The future of genomic medicine education in Africa

scientific article

The gender-specific role of polymorphisms from the fibrinolytic, renin-angiotensin, and bradykinin systems in determining plasma t-PA and PAI-1 levels

scientific article published on 01 October 2006

The genetic interacting landscape of 63 candidate genes in Major Depressive Disorder: an explorative study.

scientific article

The genetic structure and history of Africans and African Americans

scientific article

The golden era of biomedical informatics has begun

scientific article

The influence of assortativity on the robustness and evolvability of gene regulatory networks upon gene birth

scientific article published on 28 March 2013

The influence of assortativity on the robustness of signal-integration logic in gene regulatory networks

scientific article published on 8 December 2011

The interaction of four genes in the inflammation pathway significantly predicts prostate cancer risk

scientific article

The limits of p-values for biological data mining

scientific article

The multiscale backbone of the human phenotype network based on biological pathways

scientific article published on 25 January 2014

The promise of automated machine learning for the genetic analysis of complex traits

scientific article published in 2021

The relationship between plasma t-PA and PAI-1 levels is dependent on epistatic effects of the ACE I/D and PAI-1 4G/5G polymorphisms

scientific article

The role of visualization and 3-D printing in biological data mining

scientific article published on 5 August 2015

The spatial dimension in biological data mining

scientific article

The tip of the iceberg: challenges of accessing hospital electronic health record data for biological data mining

scientific article published on 22 September 2016

The use of animal models in the study of complex disease: all else is never equal or why do so many human studies fail to replicate animal findings?

scientific article published in February 2004

Tissue-specific network-based genome wide study of amygdala imaging phenotypes to identify functional interaction modules.

scientific article published on 29 May 2017

Towards human-human-computer interaction for biologically-inspired problem-solving in human genetics

article

Training the next generation of quantitative biologists in the era of big data

Transcriptional Profiling in Coronary Artery Disease

scholarly article by Thomas W. Chittenden et al published 24 October 2006 in Circulation

Transcriptome-guided amyloid imaging genetic analysis via a novel structured sparse learning algorithm

scientific article

Transfer learning with chest X-rays for ER patient classification

scientific article published on 01 December 2020

Translational Epidemiology, Biostatistics and Informatics

scholarly article published 14 March 2014

Traversing the conceptual divide between biological and statistical epistasis: systems biology and a more modern synthesis

scientific article

Two-dimensional Enrichment Analysis for Mining High-level Imaging Genetic Associations

Two-dimensional enrichment analysis for mining high-level imaging genetic associations

scientific article published on 13 May 2016

Using Expert Knowledge to Guide Covering and Mutation in a Michigan Style Learning Classifier System to Detect Epistasis and Heterogeneity

Using Machine Learning on Home Health Care Assessments to Predict Fall Risk

scientific article published on 01 August 2019

Validating a Threshold-Based Boolean Model of Regulatory Networks on a Biological Organism

Variant Set Enrichment: an R package to identify disease-associated functional genomic regions.

scientific article published on 22 February 2017

ViSEN: methodology and software for visualization of statistical epistasis networks

scientific article

WellExplorer: an integrative resource linking hydraulic fracturing chemicals with hormonal pathways and geographic location

scientific article published on 01 January 2020

Where are we now?

article

Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort

scientific article

Why epistasis is important for tackling complex human disease genetics

scientific article

gammaMAXT: a fast multiple-testing correction algorithm

scientific article

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